Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47062 * 240.00174 * 3 2 1 5 5 H 1.48500 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47333 * 119.99545 * 3 2 1 7 7 C 1.37879 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.48064 * 111.16437 * 52.60365 * 11 10 9 13 13 C 1.53988 * 107.14543 * 145.63064 * 12 11 10 14 14 C 1.54593 * 105.13853 * 358.91767 * 13 12 11 15 15 H 1.09001 * 110.73014 * 96.40304 * 14 13 12 16 16 C 1.53004 * 110.87647 * 219.61371 * 14 13 12 17 17 S 1.81403 * 109.47126 * 288.58798 * 16 14 13 18 18 C 1.76204 * 103.00073 * 180.02562 * 17 16 14 19 19 C 1.38970 * 120.07706 * 359.72835 * 18 17 16 20 20 C 1.38085 * 119.91690 * 179.76258 * 19 18 17 21 21 C 1.38308 * 120.07757 * 0.48896 * 20 19 18 22 22 C 1.38298 * 120.16224 * 359.76251 * 21 20 19 23 23 C 1.38080 * 120.07831 * 0.02562 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 11 10 9 25 25 H 0.97006 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47722 * 59.99706 * 9 7 2 27 27 H 1.09003 * 109.46787 * 299.99740 * 9 7 2 28 28 H 1.08995 * 109.47330 * 59.99911 * 10 9 7 29 29 H 1.08994 * 109.46826 * 299.99285 * 10 9 7 30 30 H 1.09006 * 109.75798 * 26.31855 * 12 11 10 31 31 H 1.08998 * 110.16226 * 265.17346 * 12 11 10 32 32 H 1.09005 * 110.31083 * 240.00088 * 13 12 11 33 33 H 1.08999 * 110.39531 * 117.87480 * 13 12 11 34 34 H 1.08992 * 109.47234 * 48.59022 * 16 14 13 35 35 H 1.09001 * 109.47228 * 168.59184 * 16 14 13 36 36 H 1.08003 * 120.04495 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.96082 * 180.22747 * 20 19 18 38 38 H 1.08002 * 119.91619 * 179.74225 * 21 20 19 39 39 H 1.07997 * 119.96083 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.04037 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 81.84409 * 24 11 10 42 42 H 1.09001 * 110.66368 * 318.88248 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0024 12 6 0.5175 -4.9787 -1.0949 13 6 0.4489 -6.4364 -1.5863 14 6 1.4780 -7.2022 -0.7235 15 1 0.9887 -7.6864 0.1217 16 6 2.2399 -8.2277 -1.5655 17 16 1.1342 -9.6010 -1.9922 18 6 2.1697 -10.6624 -2.9441 19 6 3.4928 -10.3121 -3.1848 20 6 4.3026 -11.1487 -3.9271 21 6 3.7956 -12.3291 -4.4393 22 6 2.4779 -12.6785 -4.2062 23 6 1.6635 -11.8489 -3.4611 24 6 2.4271 -6.0783 -0.2372 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8877 30 1 0.8377 -4.3274 -1.9082 31 1 -0.4600 -4.6634 -0.7300 32 1 0.7215 -6.4937 -2.6402 33 1 -0.5508 -6.8426 -1.4322 34 1 2.5991 -7.7532 -2.4786 35 1 3.0879 -8.6076 -0.9957 36 1 3.8881 -9.3883 -2.7889 37 1 5.3320 -10.8788 -4.1115 38 1 4.4302 -12.9795 -5.0230 39 1 2.0853 -13.6008 -4.6080 40 1 0.6344 -12.1221 -3.2798 41 1 2.9277 -6.3701 0.6861 42 1 3.1574 -5.8312 -1.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174142335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = 14.706722 kcal Electronic energy + Delta-G solvation = -19754.069158 eV Core-core repulsion = 16824.303799 eV Total energy + Delta-G solvation = -2929.765358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19408 -38.84391 -34.29699 -32.57584 -31.44459 -31.24146 -29.81688 -28.88468 -26.05013 -24.06259 -23.01929 -22.73767 -21.80718 -20.48491 -19.28056 -17.97819 -16.63680 -16.41233 -16.11849 -15.32383 -14.98860 -14.90230 -14.50019 -14.16207 -13.97955 -13.78579 -13.55347 -13.36031 -13.00414 -12.65307 -12.32594 -11.94424 -11.87799 -11.54324 -11.31247 -11.02844 -10.93681 -10.87932 -10.84056 -10.56005 -10.50453 -10.24109 -10.02998 -9.92891 -9.34646 -9.31575 -9.15280 -8.36169 -7.82941 -7.61509 -6.00608 -4.03325 0.90157 1.04023 1.27549 2.21240 3.32638 3.37093 3.39306 3.39558 4.28959 4.46124 4.52234 4.55576 4.60644 4.76726 4.80705 4.90573 5.06218 5.16505 5.20632 5.31771 5.35154 5.40176 5.41537 5.56435 5.64950 5.76702 5.94733 5.95653 5.98654 6.05041 6.11204 6.17126 6.25206 6.34045 6.42644 6.54567 6.57246 6.90692 7.44236 7.45650 7.71895 7.85478 8.04996 8.41544 9.03333 9.60296 11.10706 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002399 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.778733 B =11670.024868 C =12029.246730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.054 3.946 11 N -0.517 5.517 12 C 0.041 3.959 13 C -0.126 4.126 14 C -0.077 4.077 15 H 0.092 0.908 16 C -0.096 4.096 17 S -0.110 6.110 18 C -0.082 4.082 19 C -0.135 4.135 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.104 4.104 24 C 0.045 3.955 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 -25.030 -7.641 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.073 4.073 11 N -0.241 5.241 12 C -0.087 4.087 13 C -0.164 4.164 14 C -0.097 4.097 15 H 0.110 0.890 16 C -0.244 4.244 17 S 0.136 5.864 18 C -0.195 4.195 19 C -0.159 4.159 20 C -0.120 4.120 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.085 4.085 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.830 -24.951 -6.749 26.129 hybrid contribution 2.278 1.208 -1.206 2.846 sum 6.107 -23.743 -7.955 25.774 Atomic orbital electron populations 1.69960 1.06022 1.26722 1.50492 1.24999 0.94853 0.99203 0.95277 0.86644 0.79571 0.83109 0.78590 1.20315 1.21254 1.20197 1.21142 0.92931 0.91040 1.51088 0.92838 1.19157 0.93997 0.90325 0.97861 1.22499 0.97074 0.88639 0.99091 1.64875 1.13183 1.03357 1.42729 1.22815 0.98032 0.94641 0.93248 1.22548 0.99321 0.95602 0.98906 1.21858 0.96278 0.93805 0.97752 0.88996 1.23787 1.00480 0.96648 1.03504 1.85642 1.18951 1.19216 1.62629 1.21899 0.96989 0.98737 1.01837 1.21236 0.92897 1.00663 1.01137 1.21087 0.99605 0.94340 0.96970 1.21180 0.95813 0.97266 1.00846 1.21095 0.93919 0.99267 0.97937 1.20786 1.00117 0.93231 0.98616 1.23221 0.94537 0.90998 0.99773 0.92913 0.96342 0.95736 0.91831 0.96061 0.93289 0.90185 0.91545 0.90916 0.89344 0.89248 0.85785 0.85756 0.85900 0.85600 0.85518 0.90303 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.72 -27.88 -0.13 0.49 16 10 C 0.05 1.15 4.94 -3.82 -0.02 1.13 16 11 N -0.52 -9.43 5.40 -230.31 -1.24 -10.68 16 12 C 0.04 0.70 5.35 -2.67 -0.01 0.68 16 13 C -0.13 -1.67 6.21 -25.38 -0.16 -1.83 16 14 C -0.08 -0.93 3.03 -88.76 -0.27 -1.20 16 15 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 16 C -0.10 -0.97 3.73 37.16 0.14 -0.83 16 17 S -0.11 -1.19 21.64 -107.50 -2.33 -3.51 16 18 C -0.08 -0.85 6.11 -39.04 -0.24 -1.09 16 19 C -0.14 -1.30 9.36 -39.37 -0.37 -1.67 16 20 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 21 C -0.13 -0.99 10.04 -39.53 -0.40 -1.39 16 22 C -0.10 -0.80 10.04 -39.62 -0.40 -1.20 16 23 C -0.10 -0.97 9.79 -39.37 -0.39 -1.35 16 24 C 0.04 0.64 5.99 -1.90 -0.01 0.62 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.50 6.64 -51.93 -0.34 0.16 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.45 7.89 -51.93 -0.41 0.04 16 30 H 0.05 0.91 7.14 -51.93 -0.37 0.53 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.88 7.55 -51.93 -0.39 0.49 16 35 H 0.09 0.81 7.76 -51.92 -0.40 0.41 16 36 H 0.12 1.08 5.88 -52.48 -0.31 0.77 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.58 7.76 -51.93 -0.40 0.17 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -30.68 350.59 -12.43 -43.11 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.80 Total: -2.21 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.06 Total: -22.48 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.51 Total: -36.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.33 Total: -3.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.68 -12.43 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174142335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds