Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 120.00251 * 2 1 4 4 H 1.07998 * 120.00645 * 188.75884 * 3 2 1 5 5 C 1.38949 * 119.99493 * 8.75814 * 3 2 1 6 6 N 1.31408 * 120.00669 * 8.80540 * 5 3 2 7 7 Si 1.86811 * 119.99743 * 188.79585 * 5 3 2 8 8 H 1.48490 * 109.46897 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46741 * 120.00403 * 7 5 3 10 10 H 1.48501 * 109.47035 * 240.00259 * 7 5 3 11 11 C 1.34770 * 120.00207 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00650 * 184.19197 * 11 2 1 13 13 C 1.50703 * 119.99856 * 4.18628 * 11 2 1 14 14 C 1.50697 * 110.01625 * 61.67286 * 13 11 2 15 15 C 1.38265 * 119.99119 * 187.69995 * 14 13 11 16 16 C 1.38227 * 120.05451 * 179.76486 * 15 14 13 17 17 C 1.38217 * 120.02431 * 0.51032 * 16 15 14 18 18 C 1.38440 * 119.97548 * 359.74655 * 17 16 15 19 19 F 1.35089 * 120.02868 * 179.97438 * 18 17 16 20 20 C 1.38180 * 119.98706 * 7.97674 * 14 13 11 21 21 C 1.54274 * 110.03320 * 183.06111 * 13 11 2 22 22 C 1.54965 * 104.15581 * 95.75472 * 21 13 11 23 23 C 1.54889 * 102.77569 * 37.89137 * 22 21 13 24 24 C 1.53871 * 110.03419 * 300.28175 * 13 11 2 25 25 H 1.09001 * 109.47285 * 174.65631 * 1 2 3 26 26 H 1.09010 * 109.46840 * 294.65281 * 1 2 3 27 27 H 1.08998 * 109.47166 * 54.65051 * 1 2 3 28 28 H 0.96995 * 120.00251 * 179.97438 * 6 5 3 29 29 H 1.08006 * 119.97037 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.98386 * 180.25666 * 16 15 14 31 31 H 1.07996 * 120.01230 * 179.76697 * 17 16 15 32 32 H 1.07998 * 120.01333 * 359.95674 * 20 14 13 33 33 H 1.09006 * 110.48410 * 214.40183 * 21 13 11 34 34 H 1.09000 * 110.48664 * 337.04762 * 21 13 11 35 35 H 1.08994 * 110.71974 * 279.57234 * 22 21 13 36 36 H 1.09003 * 110.92122 * 156.29452 * 22 21 13 37 37 H 1.09001 * 110.48379 * 203.39860 * 23 22 21 38 38 H 1.09001 * 110.60127 * 80.81898 * 23 22 21 39 39 H 1.09000 * 110.03228 * 359.94724 * 24 13 11 40 40 H 1.08998 * 110.03371 * 121.33417 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2211 1.1928 -0.1424 5 6 1.4679 2.3836 0.1832 6 7 0.1998 2.3705 0.5277 7 14 2.3529 4.0107 -0.0598 8 1 3.7643 3.7539 -0.4431 9 1 1.6811 4.7837 -1.1352 10 1 2.3165 4.7877 1.2051 11 6 2.1389 -1.1671 -0.0005 12 8 3.3494 -1.1687 0.0763 13 6 1.3884 -2.4705 -0.0964 14 6 0.6292 -2.5341 -1.3966 15 6 -0.2571 -3.5695 -1.6295 16 6 -0.9577 -3.6265 -2.8196 17 6 -0.7652 -2.6541 -3.7828 18 6 0.1259 -1.6198 -3.5530 19 9 0.3154 -0.6691 -4.4939 20 6 0.8234 -1.5609 -2.3581 21 6 2.3721 -3.6550 -0.0003 22 6 2.3354 -4.0577 1.4957 23 6 0.8426 -3.8712 1.8641 24 6 0.4165 -2.6075 1.0887 25 1 -0.3634 -1.0232 -0.0957 26 1 -0.3633 0.4287 0.9341 27 1 -0.3633 0.5946 -0.8382 28 1 -0.2766 3.2056 0.6559 29 1 -0.4052 -4.3320 -0.8790 30 1 -1.6529 -4.4335 -2.9986 31 1 -1.3099 -2.7009 -4.7141 32 1 1.5186 -0.7543 -2.1776 33 1 2.0359 -4.4818 -0.6262 34 1 3.3758 -3.3416 -0.2873 35 1 2.9655 -3.3951 2.0889 36 1 2.6387 -5.0965 1.6267 37 1 0.7310 -3.7160 2.9372 38 1 0.2574 -4.7323 1.5413 39 1 0.4883 -1.7318 1.7336 40 1 -0.6043 -2.7192 0.7234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263828511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = -58.767953 kcal Electronic energy + Delta-G solvation = -24630.475128 eV Core-core repulsion = 21131.310492 eV Total energy + Delta-G solvation = -3499.164635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.90500 -42.05099 -39.40257 -37.93790 -36.71606 -33.90417 -32.62180 -31.42356 -29.73855 -29.12758 -27.97806 -26.42763 -23.91560 -23.54761 -22.27606 -21.42294 -19.92755 -19.02341 -18.74445 -17.62573 -17.15933 -17.09836 -16.61969 -16.52630 -16.17400 -15.96149 -15.59487 -15.37180 -14.68040 -14.41746 -14.21452 -14.00231 -13.87638 -13.46558 -13.42242 -12.94518 -12.88567 -12.75781 -12.46914 -12.37819 -12.24383 -12.21916 -12.09199 -11.85060 -11.68202 -11.61800 -11.39549 -11.09972 -10.26533 -9.86113 -9.83587 -9.56025 -8.28142 -5.96854 0.21008 0.29251 1.28413 1.33046 1.46989 1.96968 2.20077 2.64266 2.98503 3.05076 3.28567 3.58923 3.68785 3.78297 3.97738 4.05224 4.16285 4.27408 4.39079 4.48021 4.52815 4.59346 4.67427 4.69391 4.84417 4.92034 5.02513 5.09712 5.12008 5.16844 5.22438 5.24169 5.30015 5.37906 5.39478 5.44433 5.46940 5.55071 5.58780 5.98725 6.01856 6.44186 7.12349 7.46563 8.00218 8.62541 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.007631 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.525591 B = 3668.228064 C = 4947.998165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.455 5.455 3 C -0.343 4.343 4 H 0.071 0.929 5 C -0.004 4.004 6 N -0.894 5.894 7 Si 0.987 3.013 8 H -0.277 1.277 9 H -0.269 1.269 10 H -0.267 1.267 11 C 0.443 3.557 12 O -0.637 6.637 13 C -0.031 4.031 14 C -0.043 4.043 15 C -0.113 4.113 16 C -0.074 4.074 17 C -0.152 4.152 18 C 0.072 3.928 19 F -0.159 7.159 20 C -0.172 4.172 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.026 0.974 28 H 0.271 0.729 29 H 0.168 0.832 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -15.536 -2.811 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.172 5.172 3 C -0.471 4.471 4 H 0.089 0.911 5 C -0.205 4.205 6 N -0.534 5.534 7 Si 0.811 3.189 8 H -0.202 1.202 9 H -0.194 1.194 10 H -0.192 1.192 11 C 0.233 3.767 12 O -0.525 6.525 13 C -0.034 4.034 14 C -0.044 4.044 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.171 4.171 18 C 0.053 3.947 19 F -0.138 7.138 20 C -0.192 4.192 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.148 4.148 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.186 0.814 30 H 0.200 0.800 31 H 0.177 0.823 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.060 0.940 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.905 -15.295 -2.762 17.437 hybrid contribution 1.077 2.313 -0.337 2.573 sum -6.828 -12.983 -3.099 14.992 Atomic orbital electron populations 1.21804 0.79181 0.98660 1.01900 1.43816 1.06785 1.04520 1.62054 1.19723 0.93389 0.84386 1.49575 0.91061 1.26017 0.96781 1.02184 0.95525 1.70186 1.09533 1.28276 1.45391 0.84969 0.78021 0.77428 0.78514 1.20194 1.19403 1.19247 1.20698 0.87662 0.85970 0.82357 1.90442 1.16428 1.87663 1.58008 1.20309 0.95815 0.93142 0.94112 1.19530 0.96883 0.94692 0.93261 1.21384 0.95126 0.97444 0.99124 1.21460 0.98333 0.98035 0.91291 1.21458 0.98680 0.93975 1.02955 1.18045 1.00484 0.89481 0.86736 1.91430 1.94562 1.63805 1.63959 1.21257 1.02244 1.01064 0.94606 1.22380 0.97701 0.94933 0.98647 1.22474 0.97232 1.01705 0.94288 1.22404 0.95400 0.97059 0.99932 1.22486 0.98555 0.99408 0.94463 0.91081 0.91855 0.95533 0.91838 0.81425 0.80047 0.82305 0.89017 0.88133 0.93423 0.94639 0.88365 0.90950 0.87506 0.94011 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.11 6.09 127.77 0.78 6.89 16 2 N -0.45 -24.74 2.09 -658.89 -1.38 -26.12 16 3 C -0.34 -20.63 9.52 84.04 0.80 -19.83 16 4 H 0.07 4.62 7.23 -2.91 -0.02 4.60 16 5 C 0.00 -0.23 5.37 84.93 0.46 0.23 16 6 N -0.89 -48.92 9.73 21.66 0.21 -48.71 16 7 Si 0.99 44.98 29.56 68.60 2.03 47.01 16 8 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 C 0.44 22.73 4.84 87.66 0.42 23.16 16 12 O -0.64 -37.96 14.98 -3.08 -0.05 -38.01 16 13 C -0.03 -1.11 0.47 -52.95 -0.02 -1.14 16 14 C -0.04 -1.42 3.17 -19.87 -0.06 -1.48 16 15 C -0.11 -2.46 8.10 22.27 0.18 -2.28 16 16 C -0.07 -1.33 10.04 22.26 0.22 -1.11 16 17 C -0.15 -3.64 10.03 22.31 0.22 -3.41 16 18 C 0.07 2.49 7.30 22.38 0.16 2.65 16 19 F -0.16 -6.09 17.27 44.97 0.78 -5.32 16 20 C -0.17 -6.91 7.67 22.32 0.17 -6.74 16 21 C -0.10 -3.16 5.67 31.70 0.18 -2.98 16 22 C -0.12 -3.21 6.91 31.91 0.22 -2.99 16 23 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 24 C -0.11 -3.36 4.00 31.32 0.13 -3.23 16 25 H 0.07 2.84 3.20 -2.39 -0.01 2.83 16 26 H 0.06 3.23 6.63 -2.38 -0.02 3.22 16 27 H 0.03 1.36 7.56 -2.39 -0.02 1.35 16 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.17 2.37 7.74 -2.91 -0.02 2.35 16 30 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.09 4.66 5.92 -2.91 -0.02 4.65 16 33 H 0.10 2.45 7.39 -2.38 -0.02 2.43 16 34 H 0.05 1.90 6.80 -2.39 -0.02 1.88 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.55 6.77 -2.39 -0.02 1.54 16 40 H 0.10 2.42 6.32 -2.39 -0.02 2.40 16 Total: -1.00 -75.68 313.52 6.73 -68.95 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.06 Total: 16.69 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.07 Total: -14.50 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.17 Total: -74.83 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.05 Total: -38.01 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.68 6.73 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263828511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.182 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds