Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99863 * 2 1 4 4 C 1.50693 * 109.47571 * 269.99847 * 3 2 1 5 5 H 1.08007 * 119.99820 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00257 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99872 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00036 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47049 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47395 * 120.00132 * 8 6 4 11 11 H 1.48502 * 109.47338 * 240.00277 * 8 6 4 12 12 C 1.34777 * 119.99829 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99687 * 185.49793 * 12 2 1 14 14 C 1.50695 * 119.99931 * 5.50438 * 12 2 1 15 15 C 1.50698 * 112.85273 * 67.19475 * 14 12 2 16 16 C 1.38248 * 119.97394 * 237.17230 * 15 14 12 17 17 C 1.38200 * 120.02606 * 179.97438 * 16 15 14 18 18 C 1.38458 * 119.97011 * 0.02562 * 17 16 15 19 19 F 1.35101 * 120.02243 * 179.97438 * 18 17 16 20 20 C 1.38456 * 119.95232 * 359.97438 * 18 17 16 21 21 C 1.38192 * 119.97344 * 359.97438 * 20 18 17 22 22 C 1.53785 * 113.61464 * 198.38974 * 14 12 2 23 23 C 1.53961 * 87.02037 * 89.22701 * 22 14 12 24 24 C 1.53779 * 113.61362 * 295.99444 * 14 12 2 25 25 H 1.09000 * 109.47011 * 264.85836 * 1 2 3 26 26 H 1.08996 * 109.46757 * 24.85618 * 1 2 3 27 27 H 1.08999 * 109.47225 * 144.85587 * 1 2 3 28 28 H 1.08999 * 109.47173 * 30.00593 * 3 2 1 29 29 H 1.09009 * 109.46793 * 149.99863 * 3 2 1 30 30 H 0.97002 * 119.99395 * 179.97438 * 7 6 4 31 31 H 1.07996 * 119.98623 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.01407 * 180.27894 * 17 16 15 33 33 H 1.08006 * 120.01238 * 180.02562 * 20 18 17 34 34 H 1.08006 * 119.98776 * 180.02562 * 21 20 18 35 35 H 1.08992 * 113.61916 * 203.74851 * 22 14 12 36 36 H 1.09001 * 113.61349 * 334.65237 * 22 14 12 37 37 H 1.09003 * 113.53631 * 270.81751 * 23 22 14 38 38 H 1.08998 * 113.74428 * 139.94308 * 23 22 14 39 39 H 1.08997 * 113.61525 * 25.35451 * 24 14 12 40 40 H 1.09008 * 113.61658 * 156.16658 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4368 3.4177 -3.4337 9 1 2.8589 2.4177 -4.3672 10 1 2.7988 4.7382 -3.6668 11 1 4.8993 3.5265 -3.6674 12 6 2.1389 -1.1672 -0.0005 13 8 3.3476 -1.1697 0.1001 14 6 1.3906 -2.4692 -0.1263 15 6 0.7413 -2.6431 -1.4750 16 6 -0.6222 -2.8538 -1.5632 17 6 -1.2189 -3.0129 -2.7995 18 6 -0.4504 -2.9617 -3.9501 19 9 -1.0326 -3.1176 -5.1593 20 6 0.9150 -2.7506 -3.8606 21 6 1.5093 -2.5907 -2.6233 22 6 2.2030 -3.6931 0.3286 23 6 1.6366 -3.4446 1.7385 24 6 0.4459 -2.7532 1.0534 25 1 -0.3633 -0.0921 1.0235 26 1 -0.3633 0.9324 -0.4320 27 1 -0.3633 -0.8403 -0.5916 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5139 30 1 4.0302 4.4441 -0.8502 31 1 -1.2213 -2.8942 -0.6655 32 1 -2.2847 -3.1730 -2.8684 33 1 1.5153 -2.7100 -4.7576 34 1 2.5743 -2.4256 -2.5532 35 1 1.8686 -4.6296 -0.1175 36 1 3.2816 -3.5515 0.2593 37 1 2.2461 -2.7701 2.3399 38 1 1.3651 -4.3569 2.2695 39 1 0.1079 -1.8539 1.5684 40 1 -0.3708 -3.4311 0.8055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247950712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -48.713122 kcal Electronic energy + Delta-G solvation = -23909.938061 eV Core-core repulsion = 20411.209436 eV Total energy + Delta-G solvation = -3498.728625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89572 -42.17121 -39.64741 -38.14827 -36.63616 -34.72873 -32.19072 -31.91787 -29.97458 -27.77163 -26.80354 -26.61583 -24.86605 -23.80908 -22.81559 -21.61671 -19.34864 -18.85484 -18.66857 -17.88361 -17.30012 -17.18470 -16.71017 -16.59486 -16.41587 -15.88361 -15.51120 -15.27197 -14.59446 -14.46827 -14.35982 -14.08126 -13.96853 -13.58623 -13.53930 -13.43557 -13.16910 -12.96121 -12.85757 -12.67828 -12.53380 -12.24983 -12.04969 -11.78581 -11.72604 -11.41747 -11.22325 -10.68408 -10.63734 -10.07482 -9.51392 -9.38888 -8.26140 -6.40718 0.08824 0.24935 1.31944 1.33816 1.45626 1.75474 2.27184 2.39587 2.56307 3.03215 3.26030 3.46529 3.60574 3.64990 3.72686 3.83880 3.95206 3.96046 4.28861 4.39582 4.42002 4.50310 4.62795 4.78457 4.82617 4.91222 4.95315 4.97857 5.00596 5.06945 5.12734 5.14947 5.16656 5.19820 5.25695 5.49486 5.51662 5.54298 5.81914 5.89406 6.02769 6.66699 6.76577 7.24535 7.44341 8.81082 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006622 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.882821 B = 4227.027543 C = 5722.199076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.601 5.601 3 C 0.258 3.742 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.267 1.267 11 H -0.280 1.280 12 C 0.527 3.473 13 O -0.595 6.595 14 C -0.070 4.070 15 C -0.072 4.072 16 C -0.078 4.078 17 C -0.139 4.139 18 C 0.080 3.920 19 F -0.147 7.147 20 C -0.158 4.158 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.135 4.135 24 C -0.117 4.117 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.024 0.976 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -16.738 0.258 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C 0.137 3.863 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.206 1.206 12 C 0.315 3.685 13 O -0.477 6.477 14 C -0.073 4.073 15 C -0.073 4.073 16 C -0.095 4.095 17 C -0.157 4.157 18 C 0.061 3.939 19 F -0.126 7.126 20 C -0.177 4.177 21 C -0.116 4.116 22 C -0.152 4.152 23 C -0.173 4.173 24 C -0.154 4.154 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.195 0.805 32 H 0.187 0.813 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.281 -16.536 0.315 21.212 hybrid contribution 1.132 1.067 -1.282 2.015 sum -12.149 -15.470 -0.967 19.694 Atomic orbital electron populations 1.22193 0.78306 1.03921 1.02725 1.48023 1.08194 1.06118 1.70771 1.18782 0.91178 0.80350 0.95994 1.21681 1.36723 1.06498 0.92911 0.93210 1.25810 0.94933 0.96413 1.01756 1.70053 1.38928 1.14824 1.32846 0.85440 0.77994 0.78502 0.79361 1.19395 1.19199 1.20577 1.20451 0.87001 0.85566 0.75486 1.90613 1.16774 1.87807 1.52481 1.20883 0.99312 0.92699 0.94405 1.19478 0.94648 1.00589 0.92569 1.21274 0.92552 0.96907 0.98765 1.21440 1.01874 1.02098 0.90326 1.17910 0.91363 1.03557 0.81039 1.91475 1.84554 1.93274 1.43250 1.21178 0.94055 1.03473 0.98966 1.20863 0.99968 0.98450 0.92317 1.22958 0.99218 0.95983 0.97034 1.22789 0.97107 1.01754 0.95620 1.23301 0.97132 1.02277 0.92692 0.90352 0.91856 0.89140 0.95770 0.98342 0.92341 0.80527 0.81308 0.84629 0.87753 0.86741 0.93026 0.92714 0.87641 0.90160 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.16 9.08 127.77 1.16 3.32 16 2 N -0.60 -25.98 2.86 -851.13 -2.43 -28.41 16 3 C 0.26 14.23 5.18 85.63 0.44 14.67 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.58 5.46 84.65 0.46 1.05 16 7 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 8 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.53 22.25 6.06 87.66 0.53 22.78 16 13 O -0.60 -31.54 15.51 -3.03 -0.05 -31.59 16 14 C -0.07 -1.98 0.47 -53.15 -0.03 -2.01 16 15 C -0.07 -1.89 3.91 -19.86 -0.08 -1.97 16 16 C -0.08 -1.41 7.34 22.26 0.16 -1.25 16 17 C -0.14 -2.57 10.03 22.31 0.22 -2.35 16 18 C 0.08 1.96 7.30 22.37 0.16 2.13 16 19 F -0.15 -3.70 17.27 44.97 0.78 -2.92 16 20 C -0.16 -4.38 10.03 22.31 0.22 -4.16 16 21 C -0.10 -3.02 9.39 22.26 0.21 -2.81 16 22 C -0.11 -2.93 7.10 31.18 0.22 -2.71 16 23 C -0.14 -2.90 7.81 31.18 0.24 -2.66 16 24 C -0.12 -2.21 5.67 31.12 0.18 -2.03 16 25 H 0.08 1.89 6.93 -2.39 -0.02 1.87 16 26 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 27 H 0.09 2.27 3.79 -2.39 -0.01 2.27 16 28 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 29 H 0.00 -0.10 7.35 -2.38 -0.02 -0.12 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.18 1.79 5.99 -2.91 -0.02 1.78 16 32 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.10 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.11 2.24 8.09 -2.39 -0.02 2.22 16 36 H 0.05 1.68 7.35 -2.39 -0.02 1.66 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.55 5.94 -2.39 -0.01 1.53 16 40 H 0.14 1.42 6.31 -2.38 -0.02 1.40 16 Total: -1.00 -76.95 328.41 6.02 -70.93 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.05 Total: 10.06 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.36 Total: -9.47 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.15 Total: -84.85 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.95 6.02 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247950712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.220 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds