Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37099 * 119.99664 * 2 1 4 4 H 1.07998 * 119.99821 * 173.67032 * 3 2 1 5 5 C 1.38948 * 120.00043 * 353.65902 * 3 2 1 6 6 N 1.31410 * 120.00346 * 5.26220 * 5 3 2 7 7 Si 1.86803 * 119.99982 * 185.25270 * 5 3 2 8 8 H 1.48499 * 109.46769 * 60.00278 * 7 5 3 9 9 H 1.48498 * 109.47034 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47370 * 300.00755 * 7 5 3 11 11 C 1.34773 * 120.00099 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00001 * 4.68307 * 11 2 1 13 13 C 1.50696 * 120.00047 * 184.39894 * 11 2 1 14 14 C 1.50704 * 110.01560 * 62.92036 * 13 11 2 15 15 C 1.38219 * 120.01136 * 4.78989 * 14 13 11 16 16 C 1.38228 * 120.02521 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.04700 * 359.97438 * 16 15 14 18 18 C 1.38179 * 120.03261 * 0.04361 * 17 16 15 19 19 C 1.38439 * 120.01117 * 184.50891 * 14 13 11 20 20 F 1.35095 * 120.02890 * 0.02562 * 19 14 13 21 21 C 1.53876 * 110.03535 * 301.53398 * 13 11 2 22 22 C 1.54378 * 106.54378 * 240.72942 * 21 13 11 23 23 C 1.54893 * 104.21461 * 23.57097 * 22 21 13 24 24 C 1.54269 * 110.03555 * 184.31211 * 13 11 2 25 25 H 1.09006 * 109.46863 * 184.45034 * 1 2 3 26 26 H 1.09002 * 109.47353 * 304.44549 * 1 2 3 27 27 H 1.08997 * 109.47714 * 64.44756 * 1 2 3 28 28 H 0.96999 * 120.00403 * 180.02562 * 6 5 3 29 29 H 1.08004 * 119.98674 * 359.95076 * 15 14 13 30 30 H 1.07997 * 119.97337 * 180.02562 * 16 15 14 31 31 H 1.08003 * 119.98453 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.01065 * 179.97438 * 18 17 16 33 33 H 1.09005 * 110.02966 * 359.97438 * 21 13 11 34 34 H 1.08996 * 110.03417 * 121.42744 * 21 13 11 35 35 H 1.09004 * 110.45955 * 264.89440 * 22 21 13 36 36 H 1.08999 * 110.49427 * 142.26202 * 22 21 13 37 37 H 1.09004 * 110.75082 * 203.76416 * 23 22 21 38 38 H 1.08999 * 110.75666 * 80.39671 * 23 22 21 39 39 H 1.08994 * 110.48675 * 214.35464 * 24 13 11 40 40 H 1.09001 * 110.48521 * 336.86692 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2255 1.1902 0.1031 5 6 1.4620 2.3870 -0.1329 6 7 0.1481 2.3917 -0.1546 7 14 2.4042 3.9932 -0.2805 8 1 3.2779 3.9460 -1.4804 9 1 1.4452 5.1196 -0.4097 10 1 3.2388 4.1908 0.9319 11 6 2.1389 -1.1672 0.0005 12 8 1.5355 -2.2159 -0.0848 13 6 3.6425 -1.1690 0.1006 14 6 4.0726 -0.5733 1.4164 15 6 3.1245 -0.2174 2.3570 16 6 3.5187 0.3286 3.5642 17 6 4.8616 0.5187 3.8324 18 6 5.8113 0.1640 2.8934 19 6 5.4178 -0.3878 1.6858 20 9 6.3457 -0.7401 0.7692 21 6 4.2494 -0.3674 -1.0643 22 6 5.1335 -1.3508 -1.8610 23 6 4.5487 -2.7453 -1.5257 24 6 4.1790 -2.6097 -0.0277 25 1 -0.3633 -1.0246 0.0797 26 1 -0.3634 0.5813 0.8475 27 1 -0.3634 0.4432 -0.9271 28 1 -0.3325 3.2291 -0.2478 29 1 2.0751 -0.3655 2.1485 30 1 2.7772 0.6060 4.2987 31 1 5.1685 0.9450 4.7761 32 1 6.8602 0.3131 3.1031 33 1 3.4563 0.0226 -1.7023 34 1 4.8557 0.4518 -0.6779 35 1 6.1705 -1.2828 -1.5324 36 1 5.0572 -1.1522 -2.9300 37 1 5.2985 -3.5233 -1.6695 38 1 3.6615 -2.9467 -2.1260 39 1 5.0619 -2.7451 0.5969 40 1 3.4069 -3.3298 0.2434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263842434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = -52.377707 kcal Electronic energy + Delta-G solvation = -25193.099755 eV Core-core repulsion = 21694.212222 eV Total energy + Delta-G solvation = -3498.887533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.78949 -41.79047 -39.33807 -37.99809 -36.76822 -33.54366 -32.75998 -31.33193 -29.81830 -29.11389 -27.87543 -26.38382 -23.71329 -23.44665 -22.05889 -21.53987 -20.45404 -18.86219 -18.55403 -17.84207 -17.08488 -16.74448 -16.49512 -16.19220 -16.09466 -15.83211 -15.59255 -15.35887 -14.66551 -14.45456 -14.06120 -13.91338 -13.63019 -13.43166 -13.36601 -13.11507 -12.81341 -12.74132 -12.45969 -12.35987 -12.20429 -12.13409 -12.07167 -11.87971 -11.66327 -11.54979 -11.41284 -10.98138 -10.25454 -9.89067 -9.70105 -9.45479 -8.20138 -5.83499 0.29845 0.40183 1.38877 1.42938 1.51103 1.96547 2.26006 2.74342 2.90472 3.18111 3.42053 3.61099 3.72547 3.80696 3.97461 4.15132 4.22428 4.37610 4.49287 4.52305 4.53993 4.61266 4.76618 4.82830 4.84456 4.98653 5.02666 5.07554 5.16220 5.18392 5.21745 5.24905 5.31228 5.39113 5.43212 5.50202 5.52175 5.53882 5.65046 5.78509 6.07055 6.45497 7.13054 7.58655 7.97570 8.74078 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.009055 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.274090 B = 3091.331258 C = 3747.979219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.450 5.450 3 C -0.327 4.327 4 H 0.114 0.886 5 C -0.006 4.006 6 N -0.902 5.902 7 Si 0.974 3.026 8 H -0.268 1.268 9 H -0.282 1.282 10 H -0.263 1.263 11 C 0.454 3.546 12 O -0.640 6.640 13 C -0.019 4.019 14 C -0.105 4.105 15 C -0.084 4.084 16 C -0.135 4.135 17 C -0.089 4.089 18 C -0.155 4.155 19 C 0.088 3.912 20 F -0.136 7.136 21 C -0.098 4.098 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.100 4.100 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 -1.061 4.786 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.167 5.167 3 C -0.454 4.454 4 H 0.132 0.868 5 C -0.207 4.207 6 N -0.542 5.542 7 Si 0.797 3.203 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.188 1.188 11 C 0.243 3.757 12 O -0.530 6.530 13 C -0.022 4.022 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.174 4.174 19 C 0.068 3.932 20 F -0.115 7.115 21 C -0.136 4.136 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.138 4.138 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.157 0.843 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.479 -1.380 4.686 12.475 hybrid contribution -0.547 0.898 -0.436 1.138 sum 10.932 -0.482 4.250 11.739 Atomic orbital electron populations 1.21313 0.80461 0.96527 1.02279 1.43906 1.05971 1.05432 1.61363 1.20143 0.93593 0.82593 1.49053 0.86848 1.26015 0.96349 1.02202 0.96136 1.70315 1.07032 1.27871 1.48959 0.85253 0.78069 0.77445 0.79488 1.19258 1.20714 1.18794 1.20206 0.90030 0.82961 0.82464 1.90460 1.70714 1.32566 1.59214 1.20004 0.91542 0.97263 0.93396 1.19675 0.92496 1.02285 0.96143 1.21085 0.98709 0.96778 0.93675 1.21395 0.97648 0.99736 0.96552 1.21326 0.91374 0.97928 1.00043 1.21392 1.02415 1.01466 0.92096 1.17553 0.84702 1.02033 0.88876 1.91433 1.64494 1.89920 1.65623 1.22243 0.98430 0.97666 0.95273 1.22431 0.99422 0.93784 0.99731 1.22405 1.00221 0.97913 0.94583 1.22312 0.99942 0.93301 0.98232 0.95424 0.92133 0.93370 0.92286 0.88072 0.84299 0.81524 0.81954 0.92752 0.91655 0.89819 0.90815 0.89029 0.93267 0.90487 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.11 8.86 127.77 1.13 8.24 16 2 N -0.45 -23.06 2.09 -658.89 -1.38 -24.43 16 3 C -0.33 -16.17 6.36 84.04 0.53 -15.64 16 4 H 0.11 5.40 3.88 -2.91 -0.01 5.39 16 5 C -0.01 -0.31 5.46 84.93 0.46 0.15 16 6 N -0.90 -46.65 9.45 21.66 0.20 -46.44 16 7 Si 0.97 39.49 29.56 68.60 2.03 41.51 16 8 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 9 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 11 C 0.45 22.54 4.94 87.66 0.43 22.97 16 12 O -0.64 -35.16 14.72 -3.08 -0.05 -35.21 16 13 C -0.02 -0.78 0.38 -52.95 -0.02 -0.80 16 14 C -0.10 -3.99 3.37 -19.82 -0.07 -4.06 16 15 C -0.08 -3.29 7.68 22.26 0.17 -3.12 16 16 C -0.14 -4.16 10.04 22.27 0.22 -3.93 16 17 C -0.09 -2.17 10.04 22.26 0.22 -1.95 16 18 C -0.16 -3.98 10.03 22.31 0.22 -3.75 16 19 C 0.09 2.82 6.18 22.38 0.14 2.96 16 20 F -0.14 -4.19 13.21 44.97 0.59 -3.59 16 21 C -0.10 -3.77 3.62 31.36 0.11 -3.66 16 22 C -0.12 -3.59 6.47 31.71 0.21 -3.39 16 23 C -0.11 -3.65 6.91 31.89 0.22 -3.43 16 24 C -0.10 -3.70 5.40 31.67 0.17 -3.53 16 25 H 0.03 1.41 6.94 -2.38 -0.02 1.39 16 26 H 0.06 3.17 7.00 -2.39 -0.02 3.16 16 27 H 0.05 2.58 7.10 -2.39 -0.02 2.56 16 28 H 0.27 13.21 8.31 -92.71 -0.77 12.43 16 29 H 0.10 4.67 5.75 -2.91 -0.02 4.65 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.05 2.38 6.65 -2.38 -0.02 2.36 16 34 H 0.06 2.45 6.16 -2.39 -0.01 2.44 16 35 H 0.08 2.30 7.12 -2.39 -0.02 2.28 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.56 6.70 -2.39 -0.02 2.54 16 40 H 0.06 2.50 6.79 -2.39 -0.02 2.48 16 Total: -1.00 -60.71 307.07 6.64 -54.08 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.06 Total: 27.02 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.17 Total: -12.93 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.17 Total: -70.88 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.05 Total: -35.21 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.59 Total: -3.59 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Total: -60.71 6.64 -54.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263842434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.699 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds