Wall clock time and date at job start Tue Mar 31 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47062 * 240.00174 * 3 2 1 5 5 H 1.48500 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47333 * 119.99545 * 3 2 1 7 7 C 1.37879 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.48064 * 111.16437 * 52.60365 * 11 10 9 13 13 C 1.53988 * 107.14543 * 145.63064 * 12 11 10 14 14 C 1.54593 * 105.13853 * 358.91767 * 13 12 11 15 15 H 1.09001 * 110.73014 * 96.40304 * 14 13 12 16 16 C 1.53004 * 110.87647 * 219.61371 * 14 13 12 17 17 S 1.81403 * 109.47126 * 288.58798 * 16 14 13 18 18 C 1.76204 * 103.00073 * 180.02562 * 17 16 14 19 19 C 1.38970 * 120.07706 * 359.72835 * 18 17 16 20 20 C 1.38085 * 119.91690 * 179.76258 * 19 18 17 21 21 C 1.38308 * 120.07757 * 0.48896 * 20 19 18 22 22 C 1.38298 * 120.16224 * 359.76251 * 21 20 19 23 23 C 1.38080 * 120.07831 * 0.02562 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 11 10 9 25 25 H 0.97006 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47722 * 59.99706 * 9 7 2 27 27 H 1.09003 * 109.46787 * 299.99740 * 9 7 2 28 28 H 1.08995 * 109.47330 * 59.99911 * 10 9 7 29 29 H 1.08994 * 109.46826 * 299.99285 * 10 9 7 30 30 H 1.09006 * 109.75798 * 26.31855 * 12 11 10 31 31 H 1.08998 * 110.16226 * 265.17346 * 12 11 10 32 32 H 1.09005 * 110.31083 * 240.00088 * 13 12 11 33 33 H 1.08999 * 110.39531 * 117.87480 * 13 12 11 34 34 H 1.08992 * 109.47234 * 48.59022 * 16 14 13 35 35 H 1.09001 * 109.47228 * 168.59184 * 16 14 13 36 36 H 1.08003 * 120.04495 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.96082 * 180.22747 * 20 19 18 38 38 H 1.08002 * 119.91619 * 179.74225 * 21 20 19 39 39 H 1.07997 * 119.96083 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.04037 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 81.84409 * 24 11 10 42 42 H 1.09001 * 110.66368 * 318.88248 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0024 12 6 0.5175 -4.9787 -1.0949 13 6 0.4489 -6.4364 -1.5863 14 6 1.4780 -7.2022 -0.7235 15 1 0.9887 -7.6864 0.1217 16 6 2.2399 -8.2277 -1.5655 17 16 1.1342 -9.6010 -1.9922 18 6 2.1697 -10.6624 -2.9441 19 6 3.4928 -10.3121 -3.1848 20 6 4.3026 -11.1487 -3.9271 21 6 3.7956 -12.3291 -4.4393 22 6 2.4779 -12.6785 -4.2062 23 6 1.6635 -11.8489 -3.4611 24 6 2.4271 -6.0783 -0.2372 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8877 30 1 0.8377 -4.3274 -1.9082 31 1 -0.4600 -4.6634 -0.7300 32 1 0.7215 -6.4937 -2.6402 33 1 -0.5508 -6.8426 -1.4322 34 1 2.5991 -7.7532 -2.4786 35 1 3.0879 -8.6076 -0.9957 36 1 3.8881 -9.3883 -2.7889 37 1 5.3320 -10.8788 -4.1115 38 1 4.4302 -12.9795 -5.0230 39 1 2.0853 -13.6008 -4.6080 40 1 0.6344 -12.1221 -3.2798 41 1 2.9277 -6.3701 0.6861 42 1 3.1574 -5.8312 -1.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174142335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:38 Heat of formation + Delta-G solvation = -1.594395 kcal Electronic energy + Delta-G solvation = -19754.776027 eV Core-core repulsion = 16824.303799 eV Total energy + Delta-G solvation = -2930.472228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15438 -39.80357 -35.98347 -34.37997 -32.18708 -31.86520 -31.26078 -30.38158 -27.45847 -25.71112 -23.67510 -23.49993 -23.41082 -21.68951 -20.73530 -18.69379 -18.54824 -17.48700 -17.08048 -16.54607 -16.37377 -16.03075 -15.71377 -15.30563 -15.01345 -14.80972 -14.48251 -14.32489 -14.23705 -14.00951 -13.84587 -13.23925 -13.18177 -12.88958 -12.68787 -12.46133 -12.39259 -12.12630 -12.09699 -11.86929 -11.79192 -11.62746 -11.33964 -11.24887 -11.04976 -10.69235 -10.57006 -9.94043 -9.31483 -8.38380 -8.21602 -6.33501 0.26030 0.41575 0.49785 1.39124 1.42583 1.44567 1.50523 2.39176 2.77421 3.07840 3.11587 3.55776 3.67103 3.76478 3.92711 4.01861 4.19833 4.22434 4.24901 4.34840 4.45878 4.50494 4.54000 4.56479 4.59267 4.65501 4.75510 4.80489 4.89174 5.00687 5.04922 5.06700 5.12288 5.25778 5.31976 5.42759 5.45834 5.56986 5.61696 5.76451 5.98768 5.99026 6.13179 6.29257 6.83144 7.35650 8.90288 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002399 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.778733 B =11670.024868 C =12029.246730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.071 3.929 11 N -0.532 5.532 12 C 0.040 3.960 13 C -0.115 4.115 14 C -0.064 4.064 15 H 0.092 0.908 16 C -0.084 4.084 17 S -0.133 6.133 18 C -0.099 4.099 19 C -0.149 4.149 20 C -0.108 4.108 21 C -0.131 4.131 22 C -0.105 4.105 23 C -0.119 4.119 24 C 0.045 3.955 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -26.360 -8.454 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.057 4.057 11 N -0.257 5.257 12 C -0.088 4.088 13 C -0.153 4.153 14 C -0.084 4.084 15 H 0.111 0.889 16 C -0.233 4.233 17 S 0.112 5.888 18 C -0.212 4.212 19 C -0.173 4.173 20 C -0.128 4.128 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.084 4.084 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.148 0.852 41 H 0.111 0.889 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.894 -26.309 -7.566 28.002 hybrid contribution 1.618 1.529 -0.986 2.435 sum 7.512 -24.779 -8.552 27.269 Atomic orbital electron populations 1.70106 1.07861 1.27886 1.51285 1.25998 0.95789 1.03444 0.94585 0.85460 0.78234 0.77867 0.79239 1.19102 1.20823 1.19055 1.21592 0.93549 0.92227 1.51110 0.92068 1.18982 0.94252 0.92237 0.95055 1.22137 0.95714 0.88550 0.99274 1.64779 1.14140 1.03214 1.43536 1.22759 0.96679 0.97034 0.92309 1.22466 1.00407 0.92876 0.99585 1.21717 0.95456 0.93511 0.97763 0.88927 1.23648 1.00332 0.95847 1.03443 1.85651 1.19842 1.19923 1.63396 1.21972 0.97353 0.99171 1.02704 1.21420 0.92843 1.01308 1.01711 1.21410 1.00491 0.94380 0.96476 1.21561 0.96030 0.97260 1.00297 1.21429 0.94012 0.99817 0.97233 1.21005 1.00740 0.93368 0.99106 1.23312 0.94387 0.89804 1.00930 0.92728 0.98587 0.99159 0.91594 0.95738 0.95198 0.92377 0.90486 0.90179 0.88931 0.87775 0.85301 0.83814 0.83375 0.83245 0.85163 0.88890 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.75 4.72 29.85 0.14 1.89 16 10 C 0.07 3.06 4.94 86.30 0.43 3.49 16 11 N -0.53 -19.58 5.40 -882.57 -4.77 -24.35 16 12 C 0.04 1.43 5.35 86.41 0.46 1.89 16 13 C -0.12 -3.01 6.21 31.47 0.20 -2.81 16 14 C -0.06 -1.47 3.03 -9.59 -0.03 -1.50 16 15 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.08 -1.56 3.73 71.98 0.27 -1.29 16 17 S -0.13 -2.73 21.64 -56.49 -1.22 -3.95 16 18 C -0.10 -1.95 6.11 22.62 0.14 -1.81 16 19 C -0.15 -2.61 9.36 22.41 0.21 -2.40 16 20 C -0.11 -1.54 10.04 22.25 0.22 -1.32 16 21 C -0.13 -1.64 10.04 22.30 0.22 -1.42 16 22 C -0.11 -1.42 10.04 22.25 0.22 -1.20 16 23 C -0.12 -2.06 9.79 22.41 0.22 -1.84 16 24 C 0.05 1.21 5.99 86.65 0.52 1.73 16 25 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 26 H 0.00 -0.24 6.64 -2.39 -0.02 -0.26 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 29 H 0.02 1.03 7.89 -2.39 -0.02 1.01 16 30 H 0.03 1.15 7.14 -2.38 -0.02 1.14 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 1.86 7.73 -2.38 -0.02 1.85 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 1.66 7.55 -2.39 -0.02 1.65 16 35 H 0.10 1.65 7.76 -2.39 -0.02 1.63 16 36 H 0.13 2.01 5.88 -2.91 -0.02 1.99 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.28 7.76 -2.39 -0.02 1.27 16 Total: -1.00 -67.30 350.59 1.21 -66.09 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.97 Total: 10.44 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.92 Total: -37.51 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -4.48 Total: -81.67 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -1.22 Total: -3.95 kcal Total: -67.30 1.21 -66.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174142335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.494 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds