Wall clock time and date at job start Tue Mar 31 2020 07:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48496 * 109.47401 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47300 * 30.00354 * 3 2 1 6 6 H 1.48505 * 109.46863 * 150.00173 * 3 2 1 7 7 C 1.38797 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47542 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47197 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.46947 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99776 * 269.99791 * 13 12 11 15 15 C 1.53001 * 109.47367 * 269.99917 * 14 13 12 16 16 C 1.52997 * 117.49923 * 243.62383 * 15 14 13 17 17 C 1.52998 * 117.49676 * 175.00041 * 15 14 13 18 18 C 1.39675 * 120.00236 * 90.00257 * 13 12 11 19 19 C 1.38914 * 120.07317 * 359.97438 * 18 13 12 20 20 C 1.38100 * 119.92419 * 179.97438 * 19 18 13 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47170 * 59.99755 * 10 9 7 26 26 H 1.09001 * 109.47523 * 300.00105 * 10 9 7 27 27 H 1.09002 * 109.46642 * 59.99818 * 11 10 9 28 28 H 1.08996 * 109.46830 * 300.00030 * 11 10 9 29 29 H 1.09001 * 109.47291 * 59.99822 * 12 11 10 30 30 H 1.08996 * 109.47306 * 299.99801 * 12 11 10 31 31 H 1.09001 * 109.47060 * 30.00465 * 14 13 12 32 32 H 1.09007 * 109.46721 * 150.00254 * 14 13 12 33 33 H 1.09003 * 115.54605 * 29.33525 * 15 14 13 34 34 H 1.09001 * 117.50019 * 359.97438 * 16 15 14 35 35 H 1.08997 * 117.49724 * 145.01868 * 16 15 14 36 36 H 1.09001 * 117.49495 * 214.97658 * 17 15 14 37 37 H 1.09005 * 117.50246 * 0.02562 * 17 15 14 38 38 H 1.07999 * 120.03471 * 359.95547 * 19 18 13 39 39 H 1.08000 * 119.95830 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 42 42 H 1.07999 * 120.04050 * 180.27354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0049 12 6 3.1514 -6.3076 -0.0064 13 7 2.6377 -7.6796 -0.0076 14 6 2.3814 -8.3669 1.2606 15 6 3.6431 -9.1121 1.7009 16 6 3.5684 -10.6377 1.7877 17 6 3.6164 -9.8001 3.0672 18 6 2.3923 -8.3324 -1.2178 19 6 2.6344 -7.6820 -2.4212 20 6 2.3912 -8.3306 -3.6159 21 6 1.9077 -9.6262 -3.6152 22 6 1.6607 -10.2747 -2.4191 23 6 1.9070 -9.6340 -1.2207 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7321 0.8872 26 1 3.1245 -3.7305 -0.8928 27 1 1.3710 -5.4832 -0.8953 28 1 1.3705 -5.4854 0.8847 29 1 3.7602 -6.1488 0.8837 30 1 3.7599 -6.1464 -0.8962 31 1 2.1071 -7.6358 2.0211 32 1 1.5661 -9.0786 1.1298 33 1 4.5862 -8.6715 1.3775 34 1 2.6203 -11.1106 1.5315 35 1 4.4625 -11.2013 1.5212 36 1 4.5422 -9.8127 3.6424 37 1 2.6999 -9.7224 3.6522 38 1 3.0120 -6.6702 -2.4223 39 1 2.5796 -7.8256 -4.5518 40 1 1.7180 -10.1309 -4.5510 41 1 1.2786 -11.2849 -2.4222 42 1 1.7181 -10.1426 -0.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177174991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:03 Heat of formation + Delta-G solvation = 28.362442 kcal Electronic energy + Delta-G solvation = -20136.198542 eV Core-core repulsion = 17207.025340 eV Total energy + Delta-G solvation = -2929.173202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67239 -38.49845 -37.06768 -34.62555 -34.17689 -31.75403 -30.58463 -28.57427 -27.72022 -25.83654 -23.55168 -23.14830 -22.78565 -22.01737 -20.83471 -19.57049 -18.72093 -17.10350 -16.90173 -16.62117 -16.14490 -15.98723 -15.83961 -15.65157 -15.01740 -14.87053 -14.55402 -14.34398 -14.04963 -13.64162 -13.32738 -13.27532 -13.11776 -12.89469 -12.68851 -12.65019 -12.43728 -12.33886 -12.13044 -11.82923 -11.67883 -11.47643 -11.26860 -11.15007 -10.83650 -10.65468 -10.31822 -9.73774 -8.67780 -8.38096 -8.15167 -6.14434 0.62407 0.79411 1.30897 1.39013 1.48269 1.71950 2.17278 2.29189 2.95262 2.96459 3.08287 3.31416 3.78884 3.87174 3.96062 4.08179 4.11275 4.18041 4.22266 4.32693 4.37834 4.40943 4.47909 4.54966 4.67871 4.70999 4.74893 4.76671 4.82090 4.88352 4.94178 5.05221 5.08004 5.24334 5.27588 5.27856 5.30314 5.39157 5.48846 5.69693 5.82869 6.07923 6.17556 6.41203 6.66095 7.04338 8.71586 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.003261 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.811447 B = 8583.373658 C = 9693.180196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.202 6.202 10 C -0.085 4.085 11 C -0.099 4.099 12 C 0.138 3.862 13 N -0.623 5.623 14 C 0.152 3.848 15 C -0.177 4.177 16 C -0.173 4.173 17 C -0.171 4.171 18 C 0.207 3.793 19 C -0.217 4.217 20 C -0.085 4.085 21 C -0.191 4.191 22 C -0.080 4.080 23 C -0.203 4.203 24 H 0.271 0.729 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -22.663 0.318 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.027 5.973 10 C -0.235 4.235 11 C -0.139 4.139 12 C 0.012 3.988 13 N -0.331 5.331 14 C 0.029 3.971 15 C -0.197 4.197 16 C -0.210 4.210 17 C -0.208 4.208 18 C 0.105 3.895 19 C -0.239 4.239 20 C -0.104 4.104 21 C -0.211 4.211 22 C -0.098 4.098 23 C -0.225 4.225 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.250 -22.655 0.496 23.507 hybrid contribution 1.532 1.571 -0.064 2.196 sum 7.782 -21.084 0.432 22.478 Atomic orbital electron populations 1.70164 1.07735 1.28529 1.48057 1.26082 0.96025 1.03158 0.93764 0.85012 0.78215 0.76330 0.78830 1.19315 1.19948 1.18579 1.23042 0.94750 0.91929 1.58786 0.90809 1.84711 1.14269 1.01302 1.97041 1.23114 1.00130 0.97082 1.03164 1.21579 0.98891 0.91342 1.02109 1.21344 0.94372 0.79715 1.03329 1.46578 1.70676 1.12914 1.02977 1.21066 0.95391 0.96114 0.84479 1.22747 0.99715 0.95438 1.01792 1.23064 1.03558 0.92665 1.01721 1.23018 1.03956 1.03537 0.90330 1.18050 0.93488 0.92062 0.85867 1.20888 1.09760 1.01210 0.92055 1.21140 0.96674 0.95130 0.97414 1.21163 1.05458 0.95645 0.98826 1.21187 0.96863 1.00057 0.91693 1.20880 1.08041 0.94174 0.99441 0.91990 0.91443 0.91807 0.92773 0.92033 0.89572 0.90476 0.90341 0.90019 0.88854 0.88139 0.88815 0.88305 0.87961 0.86710 0.85297 0.84849 0.84117 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -31.21 9.50 67.95 0.65 -30.56 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.86 21.44 -56.49 -1.21 -12.08 16 10 C -0.09 -3.40 5.67 71.98 0.41 -2.99 16 11 C -0.10 -3.21 5.54 30.59 0.17 -3.04 16 12 C 0.14 3.47 5.16 86.38 0.45 3.92 16 13 N -0.62 -14.65 2.61 -697.29 -1.82 -16.47 16 14 C 0.15 2.94 5.44 86.38 0.47 3.41 16 15 C -0.18 -3.01 6.01 -10.79 -0.06 -3.08 16 16 C -0.17 -2.44 9.94 30.59 0.30 -2.14 16 17 C -0.17 -2.35 10.25 30.59 0.31 -2.03 16 18 C 0.21 5.20 6.55 38.21 0.25 5.45 16 19 C -0.22 -5.71 9.21 22.40 0.21 -5.50 16 20 C -0.08 -1.99 10.04 22.25 0.22 -1.77 16 21 C -0.19 -3.95 10.04 22.29 0.22 -3.73 16 22 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 23 C -0.20 -4.42 9.21 22.40 0.21 -4.22 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 25 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.08 1.92 6.20 -2.39 -0.01 1.91 16 31 H 0.08 1.53 8.07 -2.39 -0.02 1.51 16 32 H 0.08 1.46 5.93 -2.38 -0.01 1.44 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.27 7.51 -2.39 -0.02 1.25 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.11 3.11 6.14 -2.91 -0.02 3.09 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.13 2.42 5.37 -2.91 -0.02 2.40 16 Total: -1.00 -67.36 358.95 4.76 -62.60 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.98 Total: 21.23 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 4.49 Total: -46.32 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.53 Total: -71.54 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.21 Total: -12.08 kcal Total: -67.36 4.76 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.966 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds