Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99861 * 2 1 4 4 C 1.52999 * 109.46874 * 293.94933 * 3 2 1 5 5 C 1.50699 * 109.47228 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99706 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00011 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99667 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47246 * 89.99842 * 9 7 5 11 11 H 1.48510 * 109.46950 * 209.99471 * 9 7 5 12 12 H 1.48500 * 109.47291 * 329.99424 * 9 7 5 13 13 C 1.46904 * 110.99656 * 123.94926 * 2 1 3 14 14 C 1.50696 * 109.47078 * 66.04978 * 13 2 1 15 15 N 1.30498 * 125.65039 * 270.02096 * 14 13 2 16 16 C 1.34129 * 109.25671 * 179.73373 * 15 14 13 17 17 C 1.34666 * 108.02165 * 0.40230 * 16 15 14 18 18 N 1.35047 * 125.65399 * 89.99634 * 14 13 2 19 19 C 1.46507 * 126.39328 * 0.02641 * 18 14 13 20 20 C 1.52992 * 109.47505 * 85.01935 * 19 18 14 21 21 F 1.39899 * 109.47348 * 59.99730 * 20 19 18 22 22 F 1.39893 * 109.47176 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.47280 * 300.00029 * 20 19 18 24 24 H 1.08994 * 109.47215 * 296.04870 * 1 2 3 25 25 H 1.08998 * 109.46999 * 56.05502 * 1 2 3 26 26 H 1.09003 * 109.46815 * 176.04838 * 1 2 3 27 27 H 1.08993 * 109.47151 * 53.94843 * 3 2 1 28 28 H 1.08993 * 109.46886 * 173.95402 * 3 2 1 29 29 H 1.09005 * 109.47378 * 300.00236 * 4 3 2 30 30 H 1.09004 * 109.47072 * 59.99774 * 4 3 2 31 31 H 0.96998 * 120.00189 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47142 * 306.04433 * 13 2 1 33 33 H 1.09000 * 109.46729 * 186.04870 * 13 2 1 34 34 H 1.08003 * 125.99108 * 180.25065 * 16 15 14 35 35 H 1.08002 * 126.59556 * 179.87817 * 17 16 15 36 36 H 1.09000 * 109.46583 * 205.02344 * 19 18 14 37 37 H 1.09008 * 109.46472 * 325.01713 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1710 3.4645 -1.3181 6 1 2.7190 3.8326 -0.4634 7 6 1.9658 4.2816 -2.4096 8 7 2.4370 5.5094 -2.4096 9 14 1.0186 3.6447 -3.8882 10 1 -0.4272 3.9344 -3.7122 11 1 1.5116 4.3152 -5.1182 12 1 1.2184 2.1782 -4.0099 13 6 1.9954 -0.7659 1.1377 14 6 1.6369 -2.2203 0.9730 15 7 0.5511 -2.7912 1.4180 16 6 0.5653 -4.0901 1.0838 17 6 1.7073 -4.3354 0.4137 18 7 2.3859 -3.1489 0.3401 19 6 3.6827 -2.9276 -0.3047 20 6 4.7962 -3.0345 0.7390 21 9 4.7738 -4.3087 1.3161 22 9 6.0344 -2.8226 0.1233 23 9 4.5986 -2.0692 1.7323 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5738 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5611 1.9274 0.8308 28 1 3.0797 1.3444 0.1082 29 1 2.0659 1.5014 -2.1492 30 1 0.5472 2.0843 -1.4266 31 1 2.2924 6.0844 -3.1773 32 1 1.5611 -0.3871 2.0629 33 1 3.0797 -0.6610 1.1758 34 1 -0.2032 -4.8131 1.3141 35 1 2.0247 -5.2847 0.0081 36 1 3.8366 -3.6796 -1.0786 37 1 3.7001 -1.9347 -0.7543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264099905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -82.551850 kcal Electronic energy + Delta-G solvation = -23933.701935 eV Core-core repulsion = 19911.569174 eV Total energy + Delta-G solvation = -4022.132761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.50551 -48.01726 -47.99101 -42.29265 -37.30172 -34.85439 -33.13521 -31.19556 -29.62673 -29.24230 -27.00509 -25.53296 -24.12002 -22.55499 -21.61786 -20.09880 -19.92281 -18.91979 -18.84868 -18.29302 -16.96027 -16.76754 -15.55422 -15.35358 -14.86236 -14.78836 -14.63462 -14.45899 -14.39176 -14.17356 -14.13510 -14.08671 -13.93505 -13.58283 -13.20066 -12.91786 -12.58726 -12.53290 -12.41793 -11.65331 -11.38844 -11.24891 -10.95289 -10.12971 -9.99130 -9.98079 -9.94334 -9.81420 -9.24232 -8.58617 -8.54991 -7.99595 -6.06733 -4.05221 1.59291 2.13362 2.46263 2.99255 3.30078 3.30574 3.37708 3.42374 3.48040 3.80254 4.20865 4.30647 4.43806 4.53889 4.60298 4.69771 5.12515 5.27546 5.29085 5.52942 5.61731 5.75577 5.90393 6.01951 6.14176 6.27570 6.37727 6.55955 6.68883 6.83992 7.07035 7.20603 7.46192 7.53248 7.80132 7.95645 8.49914 8.97306 9.55564 11.06581 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.004352 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.141385 B = 6432.887843 C = 7209.784390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.070 3.930 4 C -0.006 4.006 5 C -0.522 4.522 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.124 3.876 14 C 0.244 3.756 15 N -0.482 5.482 16 C -0.020 4.020 17 C -0.057 4.057 18 N -0.456 5.456 19 C 0.064 3.936 20 C 0.440 3.560 21 F -0.179 7.179 22 F -0.172 7.172 23 F -0.173 7.173 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.138 0.862 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -22.085 5.120 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.057 4.057 4 C -0.044 4.044 5 C -0.561 4.561 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.006 4.006 14 C -0.019 4.019 15 N -0.201 5.201 16 C -0.167 4.167 17 C -0.188 4.188 18 N -0.141 5.141 19 C -0.062 4.062 20 C 0.385 3.615 21 F -0.160 7.160 22 F -0.153 7.153 23 F -0.154 7.154 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.189 0.811 35 H 0.194 0.806 36 H 0.156 0.844 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.156 -21.752 4.994 22.422 hybrid contribution 0.115 -0.370 -0.430 0.579 sum 2.271 -22.122 4.563 22.702 Atomic orbital electron populations 1.22408 0.87026 1.01863 1.00950 1.62158 1.08825 1.16116 1.39849 1.22193 0.99064 0.84408 1.00002 1.19571 0.96402 0.95707 0.92688 1.21065 1.35741 0.95455 1.03816 0.91045 1.24980 0.95288 0.94642 0.98347 1.69909 1.46218 1.07121 1.30924 0.86785 0.80405 0.79724 0.82438 1.20322 1.21429 1.18840 1.20588 1.00947 0.84223 0.94794 1.23369 0.88695 0.93498 0.96320 1.70348 1.19255 1.07270 1.23180 1.22315 0.98138 0.93639 1.02624 1.22712 0.96416 0.90252 1.09406 1.45004 1.15958 1.09630 1.43530 1.23014 0.79500 1.10271 0.93392 1.20855 0.83638 0.74195 0.82827 1.93218 1.96574 1.40120 1.86089 1.93240 1.44972 1.94619 1.82492 1.93219 1.94802 1.63393 1.63981 0.95530 0.90851 0.91667 0.94946 0.91385 0.95838 0.96857 0.92697 0.91444 0.89010 0.81091 0.80616 0.84435 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.17 60.07 0.55 0.97 16 2 N -0.54 -9.05 4.75 -244.37 -1.16 -10.22 16 3 C 0.07 1.34 4.90 -3.82 -0.02 1.32 16 4 C -0.01 -0.14 3.97 -27.88 -0.11 -0.25 16 5 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 6 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.12 1.78 5.00 -4.98 -0.02 1.76 16 14 C 0.24 3.37 6.19 -155.42 -0.96 2.41 16 15 N -0.48 -7.07 10.51 -10.82 -0.11 -7.18 16 16 C -0.02 -0.24 11.87 -17.81 -0.21 -0.45 16 17 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 18 N -0.46 -5.07 2.64 -113.90 -0.30 -5.37 16 19 C 0.06 0.54 5.69 -4.04 -0.02 0.51 16 20 C 0.44 4.17 3.29 37.15 0.12 4.29 16 21 F -0.18 -1.79 17.24 2.25 0.04 -1.75 16 22 F -0.17 -1.64 17.32 2.25 0.04 -1.60 16 23 F -0.17 -1.98 14.74 2.25 0.03 -1.95 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.28 6.30 -51.93 -0.33 0.95 16 26 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 27 H 0.03 0.64 8.12 -51.93 -0.42 0.21 16 28 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 29 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 30 H 0.01 0.31 5.90 -51.93 -0.31 0.00 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 33 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 34 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.15 1.28 7.91 -51.92 -0.41 0.87 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -32.51 318.56 -6.44 -38.95 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.59 Total: -2.53 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.30 Total: -3.23 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.80 Total: -49.57 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.51 -6.44 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264099905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.600 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds