Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37099 * 119.99664 * 2 1 4 4 H 1.07998 * 119.99821 * 173.67032 * 3 2 1 5 5 C 1.38948 * 120.00043 * 353.65902 * 3 2 1 6 6 N 1.31410 * 120.00346 * 5.26220 * 5 3 2 7 7 Si 1.86803 * 119.99982 * 185.25270 * 5 3 2 8 8 H 1.48499 * 109.46769 * 60.00278 * 7 5 3 9 9 H 1.48498 * 109.47034 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47370 * 300.00755 * 7 5 3 11 11 C 1.34773 * 120.00099 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00001 * 4.68307 * 11 2 1 13 13 C 1.50696 * 120.00047 * 184.39894 * 11 2 1 14 14 C 1.50704 * 110.01560 * 62.92036 * 13 11 2 15 15 C 1.38219 * 120.01136 * 4.78989 * 14 13 11 16 16 C 1.38228 * 120.02521 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.04700 * 359.97438 * 16 15 14 18 18 C 1.38179 * 120.03261 * 0.04361 * 17 16 15 19 19 C 1.38439 * 120.01117 * 184.50891 * 14 13 11 20 20 F 1.35095 * 120.02890 * 0.02562 * 19 14 13 21 21 C 1.53876 * 110.03535 * 301.53398 * 13 11 2 22 22 C 1.54378 * 106.54378 * 240.72942 * 21 13 11 23 23 C 1.54893 * 104.21461 * 23.57097 * 22 21 13 24 24 C 1.54269 * 110.03555 * 184.31211 * 13 11 2 25 25 H 1.09006 * 109.46863 * 184.45034 * 1 2 3 26 26 H 1.09002 * 109.47353 * 304.44549 * 1 2 3 27 27 H 1.08997 * 109.47714 * 64.44756 * 1 2 3 28 28 H 0.96999 * 120.00403 * 180.02562 * 6 5 3 29 29 H 1.08004 * 119.98674 * 359.95076 * 15 14 13 30 30 H 1.07997 * 119.97337 * 180.02562 * 16 15 14 31 31 H 1.08003 * 119.98453 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.01065 * 179.97438 * 18 17 16 33 33 H 1.09005 * 110.02966 * 359.97438 * 21 13 11 34 34 H 1.08996 * 110.03417 * 121.42744 * 21 13 11 35 35 H 1.09004 * 110.45955 * 264.89440 * 22 21 13 36 36 H 1.08999 * 110.49427 * 142.26202 * 22 21 13 37 37 H 1.09004 * 110.75082 * 203.76416 * 23 22 21 38 38 H 1.08999 * 110.75666 * 80.39671 * 23 22 21 39 39 H 1.08994 * 110.48675 * 214.35464 * 24 13 11 40 40 H 1.09001 * 110.48521 * 336.86692 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2255 1.1902 0.1031 5 6 1.4620 2.3870 -0.1329 6 7 0.1481 2.3917 -0.1546 7 14 2.4042 3.9932 -0.2805 8 1 3.2779 3.9460 -1.4804 9 1 1.4452 5.1196 -0.4097 10 1 3.2388 4.1908 0.9319 11 6 2.1389 -1.1672 0.0005 12 8 1.5355 -2.2159 -0.0848 13 6 3.6425 -1.1690 0.1006 14 6 4.0726 -0.5733 1.4164 15 6 3.1245 -0.2174 2.3570 16 6 3.5187 0.3286 3.5642 17 6 4.8616 0.5187 3.8324 18 6 5.8113 0.1640 2.8934 19 6 5.4178 -0.3878 1.6858 20 9 6.3457 -0.7401 0.7692 21 6 4.2494 -0.3674 -1.0643 22 6 5.1335 -1.3508 -1.8610 23 6 4.5487 -2.7453 -1.5257 24 6 4.1790 -2.6097 -0.0277 25 1 -0.3633 -1.0246 0.0797 26 1 -0.3634 0.5813 0.8475 27 1 -0.3634 0.4432 -0.9271 28 1 -0.3325 3.2291 -0.2478 29 1 2.0751 -0.3655 2.1485 30 1 2.7772 0.6060 4.2987 31 1 5.1685 0.9450 4.7761 32 1 6.8602 0.3131 3.1031 33 1 3.4563 0.0226 -1.7023 34 1 4.8557 0.4518 -0.6779 35 1 6.1705 -1.2828 -1.5324 36 1 5.0572 -1.1522 -2.9300 37 1 5.2985 -3.5233 -1.6695 38 1 3.6615 -2.9467 -2.1260 39 1 5.0619 -2.7451 0.5969 40 1 3.4069 -3.3298 0.2434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263842434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = -39.865928 kcal Electronic energy + Delta-G solvation = -25192.557204 eV Core-core repulsion = 21694.212222 eV Total energy + Delta-G solvation = -3498.344982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.49543 -40.15509 -37.87722 -36.40791 -34.83362 -31.85154 -31.17110 -30.04789 -28.27396 -27.61334 -26.05557 -24.52212 -22.32340 -22.12919 -20.45310 -20.07595 -18.67419 -17.35334 -16.96415 -16.26474 -15.67959 -15.23759 -15.11674 -14.59794 -14.35048 -14.20254 -14.00050 -13.89322 -13.20557 -12.85351 -12.52261 -12.48974 -12.10291 -11.89902 -11.60392 -11.52773 -11.09598 -11.01404 -10.92015 -10.82152 -10.70322 -10.52432 -10.46584 -10.33931 -10.11618 -10.04242 -9.99518 -9.09238 -8.43925 -8.33617 -8.14088 -7.89850 -6.31252 -3.89877 1.59085 1.68878 3.08565 3.16447 3.18234 3.80246 4.03455 4.03866 4.62987 4.75330 4.98441 5.10845 5.15019 5.23219 5.28331 5.40313 5.57381 5.68763 5.81617 6.00087 6.03412 6.14889 6.18988 6.22153 6.28278 6.40612 6.43531 6.49394 6.53227 6.60152 6.75588 6.81191 6.83661 6.95736 6.97472 7.00078 7.23220 7.34633 7.41400 7.46742 7.72018 8.37811 9.04228 9.49371 9.88314 10.61450 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.009055 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.274090 B = 3091.331258 C = 3747.979219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.441 5.441 3 C -0.325 4.325 4 H 0.107 0.893 5 C 0.037 3.963 6 N -0.874 5.874 7 Si 0.915 3.085 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.271 1.271 11 C 0.459 3.541 12 O -0.607 6.607 13 C -0.020 4.020 14 C -0.083 4.083 15 C -0.055 4.055 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.166 4.166 19 C 0.096 3.904 20 F -0.138 7.138 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.103 4.103 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.576 -2.060 3.728 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.158 5.158 3 C -0.453 4.453 4 H 0.125 0.875 5 C -0.167 4.167 6 N -0.514 5.514 7 Si 0.742 3.258 8 H -0.197 1.197 9 H -0.207 1.207 10 H -0.197 1.197 11 C 0.247 3.753 12 O -0.495 6.495 13 C -0.023 4.023 14 C -0.085 4.085 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.185 4.185 19 C 0.077 3.923 20 F -0.117 7.117 21 C -0.139 4.139 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.101 -2.378 3.628 9.189 hybrid contribution 0.539 1.255 -0.181 1.378 sum 8.640 -1.123 3.446 9.370 Atomic orbital electron populations 1.21572 0.79667 0.97389 1.03467 1.43744 1.06155 1.04701 1.61229 1.19938 0.93291 0.82713 1.49329 0.87526 1.25241 0.95577 0.99486 0.96370 1.70212 1.05869 1.27260 1.48046 0.86151 0.79211 0.81174 0.79306 1.19686 1.20744 1.19659 1.19496 0.88205 0.83793 0.83758 1.90500 1.69439 1.31552 1.57977 1.20022 0.94546 0.95823 0.91933 1.19740 0.91237 1.00805 0.96701 1.21269 1.00351 0.94095 0.91604 1.21142 0.95789 1.00569 0.97556 1.20867 0.92792 0.99725 0.98713 1.20945 1.00400 1.03631 0.93548 1.17455 0.85621 1.01425 0.87808 1.91438 1.64914 1.89859 1.65466 1.22314 0.98873 0.96970 0.95714 1.22455 0.99296 0.95243 0.99302 1.22408 1.00050 0.96594 0.96457 1.22328 1.00250 0.94961 0.96481 0.94854 0.91348 0.91984 0.92241 0.84380 0.85888 0.85842 0.85526 0.89830 0.91774 0.91702 0.92233 0.92213 0.91410 0.92088 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.97 8.86 59.85 0.53 3.50 16 2 N -0.44 -10.79 2.09 -122.19 -0.26 -11.05 16 3 C -0.33 -7.88 6.36 -14.93 -0.10 -7.97 16 4 H 0.11 2.52 3.88 -52.49 -0.20 2.32 16 5 C 0.04 0.91 5.46 -17.47 -0.10 0.81 16 6 N -0.87 -22.04 9.45 55.50 0.52 -21.51 16 7 Si 0.92 19.45 29.56 -169.99 -5.02 14.42 16 8 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 C 0.46 10.91 4.94 -10.99 -0.05 10.85 16 12 O -0.61 -15.81 14.72 5.54 0.08 -15.73 16 13 C -0.02 -0.41 0.38 -155.69 -0.06 -0.47 16 14 C -0.08 -1.61 3.37 -104.55 -0.35 -1.97 16 15 C -0.06 -1.07 7.68 -39.59 -0.30 -1.37 16 16 C -0.13 -2.16 10.04 -39.58 -0.40 -2.55 16 17 C -0.10 -1.48 10.04 -39.59 -0.40 -1.87 16 18 C -0.17 -2.50 10.03 -39.51 -0.40 -2.90 16 19 C 0.10 1.67 6.18 -39.42 -0.24 1.43 16 20 F -0.14 -2.34 13.21 2.25 0.03 -2.32 16 21 C -0.10 -1.96 3.62 -25.55 -0.09 -2.05 16 22 C -0.13 -2.06 6.47 -25.01 -0.16 -2.22 16 23 C -0.12 -1.96 6.91 -24.74 -0.17 -2.13 16 24 C -0.10 -1.90 5.40 -25.07 -0.14 -2.04 16 25 H 0.03 0.80 6.94 -51.93 -0.36 0.44 16 26 H 0.07 1.69 7.00 -51.93 -0.36 1.33 16 27 H 0.06 1.57 7.10 -51.93 -0.37 1.21 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.14 3.01 5.75 -52.48 -0.30 2.71 16 30 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.08 1.80 6.65 -51.93 -0.35 1.45 16 34 H 0.06 1.24 6.16 -51.93 -0.32 0.92 16 35 H 0.06 1.00 7.12 -51.93 -0.37 0.63 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.06 6.70 -51.93 -0.35 0.71 16 40 H 0.08 1.70 6.79 -51.93 -0.35 1.34 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -27.05 307.07 -7.45 -34.50 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.00 Total: 8.01 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.43 Total: -10.94 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.27 Total: -32.56 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.03 Total: -2.32 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.05 -7.45 -34.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263842434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.369 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds