Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47135 * 2 1 4 4 C 1.46507 * 119.99752 * 274.84564 * 3 2 1 5 5 C 1.50701 * 109.46876 * 263.28415 * 4 3 2 6 6 H 1.07999 * 120.00556 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99575 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00378 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46955 * 60.00155 * 9 7 5 11 11 H 1.48500 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46986 * 300.00156 * 9 7 5 13 13 C 1.34775 * 120.00372 * 94.85035 * 3 2 1 14 14 O 1.21362 * 119.99356 * 354.70962 * 13 3 2 15 15 C 1.49346 * 120.00227 * 174.70836 * 13 3 2 16 16 O 1.21375 * 120.00299 * 0.55955 * 15 13 3 17 17 N 1.34777 * 120.00197 * 180.55463 * 15 13 3 18 18 C 1.39754 * 120.00390 * 185.72153 * 17 15 13 19 19 C 1.38950 * 120.49189 * 23.25184 * 18 17 15 20 20 N 1.31776 * 120.65059 * 180.26560 * 19 18 17 21 21 C 1.31898 * 121.80582 * 359.73503 * 20 19 18 22 22 C 1.38235 * 120.92936 * 0.02562 * 21 20 19 23 23 C 1.38535 * 119.24672 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.82436 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47766 * 300.00626 * 1 2 3 27 27 H 1.09008 * 109.47072 * 60.00458 * 1 2 3 28 28 H 1.09000 * 109.47133 * 239.99329 * 2 1 3 29 29 H 1.09000 * 109.46715 * 120.00094 * 2 1 3 30 30 H 1.08997 * 109.46893 * 23.28625 * 4 3 2 31 31 H 1.09001 * 109.46683 * 143.29098 * 4 3 2 32 32 H 0.97005 * 120.00609 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00135 * 5.72575 * 17 15 13 34 34 H 1.08000 * 119.67094 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.53544 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.37992 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46914 * 90.00127 * 24 23 22 38 38 H 1.08995 * 109.46796 * 330.00366 * 24 23 22 39 39 H 1.08992 * 109.47173 * 210.00052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1614 2.1074 -1.2643 5 6 3.5907 2.0211 -1.7341 6 1 4.3197 1.4798 -1.1494 7 6 3.9679 2.6341 -2.9101 8 7 3.0806 3.2946 -3.6215 9 14 5.7395 2.5265 -3.4930 10 1 6.1079 1.1024 -3.6965 11 1 5.8848 3.2639 -4.7738 12 1 6.6340 3.1282 -2.4717 13 6 2.3360 1.9836 1.1630 14 8 2.1276 1.4178 2.2162 15 6 2.9445 3.3475 1.1556 16 8 3.1436 3.9176 0.1027 17 7 3.2725 3.9454 2.3181 18 6 3.7299 5.2660 2.3200 19 6 3.4149 6.1228 1.2725 20 7 3.8488 7.3670 1.2686 21 6 4.5876 7.8487 2.2494 22 6 4.9384 7.0590 3.3284 23 6 4.5043 5.7442 3.3745 24 6 4.8663 4.8517 4.5335 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.5052 1.6650 -2.0137 31 1 1.8904 3.1527 -1.1154 32 1 3.3459 3.7256 -4.4491 33 1 3.1912 3.4591 3.1535 34 1 2.8123 5.7640 0.4511 35 1 4.9232 8.8744 2.2089 36 1 5.5434 7.4627 4.1269 37 1 4.1036 4.9345 5.3079 38 1 5.8308 5.1566 4.9394 39 1 4.9261 3.8185 4.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123904174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = -38.095496 kcal Electronic energy + Delta-G solvation = -23629.217576 eV Core-core repulsion = 20150.869327 eV Total energy + Delta-G solvation = -3478.348249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.32684 -41.03304 -39.45631 -37.51413 -36.25168 -34.69231 -34.28914 -32.07267 -31.19316 -29.08332 -28.74896 -26.57628 -25.02942 -24.63606 -23.24294 -22.55592 -20.87321 -19.13720 -18.61676 -18.48532 -17.57688 -17.33152 -17.17022 -16.84166 -16.47898 -15.90281 -15.58139 -15.28934 -14.93839 -14.71087 -14.50333 -14.29290 -14.04722 -13.75571 -13.63315 -13.59716 -13.39168 -13.17837 -12.78684 -12.72121 -12.61695 -12.34512 -12.08161 -12.06009 -11.81436 -11.70094 -10.66114 -10.50783 -10.34378 -10.17320 -9.67435 -9.27566 -8.15775 -6.23589 -0.10099 0.22908 0.63868 1.31500 1.35750 1.38947 1.44763 2.17191 2.37352 2.56354 2.84682 3.18624 3.32449 3.65927 3.71002 3.79312 4.02586 4.14594 4.30333 4.34302 4.51083 4.60376 4.70015 4.74861 4.76936 4.90704 4.94046 5.01014 5.11887 5.19362 5.21299 5.26370 5.37356 5.52757 5.73820 5.80120 6.02474 6.09929 6.27499 6.69749 6.79525 6.99326 7.08554 7.42095 8.92298 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.006405 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.863788 B = 4370.530107 C = 5891.642444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.563 5.563 4 C 0.248 3.752 5 C -0.517 4.517 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.507 3.493 14 O -0.556 6.556 15 C 0.484 3.516 16 O -0.465 6.465 17 N -0.634 5.634 18 C 0.087 3.913 19 C 0.063 3.937 20 N -0.501 5.501 21 C 0.066 3.934 22 C -0.140 4.140 23 C -0.074 4.074 24 C -0.115 4.115 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.024 0.976 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.428 0.572 34 H 0.144 0.856 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 1.993 16.482 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.293 5.293 4 C 0.128 3.872 5 C -0.556 4.556 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.289 3.711 14 O -0.438 6.438 15 C 0.266 3.734 16 O -0.335 6.335 17 N -0.283 5.283 18 C -0.011 4.011 19 C -0.095 4.095 20 N -0.211 5.211 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.084 4.084 24 C -0.172 4.172 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.161 0.839 35 H 0.203 0.797 36 H 0.200 0.800 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.216 2.631 15.302 15.574 hybrid contribution 0.905 -0.633 -0.023 1.104 sum 2.121 1.999 15.279 15.554 Atomic orbital electron populations 1.22033 0.94077 1.03598 1.01530 1.21715 0.95760 0.80748 1.03589 1.48287 1.59112 1.14720 1.07171 1.19441 0.96273 0.92409 0.79108 1.21315 0.95074 1.32853 1.06324 0.93716 1.25496 1.00665 0.94687 0.96833 1.69994 1.35407 1.35096 1.15484 0.85781 0.80951 0.78578 0.77322 1.18813 1.20667 1.21126 1.19733 0.80266 0.86488 0.84583 1.90637 1.56262 1.66338 1.30541 1.20591 0.80589 0.88046 0.84163 1.90967 1.47713 1.64397 1.30421 1.42993 1.63657 1.11480 1.10160 1.18883 0.99261 0.84557 0.98380 1.22986 0.99232 0.88985 0.98304 1.67701 1.11480 1.13815 1.28088 1.23388 0.94556 1.01816 0.89353 1.22310 1.00783 0.92414 1.00476 1.20533 0.94742 0.96852 0.96272 1.20879 1.04410 0.97539 0.94329 0.88631 0.93212 0.93151 0.89701 0.89576 0.95760 0.94150 0.92807 0.73184 0.83911 0.79677 0.79994 0.88295 0.87999 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.24 71.98 0.74 -3.65 16 2 C 0.10 3.50 6.11 86.38 0.53 4.03 16 3 N -0.56 -23.79 2.48 -827.87 -2.05 -25.84 16 4 C 0.25 12.57 4.79 85.63 0.41 12.98 16 5 C -0.52 -28.63 7.76 25.60 0.20 -28.43 16 6 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 7 C 0.02 1.29 5.46 84.65 0.46 1.76 16 8 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 9 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 C 0.51 20.85 7.67 87.24 0.67 21.52 16 14 O -0.56 -21.84 16.04 -3.28 -0.05 -21.90 16 15 C 0.48 20.05 7.54 87.24 0.66 20.70 16 16 O -0.46 -23.02 9.22 -3.33 -0.03 -23.05 16 17 N -0.63 -20.81 5.04 -304.53 -1.53 -22.34 16 18 C 0.09 2.80 6.46 38.30 0.25 3.05 16 19 C 0.06 2.44 9.92 84.87 0.84 3.29 16 20 N -0.50 -17.71 10.35 -195.27 -2.02 -19.73 16 21 C 0.07 1.65 11.18 84.68 0.95 2.60 16 22 C -0.14 -2.74 9.81 22.34 0.22 -2.53 16 23 C -0.07 -1.71 5.93 -19.54 -0.12 -1.82 16 24 C -0.12 -1.73 9.54 71.24 0.68 -1.05 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 29 H 0.09 2.75 7.36 -2.39 -0.02 2.73 16 30 H 0.02 1.27 8.02 -2.39 -0.02 1.25 16 31 H 0.04 2.27 5.86 -2.39 -0.01 2.26 16 32 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 33 H 0.43 11.55 6.93 -92.71 -0.64 10.91 16 34 H 0.14 6.50 5.69 -2.91 -0.02 6.49 16 35 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.06 1.07 7.06 -2.39 -0.02 1.06 16 Total: -1.00 -71.63 331.61 3.54 -68.09 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.44 Total: 19.37 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 6.48 Total: 32.44 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.32 Total: -122.46 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.08 Total: -44.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.63 3.54 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123904174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.996 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds