Wall clock time and date at job start Tue Mar 31 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99464 * 2 1 4 4 C 1.53002 * 109.47137 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47450 * 68.31439 * 4 3 2 6 6 C 1.46899 * 110.99902 * 293.74280 * 5 4 3 7 7 C 1.47200 * 109.47200 * 302.07641 * 6 5 4 8 8 C 3.78268 * 142.70589 * 166.31206 * 2 1 3 9 9 C 4.90498 * 135.56217 * 151.78735 * 2 1 3 10 10 C 1.39552 * 120.11771 * 45.97751 * 9 8 7 11 11 C 1.37930 * 119.87953 * 179.76417 * 10 9 8 12 12 C 1.38578 * 120.11715 * 0.50857 * 11 10 9 13 13 F 1.35096 * 119.88573 * 179.72255 * 12 11 10 14 14 C 1.38579 * 120.23353 * 359.73969 * 12 11 10 15 15 C 1.37929 * 120.11738 * 0.02562 * 14 12 11 16 16 C 1.46904 * 110.99474 * 57.69367 * 5 4 3 17 17 C 1.50691 * 109.47433 * 66.04706 * 16 5 4 18 18 H 1.08010 * 119.99784 * 359.97438 * 17 16 5 19 19 C 1.37879 * 120.00310 * 179.97438 * 17 16 5 20 20 N 1.31511 * 119.99877 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47341 * 60.00061 * 21 19 17 23 23 H 1.48501 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47126 * 299.99903 * 21 19 17 25 25 H 1.09004 * 109.47506 * 60.00693 * 1 2 3 26 26 H 1.09001 * 109.46547 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47543 * 300.00063 * 1 2 3 28 28 H 1.09000 * 109.47242 * 59.99719 * 3 2 1 29 29 H 1.09000 * 109.47336 * 299.99980 * 3 2 1 30 30 H 1.09004 * 109.46891 * 308.31560 * 4 3 2 31 31 H 1.08995 * 109.47145 * 188.32354 * 4 3 2 32 32 H 1.09004 * 109.46866 * 182.07632 * 6 5 4 33 33 H 1.08994 * 109.47626 * 62.08270 * 6 5 4 34 34 H 1.07997 * 120.06000 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.94097 * 180.24980 * 11 10 9 36 36 H 1.08000 * 119.94299 * 179.97438 * 14 12 11 37 37 H 1.07993 * 120.05989 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46717 * 186.05117 * 16 5 4 39 39 H 1.08997 * 109.47135 * 306.04441 * 16 5 4 40 40 H 0.96993 * 120.00036 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9827 0.6363 -1.2879 6 6 3.5268 -0.7499 -1.4563 7 6 4.0340 -1.5717 -0.3453 8 6 4.4382 -2.2269 0.5424 9 6 4.9312 -3.0262 1.6235 10 6 4.8022 -4.4151 1.5829 11 6 5.2831 -5.1806 2.6247 12 6 5.8840 -4.5720 3.7151 13 9 6.3484 -5.3259 4.7354 14 6 6.0100 -3.1928 3.7627 15 6 5.5368 -2.4183 2.7241 16 6 3.5316 1.4782 -2.4040 17 6 4.2142 2.8196 -2.3293 18 1 4.9129 3.0263 -1.5321 19 6 3.9467 3.7831 -3.2787 20 7 3.0956 3.5316 -4.2491 21 14 4.7934 5.4456 -3.1864 22 1 6.2641 5.2576 -3.2706 23 1 4.3374 6.2967 -4.3147 24 1 4.4515 6.1046 -1.9003 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6884 1.8465 0.8899 29 1 1.6884 1.8465 -0.8900 30 1 3.8476 0.5209 0.8055 31 1 3.9778 2.1698 0.1481 32 1 3.9027 -1.1438 -2.4006 33 1 2.4372 -0.7762 -1.4598 34 1 4.3297 -4.8900 0.7358 35 1 5.1874 -6.2558 2.5924 36 1 6.4788 -2.7234 4.6150 37 1 5.6351 -1.3436 2.7623 38 1 3.7826 0.9948 -3.3482 39 1 2.4521 1.6159 -2.3421 40 1 2.9077 4.2092 -4.9172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154258872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:31 Heat of formation + Delta-G solvation = -23.264492 kcal Electronic energy + Delta-G solvation = -22068.827525 eV Core-core repulsion = 18571.202435 eV Total energy + Delta-G solvation = -3497.625090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91052 -40.04207 -39.84963 -37.57653 -35.08742 -34.26593 -32.18126 -31.59383 -30.54883 -29.08495 -27.41757 -26.02349 -24.80309 -23.95884 -23.76951 -21.53577 -19.17517 -18.54088 -18.28006 -17.64649 -17.55445 -17.25132 -16.76940 -16.59732 -16.16947 -15.77414 -15.72626 -15.29393 -14.87142 -14.54151 -14.34510 -14.30041 -14.22048 -13.58467 -13.43325 -13.17629 -13.07022 -12.98430 -12.80248 -12.55521 -12.47594 -12.14305 -11.98847 -11.88017 -11.49558 -11.36631 -11.03709 -10.62419 -10.42970 -10.14239 -9.30080 -8.89385 -8.17245 -6.26376 -0.21518 0.24175 1.43798 1.46244 1.53401 1.61904 1.89257 2.43225 2.85025 2.90553 3.10994 3.15966 3.24223 3.53779 3.81075 3.91269 4.17401 4.25331 4.27517 4.38314 4.41778 4.44688 4.52267 4.53582 4.66826 4.71477 4.78720 4.92247 4.94262 5.03562 5.08236 5.09896 5.21227 5.29285 5.34803 5.45185 5.68047 5.84797 6.06054 6.19316 6.33727 6.55256 6.66781 6.88628 7.42828 8.93152 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003124 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.920031 B = 8961.482321 C = 9597.362363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.029 3.971 4 C 0.071 3.929 5 N -0.538 5.538 6 C 0.153 3.847 7 C -0.114 4.114 8 C -0.177 4.177 9 C 0.006 3.994 10 C -0.075 4.075 11 C -0.145 4.145 12 C 0.088 3.912 13 F -0.143 7.143 14 C -0.147 4.147 15 C -0.077 4.077 16 C 0.205 3.795 17 C -0.521 4.521 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.033 0.967 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.004 0.996 39 H -0.013 1.013 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -13.757 14.671 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.049 4.049 4 C -0.057 4.057 5 N -0.261 5.261 6 C 0.027 3.973 7 C -0.114 4.114 8 C -0.179 4.179 9 C 0.006 3.994 10 C -0.093 4.093 11 C -0.164 4.164 12 C 0.069 3.931 13 F -0.121 7.121 14 C -0.165 4.165 15 C -0.095 4.095 16 C 0.079 3.921 17 C -0.560 4.560 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.022 0.978 39 H 0.004 0.996 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.407 -13.869 14.538 20.097 hybrid contribution -0.801 1.172 -0.379 1.469 sum -0.394 -12.698 14.159 19.023 Atomic orbital electron populations 1.22877 0.80617 1.03491 1.00239 1.87934 1.20728 1.27958 1.95063 1.23249 0.96179 0.84919 1.00543 1.22121 0.90753 1.00963 0.91863 1.62274 1.59589 1.00798 1.03450 1.19284 0.99034 0.86787 0.92195 1.22256 0.97019 0.96479 0.95666 1.19301 1.02802 0.99496 0.96267 1.16099 1.00021 0.92113 0.91191 1.21249 0.97748 0.91438 0.98858 1.21272 1.00159 1.02242 0.92705 1.17988 0.99342 0.89401 0.86386 1.91493 1.86628 1.76181 1.57843 1.21247 1.02655 0.91734 1.00896 1.21218 0.95742 1.00999 0.91572 1.19467 0.93269 0.91435 0.87920 1.21399 1.25033 0.98117 1.11415 0.91917 1.25804 0.95903 1.02594 0.94863 1.70061 1.36033 1.36005 1.15145 0.85523 0.78905 0.78913 0.77807 1.19650 1.21111 1.19120 0.94807 0.88246 0.92999 0.91944 0.94004 0.90727 0.89631 0.89644 0.90049 0.83388 0.81955 0.82304 0.84160 0.97784 0.99586 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -13.29 7.32 -148.98 -1.09 -14.38 16 3 C 0.03 1.04 5.75 71.98 0.41 1.45 16 4 C 0.07 2.74 5.44 86.30 0.47 3.21 16 5 N -0.54 -23.29 4.75 -911.93 -4.33 -27.62 16 6 C 0.15 5.82 4.93 84.50 0.42 6.24 16 7 C -0.11 -3.99 11.64 31.11 0.36 -3.62 16 8 C -0.18 -5.61 13.24 30.01 0.40 -5.21 16 9 C 0.01 0.15 5.73 -21.40 -0.12 0.03 16 10 C -0.08 -1.53 9.75 22.51 0.22 -1.31 16 11 C -0.15 -2.52 10.01 22.28 0.22 -2.30 16 12 C 0.09 1.67 7.30 22.43 0.16 1.84 16 13 F -0.14 -2.79 17.26 44.97 0.78 -2.02 16 14 C -0.15 -2.73 10.01 22.28 0.22 -2.50 16 15 C -0.08 -1.71 9.75 22.51 0.22 -1.49 16 16 C 0.20 10.49 4.45 85.55 0.38 10.87 16 17 C -0.52 -28.47 8.55 25.60 0.22 -28.26 16 18 H 0.06 3.36 7.10 -2.91 -0.02 3.34 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 21 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.76 5.81 -2.39 -0.01 1.74 16 30 H 0.07 2.68 6.82 -2.38 -0.02 2.66 16 31 H 0.09 3.41 6.92 -2.39 -0.02 3.39 16 32 H 0.09 3.19 8.09 -2.39 -0.02 3.17 16 33 H 0.08 3.12 5.45 -2.39 -0.01 3.11 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.00 0.23 8.04 -2.39 -0.02 0.21 16 39 H -0.01 -0.72 5.77 -2.39 -0.01 -0.73 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -62.80 343.61 4.01 -58.79 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.05 Total: 12.56 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 5.30 Total: -18.36 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -4.04 Total: -81.76 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.09 Total: -14.38 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -62.80 4.01 -58.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154258872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.528 kcal (2) G-P(sol) polarization free energy of solvation -62.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds