Wall clock time and date at job start Tue Mar 31 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99464 * 2 1 4 4 C 1.53002 * 109.47137 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47450 * 68.31439 * 4 3 2 6 6 C 1.46899 * 110.99902 * 293.74280 * 5 4 3 7 7 C 1.47200 * 109.47200 * 302.07641 * 6 5 4 8 8 C 3.78268 * 142.70589 * 166.31206 * 2 1 3 9 9 C 4.90498 * 135.56217 * 151.78735 * 2 1 3 10 10 C 1.39552 * 120.11771 * 45.97751 * 9 8 7 11 11 C 1.37930 * 119.87953 * 179.76417 * 10 9 8 12 12 C 1.38578 * 120.11715 * 0.50857 * 11 10 9 13 13 F 1.35096 * 119.88573 * 179.72255 * 12 11 10 14 14 C 1.38579 * 120.23353 * 359.73969 * 12 11 10 15 15 C 1.37929 * 120.11738 * 0.02562 * 14 12 11 16 16 C 1.46904 * 110.99474 * 57.69367 * 5 4 3 17 17 C 1.50691 * 109.47433 * 66.04706 * 16 5 4 18 18 H 1.08010 * 119.99784 * 359.97438 * 17 16 5 19 19 C 1.37879 * 120.00310 * 179.97438 * 17 16 5 20 20 N 1.31511 * 119.99877 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47341 * 60.00061 * 21 19 17 23 23 H 1.48501 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47126 * 299.99903 * 21 19 17 25 25 H 1.09004 * 109.47506 * 60.00693 * 1 2 3 26 26 H 1.09001 * 109.46547 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47543 * 300.00063 * 1 2 3 28 28 H 1.09000 * 109.47242 * 59.99719 * 3 2 1 29 29 H 1.09000 * 109.47336 * 299.99980 * 3 2 1 30 30 H 1.09004 * 109.46891 * 308.31560 * 4 3 2 31 31 H 1.08995 * 109.47145 * 188.32354 * 4 3 2 32 32 H 1.09004 * 109.46866 * 182.07632 * 6 5 4 33 33 H 1.08994 * 109.47626 * 62.08270 * 6 5 4 34 34 H 1.07997 * 120.06000 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.94097 * 180.24980 * 11 10 9 36 36 H 1.08000 * 119.94299 * 179.97438 * 14 12 11 37 37 H 1.07993 * 120.05989 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46717 * 186.05117 * 16 5 4 39 39 H 1.08997 * 109.47135 * 306.04441 * 16 5 4 40 40 H 0.96993 * 120.00036 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9827 0.6363 -1.2879 6 6 3.5268 -0.7499 -1.4563 7 6 4.0340 -1.5717 -0.3453 8 6 4.4382 -2.2269 0.5424 9 6 4.9312 -3.0262 1.6235 10 6 4.8022 -4.4151 1.5829 11 6 5.2831 -5.1806 2.6247 12 6 5.8840 -4.5720 3.7151 13 9 6.3484 -5.3259 4.7354 14 6 6.0100 -3.1928 3.7627 15 6 5.5368 -2.4183 2.7241 16 6 3.5316 1.4782 -2.4040 17 6 4.2142 2.8196 -2.3293 18 1 4.9129 3.0263 -1.5321 19 6 3.9467 3.7831 -3.2787 20 7 3.0956 3.5316 -4.2491 21 14 4.7934 5.4456 -3.1864 22 1 6.2641 5.2576 -3.2706 23 1 4.3374 6.2967 -4.3147 24 1 4.4515 6.1046 -1.9003 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6884 1.8465 0.8899 29 1 1.6884 1.8465 -0.8900 30 1 3.8476 0.5209 0.8055 31 1 3.9778 2.1698 0.1481 32 1 3.9027 -1.1438 -2.4006 33 1 2.4372 -0.7762 -1.4598 34 1 4.3297 -4.8900 0.7358 35 1 5.1874 -6.2558 2.5924 36 1 6.4788 -2.7234 4.6150 37 1 5.6351 -1.3436 2.7623 38 1 3.7826 0.9948 -3.3482 39 1 2.4521 1.6159 -2.3421 40 1 2.9077 4.2092 -4.9172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154258872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:31 Heat of formation + Delta-G solvation = -7.398283 kcal Electronic energy + Delta-G solvation = -22068.139514 eV Core-core repulsion = 18571.202435 eV Total energy + Delta-G solvation = -3496.937079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.04251 -39.08843 -38.42661 -36.12172 -33.58351 -32.50125 -31.33150 -30.40028 -29.03714 -27.40783 -26.17612 -24.46421 -23.14225 -23.07871 -22.68007 -19.89145 -18.17015 -17.50093 -16.41437 -16.38917 -16.20898 -16.09255 -15.73647 -15.13815 -14.66065 -14.53497 -14.19906 -14.05120 -13.74164 -13.57561 -13.43025 -13.03644 -12.60767 -12.38576 -12.13933 -11.70928 -11.56711 -11.37766 -11.28949 -11.12418 -10.85042 -10.72625 -10.45262 -10.35112 -10.01066 -9.75741 -9.36719 -9.30681 -9.08325 -8.49329 -8.22082 -7.23799 -6.08740 -4.10429 0.74736 1.07943 2.91935 2.96478 3.29642 3.34379 3.37402 3.96373 4.09027 4.15426 4.30982 4.40303 4.62480 4.68922 5.07975 5.10001 5.26719 5.28632 5.46248 5.49446 5.54214 5.73713 5.75311 5.80801 5.83025 5.89656 5.93721 5.96897 6.11595 6.25208 6.29362 6.36783 6.40806 6.64632 6.72915 7.18632 7.27900 7.49937 7.72463 7.91536 8.00005 8.12229 8.45707 8.96772 9.54105 11.01806 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003124 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.920031 B = 8961.482321 C = 9597.362363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.385 6.385 3 C 0.017 3.983 4 C 0.068 3.932 5 N -0.528 5.528 6 C 0.144 3.856 7 C -0.070 4.070 8 C -0.205 4.205 9 C 0.040 3.960 10 C -0.079 4.079 11 C -0.151 4.151 12 C 0.089 3.911 13 F -0.143 7.143 14 C -0.149 4.149 15 C -0.075 4.075 16 C 0.188 3.812 17 C -0.509 4.509 18 H 0.063 0.937 19 C 0.057 3.943 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.032 0.968 39 H 0.002 0.998 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -12.960 12.586 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.304 6.304 3 C -0.060 4.060 4 C -0.060 4.060 5 N -0.251 5.251 6 C 0.018 3.982 7 C -0.071 4.071 8 C -0.206 4.206 9 C 0.040 3.960 10 C -0.097 4.097 11 C -0.169 4.169 12 C 0.070 3.930 13 F -0.121 7.121 14 C -0.168 4.168 15 C -0.093 4.093 16 C 0.063 3.937 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.144 4.144 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.110 -13.057 12.430 18.028 hybrid contribution -0.648 1.093 0.144 1.279 sum -0.758 -11.964 12.574 17.373 Atomic orbital electron populations 1.22673 0.82516 1.01857 0.99724 1.87965 1.18701 1.28760 1.95007 1.23522 0.97031 0.84419 1.01055 1.22174 0.89730 1.01431 0.92709 1.62406 1.59114 0.99889 1.03731 1.19485 0.99130 0.88122 0.91498 1.22542 0.94638 0.95189 0.94713 1.18763 1.04521 1.00592 0.96759 1.15885 0.97782 0.91230 0.91074 1.21101 0.98211 0.92296 0.98129 1.21023 1.01327 1.00957 0.93642 1.17787 0.99741 0.89156 0.86303 1.91486 1.86671 1.76179 1.57799 1.21055 1.03233 0.91784 1.00739 1.21148 0.95922 1.00580 0.91668 1.19838 0.94434 0.91659 0.87728 1.21098 1.25116 0.97100 1.11477 0.91876 1.24966 0.95324 0.98865 0.95287 1.69937 1.34646 1.34761 1.14373 0.86571 0.80035 0.83426 0.77453 1.20103 1.21378 1.20290 0.94169 0.90382 0.94722 0.94143 0.90974 0.91884 0.88622 0.89337 0.89757 0.84691 0.84561 0.84474 0.84466 0.94982 0.98011 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -6.49 7.32 -35.23 -0.26 -6.75 16 3 C 0.02 0.31 5.75 37.16 0.21 0.52 16 4 C 0.07 1.30 5.44 -3.82 -0.02 1.27 16 5 N -0.53 -11.09 4.75 -239.59 -1.14 -12.22 16 6 C 0.14 2.65 4.93 -6.61 -0.03 2.62 16 7 C -0.07 -1.22 11.64 -37.11 -0.43 -1.66 16 8 C -0.20 -3.31 13.24 -38.82 -0.51 -3.82 16 9 C 0.04 0.55 5.73 -106.99 -0.61 -0.07 16 10 C -0.08 -0.90 9.75 -39.20 -0.38 -1.28 16 11 C -0.15 -1.53 10.01 -39.57 -0.40 -1.93 16 12 C 0.09 0.98 7.30 -39.33 -0.29 0.69 16 13 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 14 C -0.15 -1.58 10.01 -39.57 -0.40 -1.98 16 15 C -0.08 -0.90 9.75 -39.20 -0.38 -1.28 16 16 C 0.19 4.61 4.45 -4.98 -0.02 4.59 16 17 C -0.51 -13.60 8.55 -34.44 -0.29 -13.90 16 18 H 0.06 1.67 7.10 -52.48 -0.37 1.30 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.46 5.81 -51.93 -0.30 1.16 16 30 H 0.06 1.14 6.82 -51.93 -0.35 0.78 16 31 H 0.10 1.88 6.92 -51.93 -0.36 1.52 16 32 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 33 H 0.09 1.56 5.45 -51.93 -0.28 1.28 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.03 0.85 8.04 -51.93 -0.42 0.43 16 39 H 0.00 0.06 5.77 -51.93 -0.30 -0.24 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -29.11 343.61 -8.33 -37.44 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.33 Total: 0.13 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.54 Total: -13.25 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.40 Total: -37.12 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.26 Total: -6.75 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.11 -8.33 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154258872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.047 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds