Wall clock time and date at job start Tue Mar 31 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 120.00251 * 2 1 4 4 H 1.07998 * 120.00645 * 188.75884 * 3 2 1 5 5 C 1.38949 * 119.99493 * 8.75814 * 3 2 1 6 6 N 1.31408 * 120.00669 * 8.80540 * 5 3 2 7 7 Si 1.86811 * 119.99743 * 188.79585 * 5 3 2 8 8 H 1.48490 * 109.46897 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46741 * 120.00403 * 7 5 3 10 10 H 1.48501 * 109.47035 * 240.00259 * 7 5 3 11 11 C 1.34770 * 120.00207 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00650 * 184.19197 * 11 2 1 13 13 C 1.50703 * 119.99856 * 4.18628 * 11 2 1 14 14 C 1.50697 * 110.01625 * 61.67286 * 13 11 2 15 15 C 1.38265 * 119.99119 * 187.69995 * 14 13 11 16 16 C 1.38227 * 120.05451 * 179.76486 * 15 14 13 17 17 C 1.38217 * 120.02431 * 0.51032 * 16 15 14 18 18 C 1.38440 * 119.97548 * 359.74655 * 17 16 15 19 19 F 1.35089 * 120.02868 * 179.97438 * 18 17 16 20 20 C 1.38180 * 119.98706 * 7.97674 * 14 13 11 21 21 C 1.54274 * 110.03320 * 183.06111 * 13 11 2 22 22 C 1.54965 * 104.15581 * 95.75472 * 21 13 11 23 23 C 1.54889 * 102.77569 * 37.89137 * 22 21 13 24 24 C 1.53871 * 110.03419 * 300.28175 * 13 11 2 25 25 H 1.09001 * 109.47285 * 174.65631 * 1 2 3 26 26 H 1.09010 * 109.46840 * 294.65281 * 1 2 3 27 27 H 1.08998 * 109.47166 * 54.65051 * 1 2 3 28 28 H 0.96995 * 120.00251 * 179.97438 * 6 5 3 29 29 H 1.08006 * 119.97037 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.98386 * 180.25666 * 16 15 14 31 31 H 1.07996 * 120.01230 * 179.76697 * 17 16 15 32 32 H 1.07998 * 120.01333 * 359.95674 * 20 14 13 33 33 H 1.09006 * 110.48410 * 214.40183 * 21 13 11 34 34 H 1.09000 * 110.48664 * 337.04762 * 21 13 11 35 35 H 1.08994 * 110.71974 * 279.57234 * 22 21 13 36 36 H 1.09003 * 110.92122 * 156.29452 * 22 21 13 37 37 H 1.09001 * 110.48379 * 203.39860 * 23 22 21 38 38 H 1.09001 * 110.60127 * 80.81898 * 23 22 21 39 39 H 1.09000 * 110.03228 * 359.94724 * 24 13 11 40 40 H 1.08998 * 110.03371 * 121.33417 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2211 1.1928 -0.1424 5 6 1.4679 2.3836 0.1832 6 7 0.1998 2.3705 0.5277 7 14 2.3529 4.0107 -0.0598 8 1 3.7643 3.7539 -0.4431 9 1 1.6811 4.7837 -1.1352 10 1 2.3165 4.7877 1.2051 11 6 2.1389 -1.1671 -0.0005 12 8 3.3494 -1.1687 0.0763 13 6 1.3884 -2.4705 -0.0964 14 6 0.6292 -2.5341 -1.3966 15 6 -0.2571 -3.5695 -1.6295 16 6 -0.9577 -3.6265 -2.8196 17 6 -0.7652 -2.6541 -3.7828 18 6 0.1259 -1.6198 -3.5530 19 9 0.3154 -0.6691 -4.4939 20 6 0.8234 -1.5609 -2.3581 21 6 2.3721 -3.6550 -0.0003 22 6 2.3354 -4.0577 1.4957 23 6 0.8426 -3.8712 1.8641 24 6 0.4165 -2.6075 1.0887 25 1 -0.3634 -1.0232 -0.0957 26 1 -0.3633 0.4287 0.9341 27 1 -0.3633 0.5946 -0.8382 28 1 -0.2766 3.2056 0.6559 29 1 -0.4052 -4.3320 -0.8790 30 1 -1.6529 -4.4335 -2.9986 31 1 -1.3099 -2.7009 -4.7141 32 1 1.5186 -0.7543 -2.1776 33 1 2.0359 -4.4818 -0.6262 34 1 3.3758 -3.3416 -0.2873 35 1 2.9655 -3.3951 2.0889 36 1 2.6387 -5.0965 1.6267 37 1 0.7310 -3.7160 2.9372 38 1 0.2574 -4.7323 1.5413 39 1 0.4883 -1.7318 1.7336 40 1 -0.6043 -2.7192 0.7234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263828511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:32 Heat of formation + Delta-G solvation = -42.183536 kcal Electronic energy + Delta-G solvation = -24629.755973 eV Core-core repulsion = 21131.310492 eV Total energy + Delta-G solvation = -3498.445481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.54463 -40.55036 -37.92539 -36.48742 -34.71381 -32.16361 -31.09537 -30.22712 -28.40066 -27.78154 -26.10693 -24.52130 -22.58472 -22.35209 -20.77525 -20.19284 -18.34414 -17.36709 -16.89120 -16.19404 -15.90278 -15.55037 -15.24354 -14.86633 -14.83230 -14.15564 -13.98547 -13.96038 -13.23757 -12.95401 -12.87914 -12.58599 -12.21466 -11.98276 -11.67588 -11.59718 -11.20539 -11.10441 -11.03922 -10.85188 -10.81451 -10.62011 -10.47570 -10.35807 -10.30667 -10.23171 -10.06129 -9.07263 -8.59823 -8.40324 -8.29550 -7.81540 -6.22930 -3.82555 1.39066 1.48747 3.14214 3.25263 3.32148 3.78922 3.83927 4.10421 4.49340 4.73438 4.81674 4.96265 5.02532 5.12117 5.22389 5.28209 5.32950 5.46642 5.68155 5.74562 5.79992 5.87782 5.94625 5.99399 6.04313 6.19127 6.20406 6.29858 6.31243 6.44263 6.46517 6.54787 6.60927 6.65799 6.73851 6.83527 7.06135 7.16864 7.42530 7.58112 8.07233 8.48485 9.18241 9.44478 9.97286 10.70147 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.007631 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.525591 B = 3668.228064 C = 4947.998165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.441 5.441 3 C -0.303 4.303 4 H 0.104 0.896 5 C 0.029 3.971 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.449 3.551 12 O -0.589 6.589 13 C -0.035 4.035 14 C -0.027 4.027 15 C -0.129 4.129 16 C -0.096 4.096 17 C -0.165 4.165 18 C 0.099 3.901 19 F -0.142 7.142 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.111 4.111 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -12.052 -2.655 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.431 4.431 4 H 0.121 0.879 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.754 3.246 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.237 3.763 12 O -0.474 6.474 13 C -0.038 4.038 14 C -0.028 4.028 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.184 4.184 18 C 0.080 3.920 19 F -0.120 7.120 20 C -0.157 4.157 21 C -0.138 4.138 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.742 -11.810 -2.615 12.992 hybrid contribution 0.069 1.270 -0.333 1.314 sum -4.674 -10.540 -2.948 11.901 Atomic orbital electron populations 1.22063 0.80520 0.97207 1.04225 1.43672 1.05940 1.04597 1.61632 1.19834 0.94184 0.82168 1.46882 0.87851 1.25295 0.95909 0.99727 0.96419 1.70097 1.09009 1.27243 1.46060 0.85842 0.79606 0.81273 0.77918 1.19232 1.20649 1.20730 1.19526 0.87768 0.84201 0.84796 1.90493 1.13981 1.86499 1.56452 1.20309 0.95165 0.96398 0.91939 1.19563 0.95266 0.93405 0.94529 1.20985 0.97353 0.98656 0.97693 1.20854 0.99278 0.98133 0.93162 1.21041 1.00531 0.95538 1.01273 1.17706 0.98792 0.88129 0.87341 1.91484 1.94223 1.62773 1.63534 1.21544 1.01165 1.00853 0.92161 1.22345 1.00240 0.94779 0.96407 1.22470 0.96304 1.00536 0.96527 1.22397 0.96502 0.97444 0.99763 1.22466 0.97834 0.98886 0.95663 0.94562 0.90013 0.93007 0.92426 0.85452 0.85407 0.85324 0.83501 0.91764 0.89450 0.91102 0.91925 0.91804 0.91926 0.90478 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 6.09 59.85 0.36 2.72 16 2 N -0.44 -11.11 2.09 -122.19 -0.26 -11.37 16 3 C -0.30 -8.40 9.52 -14.93 -0.14 -8.54 16 4 H 0.10 3.02 7.23 -52.49 -0.38 2.64 16 5 C 0.03 0.76 5.37 -17.47 -0.09 0.66 16 6 N -0.88 -23.30 9.73 55.50 0.54 -22.76 16 7 Si 0.93 21.02 29.56 -169.99 -5.03 15.99 16 8 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.45 10.70 4.84 -10.99 -0.05 10.65 16 12 O -0.59 -15.99 14.98 5.54 0.08 -15.91 16 13 C -0.03 -0.63 0.47 -155.69 -0.07 -0.70 16 14 C -0.03 -0.46 3.17 -104.63 -0.33 -0.79 16 15 C -0.13 -1.75 8.10 -39.58 -0.32 -2.07 16 16 C -0.10 -1.18 10.04 -39.59 -0.40 -1.57 16 17 C -0.16 -2.28 10.03 -39.51 -0.40 -2.68 16 18 C 0.10 1.72 7.30 -39.42 -0.29 1.44 16 19 F -0.14 -2.59 17.27 2.25 0.04 -2.56 16 20 C -0.14 -2.66 7.67 -39.51 -0.30 -2.96 16 21 C -0.10 -1.64 5.67 -25.03 -0.14 -1.78 16 22 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16 23 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 24 C -0.11 -1.78 4.00 -25.62 -0.10 -1.88 16 25 H 0.04 0.71 3.20 -51.93 -0.17 0.55 16 26 H 0.08 2.00 6.63 -51.92 -0.34 1.65 16 27 H 0.05 1.27 7.56 -51.93 -0.39 0.87 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.13 1.44 7.74 -52.48 -0.41 1.03 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.15 3.35 5.92 -52.49 -0.31 3.04 16 33 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 34 H 0.09 1.66 6.80 -51.93 -0.35 1.31 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.43 6.77 -51.93 -0.35 1.08 16 40 H 0.07 1.03 6.32 -51.93 -0.33 0.71 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -29.85 313.52 -7.60 -37.45 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.09 Total: 5.65 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.62 Total: -11.22 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.28 Total: -34.13 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.85 -7.60 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263828511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.731 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds