Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99863 * 2 1 4 4 C 1.50693 * 109.47571 * 269.99847 * 3 2 1 5 5 H 1.08007 * 119.99820 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00257 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99872 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00036 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47049 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47395 * 120.00132 * 8 6 4 11 11 H 1.48502 * 109.47338 * 240.00277 * 8 6 4 12 12 C 1.34777 * 119.99829 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99687 * 185.49793 * 12 2 1 14 14 C 1.50695 * 119.99931 * 5.50438 * 12 2 1 15 15 C 1.50698 * 112.85273 * 67.19475 * 14 12 2 16 16 C 1.38248 * 119.97394 * 237.17230 * 15 14 12 17 17 C 1.38200 * 120.02606 * 179.97438 * 16 15 14 18 18 C 1.38458 * 119.97011 * 0.02562 * 17 16 15 19 19 F 1.35101 * 120.02243 * 179.97438 * 18 17 16 20 20 C 1.38456 * 119.95232 * 359.97438 * 18 17 16 21 21 C 1.38192 * 119.97344 * 359.97438 * 20 18 17 22 22 C 1.53785 * 113.61464 * 198.38974 * 14 12 2 23 23 C 1.53961 * 87.02037 * 89.22701 * 22 14 12 24 24 C 1.53779 * 113.61362 * 295.99444 * 14 12 2 25 25 H 1.09000 * 109.47011 * 264.85836 * 1 2 3 26 26 H 1.08996 * 109.46757 * 24.85618 * 1 2 3 27 27 H 1.08999 * 109.47225 * 144.85587 * 1 2 3 28 28 H 1.08999 * 109.47173 * 30.00593 * 3 2 1 29 29 H 1.09009 * 109.46793 * 149.99863 * 3 2 1 30 30 H 0.97002 * 119.99395 * 179.97438 * 7 6 4 31 31 H 1.07996 * 119.98623 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.01407 * 180.27894 * 17 16 15 33 33 H 1.08006 * 120.01238 * 180.02562 * 20 18 17 34 34 H 1.08006 * 119.98776 * 180.02562 * 21 20 18 35 35 H 1.08992 * 113.61916 * 203.74851 * 22 14 12 36 36 H 1.09001 * 113.61349 * 334.65237 * 22 14 12 37 37 H 1.09003 * 113.53631 * 270.81751 * 23 22 14 38 38 H 1.08998 * 113.74428 * 139.94308 * 23 22 14 39 39 H 1.08997 * 113.61525 * 25.35451 * 24 14 12 40 40 H 1.09008 * 113.61658 * 156.16658 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4368 3.4177 -3.4337 9 1 2.8589 2.4177 -4.3672 10 1 2.7988 4.7382 -3.6668 11 1 4.8993 3.5265 -3.6674 12 6 2.1389 -1.1672 -0.0005 13 8 3.3476 -1.1697 0.1001 14 6 1.3906 -2.4692 -0.1263 15 6 0.7413 -2.6431 -1.4750 16 6 -0.6222 -2.8538 -1.5632 17 6 -1.2189 -3.0129 -2.7995 18 6 -0.4504 -2.9617 -3.9501 19 9 -1.0326 -3.1176 -5.1593 20 6 0.9150 -2.7506 -3.8606 21 6 1.5093 -2.5907 -2.6233 22 6 2.2030 -3.6931 0.3286 23 6 1.6366 -3.4446 1.7385 24 6 0.4459 -2.7532 1.0534 25 1 -0.3633 -0.0921 1.0235 26 1 -0.3633 0.9324 -0.4320 27 1 -0.3633 -0.8403 -0.5916 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5139 30 1 4.0302 4.4441 -0.8502 31 1 -1.2213 -2.8942 -0.6655 32 1 -2.2847 -3.1730 -2.8684 33 1 1.5153 -2.7100 -4.7576 34 1 2.5743 -2.4256 -2.5532 35 1 1.8686 -4.6296 -0.1175 36 1 3.2816 -3.5515 0.2593 37 1 2.2461 -2.7701 2.3399 38 1 1.3651 -4.3569 2.2695 39 1 0.1079 -1.8539 1.5684 40 1 -0.3708 -3.4311 0.8055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247950712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -29.669423 kcal Electronic energy + Delta-G solvation = -23909.112264 eV Core-core repulsion = 20411.209436 eV Total energy + Delta-G solvation = -3497.902828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.85941 -40.93453 -38.37181 -36.87824 -34.86747 -32.60244 -31.18454 -30.84129 -28.04075 -26.43861 -25.62280 -25.24990 -23.16276 -22.67705 -21.74337 -20.24664 -17.95471 -17.77939 -16.73195 -16.44000 -16.17318 -15.61128 -15.49797 -15.44542 -14.80596 -14.49028 -14.02167 -13.99001 -13.60282 -13.30085 -12.96076 -12.73280 -12.37646 -12.26922 -12.11271 -12.02095 -11.80771 -11.69100 -11.19841 -11.04741 -10.88885 -10.73248 -10.59237 -10.40179 -10.18366 -10.16444 -9.62932 -9.09473 -9.06680 -8.45278 -8.35025 -7.64263 -6.05982 -4.10682 1.13769 1.25419 3.28230 3.28456 3.36355 3.41188 3.57367 3.88925 4.27187 4.42337 4.53686 4.68696 4.70875 4.79903 4.88140 4.90822 5.05975 5.26714 5.28621 5.43718 5.50841 5.66737 5.72079 5.74447 5.86102 5.92394 5.98323 6.01811 6.11757 6.17310 6.18587 6.26782 6.28866 6.44261 6.55810 6.89752 7.04817 7.42550 7.52864 7.90860 8.21670 8.39740 8.87865 9.05756 9.54677 11.02099 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006622 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.882821 B = 4227.027543 C = 5722.199076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.593 5.593 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.535 3.465 13 O -0.537 6.537 14 C -0.068 4.068 15 C -0.063 4.063 16 C -0.091 4.091 17 C -0.153 4.153 18 C 0.091 3.909 19 F -0.144 7.144 20 C -0.147 4.147 21 C -0.072 4.072 22 C -0.113 4.113 23 C -0.139 4.139 24 C -0.134 4.134 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -15.109 0.551 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.324 5.324 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.320 3.680 13 O -0.415 6.415 14 C -0.071 4.071 15 C -0.064 4.064 16 C -0.109 4.109 17 C -0.172 4.172 18 C 0.071 3.929 19 F -0.123 7.123 20 C -0.166 4.166 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.176 4.176 24 C -0.171 4.171 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.645 -14.894 0.604 17.754 hybrid contribution -0.023 0.577 -1.372 1.489 sum -9.668 -14.316 -0.768 17.292 Atomic orbital electron populations 1.21905 0.81616 1.03275 1.00114 1.48020 1.06136 1.07506 1.70699 1.19333 0.92642 0.77997 0.97559 1.21464 1.36371 1.06296 0.92261 0.92404 1.24927 0.95381 0.96378 0.97362 1.69945 1.38426 1.14335 1.30629 0.86478 0.78093 0.78416 0.84692 1.19762 1.20922 1.20833 1.19408 0.87280 0.83944 0.77338 1.90654 1.13879 1.86725 1.50232 1.20988 0.98068 0.95902 0.92180 1.19454 0.93391 0.99670 0.93883 1.20919 0.93950 0.98813 0.97180 1.21042 1.00364 1.04406 0.91406 1.17719 0.91573 1.03229 0.80333 1.91479 1.84688 1.93222 1.42882 1.21135 0.93114 1.02998 0.99317 1.20971 1.00973 0.96255 0.90825 1.22873 1.01246 0.95425 0.95544 1.22828 0.97437 1.00761 0.96598 1.23192 0.96913 1.01484 0.95506 0.93737 0.90896 0.91720 0.94988 0.93700 0.92762 0.84564 0.84830 0.84766 0.84714 0.89704 0.89566 0.89821 0.91147 0.90284 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 9.08 59.85 0.54 1.76 16 2 N -0.59 -12.53 2.86 -182.95 -0.52 -13.05 16 3 C 0.24 6.37 5.18 -5.20 -0.03 6.35 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.54 10.91 6.06 -10.99 -0.07 10.84 16 13 O -0.54 -13.19 15.51 5.56 0.09 -13.10 16 14 C -0.07 -1.01 0.47 -156.00 -0.07 -1.08 16 15 C -0.06 -0.89 3.91 -104.62 -0.41 -1.30 16 16 C -0.09 -1.05 7.34 -39.59 -0.29 -1.34 16 17 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 18 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 19 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 20 C -0.15 -2.06 10.03 -39.52 -0.40 -2.45 16 21 C -0.07 -1.10 9.39 -39.60 -0.37 -1.47 16 22 C -0.11 -1.50 7.10 -25.82 -0.18 -1.68 16 23 C -0.14 -1.65 7.81 -25.82 -0.20 -1.85 16 24 C -0.13 -1.54 5.67 -25.92 -0.15 -1.68 16 25 H 0.04 0.61 6.93 -51.93 -0.36 0.25 16 26 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 27 H 0.06 0.92 3.79 -51.93 -0.20 0.73 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.32 7.35 -51.92 -0.38 0.94 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.14 1.22 5.99 -52.49 -0.31 0.90 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 35 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.09 1.32 7.35 -51.93 -0.38 0.94 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.93 5.94 -51.93 -0.31 0.62 16 40 H 0.09 0.81 6.31 -51.92 -0.33 0.49 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -32.50 328.41 -7.65 -40.14 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.19 Total: 0.60 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.73 Total: -8.70 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.90 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.50 -7.65 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247950712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.475 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds