Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48496 * 109.47401 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47300 * 30.00354 * 3 2 1 6 6 H 1.48505 * 109.46863 * 150.00173 * 3 2 1 7 7 C 1.38797 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47542 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47197 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.46947 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99776 * 269.99791 * 13 12 11 15 15 C 1.53001 * 109.47367 * 269.99917 * 14 13 12 16 16 C 1.52997 * 117.49923 * 243.62383 * 15 14 13 17 17 C 1.52998 * 117.49676 * 175.00041 * 15 14 13 18 18 C 1.39675 * 120.00236 * 90.00257 * 13 12 11 19 19 C 1.38914 * 120.07317 * 359.97438 * 18 13 12 20 20 C 1.38100 * 119.92419 * 179.97438 * 19 18 13 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47170 * 59.99755 * 10 9 7 26 26 H 1.09001 * 109.47523 * 300.00105 * 10 9 7 27 27 H 1.09002 * 109.46642 * 59.99818 * 11 10 9 28 28 H 1.08996 * 109.46830 * 300.00030 * 11 10 9 29 29 H 1.09001 * 109.47291 * 59.99822 * 12 11 10 30 30 H 1.08996 * 109.47306 * 299.99801 * 12 11 10 31 31 H 1.09001 * 109.47060 * 30.00465 * 14 13 12 32 32 H 1.09007 * 109.46721 * 150.00254 * 14 13 12 33 33 H 1.09003 * 115.54605 * 29.33525 * 15 14 13 34 34 H 1.09001 * 117.50019 * 359.97438 * 16 15 14 35 35 H 1.08997 * 117.49724 * 145.01868 * 16 15 14 36 36 H 1.09001 * 117.49495 * 214.97658 * 17 15 14 37 37 H 1.09005 * 117.50246 * 0.02562 * 17 15 14 38 38 H 1.07999 * 120.03471 * 359.95547 * 19 18 13 39 39 H 1.08000 * 119.95830 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 42 42 H 1.07999 * 120.04050 * 180.27354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0049 12 6 3.1514 -6.3076 -0.0064 13 7 2.6377 -7.6796 -0.0076 14 6 2.3814 -8.3669 1.2606 15 6 3.6431 -9.1121 1.7009 16 6 3.5684 -10.6377 1.7877 17 6 3.6164 -9.8001 3.0672 18 6 2.3923 -8.3324 -1.2178 19 6 2.6344 -7.6820 -2.4212 20 6 2.3912 -8.3306 -3.6159 21 6 1.9077 -9.6262 -3.6152 22 6 1.6607 -10.2747 -2.4191 23 6 1.9070 -9.6340 -1.2207 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7321 0.8872 26 1 3.1245 -3.7305 -0.8928 27 1 1.3710 -5.4832 -0.8953 28 1 1.3705 -5.4854 0.8847 29 1 3.7602 -6.1488 0.8837 30 1 3.7599 -6.1464 -0.8962 31 1 2.1071 -7.6358 2.0211 32 1 1.5661 -9.0786 1.1298 33 1 4.5862 -8.6715 1.3775 34 1 2.6203 -11.1106 1.5315 35 1 4.4625 -11.2013 1.5212 36 1 4.5422 -9.8127 3.6424 37 1 2.6999 -9.7224 3.6522 38 1 3.0120 -6.6702 -2.4223 39 1 2.5796 -7.8256 -4.5518 40 1 1.7180 -10.1309 -4.5510 41 1 1.2786 -11.2849 -2.4222 42 1 1.7181 -10.1426 -0.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177174991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = 42.188577 kcal Electronic energy + Delta-G solvation = -20135.598995 eV Core-core repulsion = 17207.025340 eV Total energy + Delta-G solvation = -2928.573656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77393 -37.74269 -36.11595 -32.96957 -32.42119 -30.84115 -29.68045 -27.45585 -25.64016 -24.72774 -22.72923 -22.31801 -21.67657 -21.12663 -19.94595 -17.81961 -17.46428 -16.17084 -15.64725 -15.14858 -14.89102 -14.84367 -14.80686 -14.20165 -14.00020 -13.66673 -13.45361 -13.29489 -12.82026 -12.51171 -12.12259 -11.90356 -11.77851 -11.71134 -11.59782 -11.27004 -11.07320 -10.90207 -10.78961 -10.68503 -10.57494 -10.36904 -10.15599 -9.94251 -9.46125 -9.06109 -8.83154 -8.30720 -7.21215 -6.53182 -6.22885 -3.93311 1.53090 1.70443 3.02514 3.21610 3.23231 3.29084 3.58379 3.63574 3.99041 4.22278 4.50873 4.67353 4.74632 4.89443 4.98169 5.10280 5.13209 5.18387 5.25034 5.33078 5.36837 5.40587 5.49184 5.53867 5.58569 5.64280 5.66446 5.71476 5.76278 5.86739 5.88341 5.99320 6.02435 6.10731 6.32130 6.38743 6.51957 6.58097 6.71506 6.74822 6.95563 7.34870 7.59375 7.60220 8.36309 9.23347 10.85245 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.003261 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.811447 B = 8583.373658 C = 9693.180196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.115 4.115 12 C 0.126 3.874 13 N -0.621 5.621 14 C 0.153 3.847 15 C -0.168 4.168 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.223 3.777 19 C -0.194 4.194 20 C -0.073 4.073 21 C -0.186 4.186 22 C -0.077 4.077 23 C -0.198 4.198 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -21.500 0.125 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.155 4.155 12 C 0.002 3.998 13 N -0.330 5.330 14 C 0.029 3.971 15 C -0.188 4.188 16 C -0.215 4.215 17 C -0.216 4.216 18 C 0.121 3.879 19 C -0.217 4.217 20 C -0.092 4.092 21 C -0.206 4.206 22 C -0.096 4.096 23 C -0.221 4.221 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.149 -21.465 0.302 22.076 hybrid contribution 1.889 1.334 0.026 2.313 sum 7.038 -20.131 0.328 21.328 Atomic orbital electron populations 1.70027 1.05926 1.27315 1.47261 1.25016 0.95074 0.99087 0.94616 0.86172 0.79440 0.81568 0.78377 1.20260 1.20765 1.19686 1.22691 0.94508 0.90817 1.58472 0.90973 1.84677 1.09481 0.99371 1.96841 1.23200 1.02938 0.97198 1.02775 1.21710 0.97867 0.92763 1.03126 1.21564 0.95947 0.79798 1.02534 1.46588 1.70528 1.13440 1.02407 1.20978 0.94606 0.96062 0.85430 1.22904 1.00861 0.94683 1.00338 1.23004 1.03036 0.93555 1.01867 1.22947 1.03303 1.04647 0.90688 1.17847 0.92860 0.91324 0.85834 1.20792 1.08518 1.01200 0.91157 1.20894 0.96597 0.94442 0.97261 1.20846 1.06188 0.95947 0.97638 1.20822 0.97689 0.98942 0.92138 1.20651 1.08439 0.94589 0.98394 0.92311 0.92155 0.92136 0.91264 0.91560 0.90900 0.90748 0.90110 0.90645 0.87718 0.88866 0.89091 0.88871 0.88660 0.85816 0.86414 0.86907 0.86718 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 10 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.11 -1.85 5.54 -26.73 -0.15 -2.00 16 12 C 0.13 1.63 5.16 -4.04 -0.02 1.61 16 13 N -0.62 -7.53 2.61 -171.75 -0.45 -7.98 16 14 C 0.15 1.57 5.44 -4.04 -0.02 1.54 16 15 C -0.17 -1.55 6.01 -90.62 -0.54 -2.09 16 16 C -0.18 -1.43 9.94 -26.73 -0.27 -1.70 16 17 C -0.18 -1.40 10.25 -26.73 -0.27 -1.67 16 18 C 0.22 2.88 6.55 -83.79 -0.55 2.33 16 19 C -0.19 -2.57 9.21 -39.38 -0.36 -2.93 16 20 C -0.07 -0.88 10.04 -39.61 -0.40 -1.28 16 21 C -0.19 -2.09 10.04 -39.55 -0.40 -2.48 16 22 C -0.08 -0.85 10.04 -39.61 -0.40 -1.24 16 23 C -0.20 -2.32 9.21 -39.38 -0.36 -2.68 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 31 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.08 0.73 5.93 -51.92 -0.31 0.42 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.70 7.51 -51.93 -0.39 0.31 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 1.64 6.14 -52.49 -0.32 1.31 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.21 5.37 -52.49 -0.28 0.93 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -31.08 358.95 -11.62 -42.70 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.66 Total: 1.67 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.33 Total: -27.20 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.29 Total: -33.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.08 -11.62 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.890 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds