Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47135 * 2 1 4 4 C 1.46507 * 119.99752 * 274.84564 * 3 2 1 5 5 C 1.50701 * 109.46876 * 263.28415 * 4 3 2 6 6 H 1.07999 * 120.00556 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99575 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00378 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46955 * 60.00155 * 9 7 5 11 11 H 1.48500 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46986 * 300.00156 * 9 7 5 13 13 C 1.34775 * 120.00372 * 94.85035 * 3 2 1 14 14 O 1.21362 * 119.99356 * 354.70962 * 13 3 2 15 15 C 1.49346 * 120.00227 * 174.70836 * 13 3 2 16 16 O 1.21375 * 120.00299 * 0.55955 * 15 13 3 17 17 N 1.34777 * 120.00197 * 180.55463 * 15 13 3 18 18 C 1.39754 * 120.00390 * 185.72153 * 17 15 13 19 19 C 1.38950 * 120.49189 * 23.25184 * 18 17 15 20 20 N 1.31776 * 120.65059 * 180.26560 * 19 18 17 21 21 C 1.31898 * 121.80582 * 359.73503 * 20 19 18 22 22 C 1.38235 * 120.92936 * 0.02562 * 21 20 19 23 23 C 1.38535 * 119.24672 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.82436 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47766 * 300.00626 * 1 2 3 27 27 H 1.09008 * 109.47072 * 60.00458 * 1 2 3 28 28 H 1.09000 * 109.47133 * 239.99329 * 2 1 3 29 29 H 1.09000 * 109.46715 * 120.00094 * 2 1 3 30 30 H 1.08997 * 109.46893 * 23.28625 * 4 3 2 31 31 H 1.09001 * 109.46683 * 143.29098 * 4 3 2 32 32 H 0.97005 * 120.00609 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00135 * 5.72575 * 17 15 13 34 34 H 1.08000 * 119.67094 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.53544 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.37992 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46914 * 90.00127 * 24 23 22 38 38 H 1.08995 * 109.46796 * 330.00366 * 24 23 22 39 39 H 1.08992 * 109.47173 * 210.00052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1614 2.1074 -1.2643 5 6 3.5907 2.0211 -1.7341 6 1 4.3197 1.4798 -1.1494 7 6 3.9679 2.6341 -2.9101 8 7 3.0806 3.2946 -3.6215 9 14 5.7395 2.5265 -3.4930 10 1 6.1079 1.1024 -3.6965 11 1 5.8848 3.2639 -4.7738 12 1 6.6340 3.1282 -2.4717 13 6 2.3360 1.9836 1.1630 14 8 2.1276 1.4178 2.2162 15 6 2.9445 3.3475 1.1556 16 8 3.1436 3.9176 0.1027 17 7 3.2725 3.9454 2.3181 18 6 3.7299 5.2660 2.3200 19 6 3.4149 6.1228 1.2725 20 7 3.8488 7.3670 1.2686 21 6 4.5876 7.8487 2.2494 22 6 4.9384 7.0590 3.3284 23 6 4.5043 5.7442 3.3745 24 6 4.8663 4.8517 4.5335 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.5052 1.6650 -2.0137 31 1 1.8904 3.1527 -1.1154 32 1 3.3459 3.7256 -4.4491 33 1 3.1912 3.4591 3.1535 34 1 2.8123 5.7640 0.4511 35 1 4.9232 8.8744 2.2089 36 1 5.5434 7.4627 4.1269 37 1 4.1036 4.9345 5.3079 38 1 5.8308 5.1566 4.9394 39 1 4.9261 3.8185 4.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123904174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -16.973430 kcal Electronic energy + Delta-G solvation = -23628.301654 eV Core-core repulsion = 20150.869327 eV Total energy + Delta-G solvation = -3477.432327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93507 -39.64974 -37.94501 -35.92648 -34.86033 -33.17067 -32.67031 -30.56461 -29.98776 -27.82569 -27.10180 -25.13603 -23.38219 -23.06742 -22.08270 -21.22787 -19.39953 -17.61850 -17.05383 -16.68783 -16.21509 -15.91853 -15.84920 -15.24783 -14.70847 -14.33809 -14.22294 -14.00254 -13.61947 -13.38970 -13.07605 -12.95386 -12.83441 -12.69196 -12.36525 -12.02094 -11.89502 -11.70211 -11.49357 -10.98371 -10.87403 -10.69293 -10.65085 -10.47109 -10.00432 -9.72558 -9.38052 -9.27501 -8.76304 -8.32735 -8.05694 -7.89022 -6.03983 -4.06313 1.15942 1.32931 2.11369 2.75640 3.32251 3.37188 3.39799 3.71944 3.99338 4.05042 4.44740 4.67725 4.73950 4.79829 4.88589 5.07757 5.32970 5.34979 5.40954 5.43783 5.48481 5.64891 5.76107 5.80707 5.82169 6.10544 6.11613 6.24137 6.27993 6.35003 6.51928 6.63773 6.97434 7.25411 7.33367 7.45328 7.83487 8.01922 8.13700 8.17951 8.28484 8.58094 8.92597 9.56513 11.04882 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.006405 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.863788 B = 4370.530107 C = 5891.642444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.556 5.556 4 C 0.229 3.771 5 C -0.517 4.517 6 H 0.052 0.948 7 C 0.072 3.928 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.508 3.492 14 O -0.561 6.561 15 C 0.486 3.514 16 O -0.422 6.422 17 N -0.653 5.653 18 C 0.111 3.889 19 C 0.094 3.906 20 N -0.465 5.465 21 C 0.068 3.932 22 C -0.155 4.155 23 C -0.084 4.084 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.263 0.737 33 H 0.416 0.584 34 H 0.181 0.819 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 2.077 13.800 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.110 3.890 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.131 4.131 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.204 1.204 13 C 0.290 3.710 14 O -0.443 6.443 15 C 0.268 3.732 16 O -0.289 6.289 17 N -0.301 5.301 18 C 0.013 3.987 19 C -0.066 4.066 20 N -0.174 5.174 21 C -0.089 4.089 22 C -0.175 4.175 23 C -0.095 4.095 24 C -0.172 4.172 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.198 0.802 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.341 2.751 12.567 12.869 hybrid contribution 1.365 -0.757 0.638 1.686 sum 1.024 1.994 13.206 13.395 Atomic orbital electron populations 1.22104 0.96130 1.01646 1.02327 1.21452 0.94047 0.82664 1.03079 1.48320 1.58561 1.13493 1.08245 1.19951 0.97802 0.93293 0.77953 1.21124 0.94138 1.33665 1.06645 0.92932 1.24779 0.97192 0.94742 0.96411 1.69887 1.33759 1.33986 1.15063 0.86655 0.85328 0.77953 0.78027 1.20390 1.21145 1.20361 1.19632 0.80397 0.86289 0.84650 1.90653 1.56343 1.66299 1.30998 1.20534 0.80800 0.88219 0.83640 1.90960 1.45594 1.63570 1.28803 1.43232 1.64713 1.11287 1.10877 1.18791 0.97401 0.85164 0.97349 1.23457 0.97670 0.87629 0.97852 1.67784 1.09739 1.14048 1.25793 1.22694 0.96149 1.00124 0.89924 1.21792 1.01985 0.93447 1.00290 1.20033 0.96870 0.95785 0.96774 1.20741 1.02315 0.98788 0.95378 0.91995 0.92686 0.92152 0.89840 0.90535 0.94730 0.91811 0.92694 0.74589 0.80196 0.83022 0.84837 0.90558 0.90681 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.11 1.90 6.11 -4.05 -0.02 1.87 16 3 N -0.56 -11.51 2.48 -175.61 -0.43 -11.95 16 4 C 0.23 5.55 4.79 -5.19 -0.02 5.53 16 5 C -0.52 -13.91 7.76 -34.44 -0.27 -14.18 16 6 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 8 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.29 7.67 -11.64 -0.09 10.20 16 14 O -0.56 -11.20 16.04 5.49 0.09 -11.11 16 15 C 0.49 9.67 7.54 -11.63 -0.09 9.58 16 16 O -0.42 -9.80 9.22 5.47 0.05 -9.75 16 17 N -0.65 -10.60 5.04 -10.20 -0.05 -10.65 16 18 C 0.11 1.79 6.46 -83.59 -0.54 1.25 16 19 C 0.09 1.72 9.92 -17.31 -0.17 1.54 16 20 N -0.46 -8.05 10.35 -13.07 -0.14 -8.19 16 21 C 0.07 0.92 11.18 -17.52 -0.20 0.73 16 22 C -0.15 -1.82 9.81 -39.47 -0.39 -2.20 16 23 C -0.08 -1.09 5.93 -104.12 -0.62 -1.70 16 24 C -0.12 -1.10 9.54 36.01 0.34 -0.76 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 28 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 29 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 30 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 31 H 0.06 1.68 5.86 -51.93 -0.30 1.37 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 33 H 0.42 5.78 6.93 -40.82 -0.28 5.50 16 34 H 0.18 3.68 5.69 -52.49 -0.30 3.38 16 35 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.07 0.70 7.06 -51.93 -0.37 0.33 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -31.47 331.61 -6.52 -37.99 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.97 Total: 5.01 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -1.78 Total: 11.73 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.11 Total: -55.67 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.14 Total: -20.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.47 -6.52 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123904174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.016 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds