Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99861 * 2 1 4 4 C 1.52999 * 109.46874 * 293.94933 * 3 2 1 5 5 C 1.50699 * 109.47228 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99706 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00011 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99667 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47246 * 89.99842 * 9 7 5 11 11 H 1.48510 * 109.46950 * 209.99471 * 9 7 5 12 12 H 1.48500 * 109.47291 * 329.99424 * 9 7 5 13 13 C 1.46904 * 110.99656 * 123.94926 * 2 1 3 14 14 C 1.50696 * 109.47078 * 66.04978 * 13 2 1 15 15 N 1.30498 * 125.65039 * 270.02096 * 14 13 2 16 16 C 1.34129 * 109.25671 * 179.73373 * 15 14 13 17 17 C 1.34666 * 108.02165 * 0.40230 * 16 15 14 18 18 N 1.35047 * 125.65399 * 89.99634 * 14 13 2 19 19 C 1.46507 * 126.39328 * 0.02641 * 18 14 13 20 20 C 1.52992 * 109.47505 * 85.01935 * 19 18 14 21 21 F 1.39899 * 109.47348 * 59.99730 * 20 19 18 22 22 F 1.39893 * 109.47176 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.47280 * 300.00029 * 20 19 18 24 24 H 1.08994 * 109.47215 * 296.04870 * 1 2 3 25 25 H 1.08998 * 109.46999 * 56.05502 * 1 2 3 26 26 H 1.09003 * 109.46815 * 176.04838 * 1 2 3 27 27 H 1.08993 * 109.47151 * 53.94843 * 3 2 1 28 28 H 1.08993 * 109.46886 * 173.95402 * 3 2 1 29 29 H 1.09005 * 109.47378 * 300.00236 * 4 3 2 30 30 H 1.09004 * 109.47072 * 59.99774 * 4 3 2 31 31 H 0.96998 * 120.00189 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47142 * 306.04433 * 13 2 1 33 33 H 1.09000 * 109.46729 * 186.04870 * 13 2 1 34 34 H 1.08003 * 125.99108 * 180.25065 * 16 15 14 35 35 H 1.08002 * 126.59556 * 179.87817 * 17 16 15 36 36 H 1.09000 * 109.46583 * 205.02344 * 19 18 14 37 37 H 1.09008 * 109.46472 * 325.01713 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1710 3.4645 -1.3181 6 1 2.7190 3.8326 -0.4634 7 6 1.9658 4.2816 -2.4096 8 7 2.4370 5.5094 -2.4096 9 14 1.0186 3.6447 -3.8882 10 1 -0.4272 3.9344 -3.7122 11 1 1.5116 4.3152 -5.1182 12 1 1.2184 2.1782 -4.0099 13 6 1.9954 -0.7659 1.1377 14 6 1.6369 -2.2203 0.9730 15 7 0.5511 -2.7912 1.4180 16 6 0.5653 -4.0901 1.0838 17 6 1.7073 -4.3354 0.4137 18 7 2.3859 -3.1489 0.3401 19 6 3.6827 -2.9276 -0.3047 20 6 4.7962 -3.0345 0.7390 21 9 4.7738 -4.3087 1.3161 22 9 6.0344 -2.8226 0.1233 23 9 4.5986 -2.0692 1.7323 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5738 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5611 1.9274 0.8308 28 1 3.0797 1.3444 0.1082 29 1 2.0659 1.5014 -2.1492 30 1 0.5472 2.0843 -1.4266 31 1 2.2924 6.0844 -3.1773 32 1 1.5611 -0.3871 2.0629 33 1 3.0797 -0.6610 1.1758 34 1 -0.2032 -4.8131 1.3141 35 1 2.0247 -5.2847 0.0081 36 1 3.8366 -3.6796 -1.0786 37 1 3.7001 -1.9347 -0.7543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264099905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -103.689369 kcal Electronic energy + Delta-G solvation = -23934.618527 eV Core-core repulsion = 19911.569174 eV Total energy + Delta-G solvation = -4023.049353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.26728 -48.79430 -48.75530 -43.16067 -38.69138 -35.65023 -35.15582 -32.78430 -30.88532 -30.14769 -28.21106 -27.14113 -24.89576 -24.13709 -22.43879 -21.63840 -20.98355 -19.69303 -19.62621 -19.10744 -18.99382 -17.61154 -16.77468 -16.53197 -16.26264 -15.73610 -15.62662 -15.53246 -15.43012 -15.18339 -15.16526 -14.91614 -14.87591 -14.70601 -14.45693 -14.38267 -13.86356 -13.56704 -13.41491 -13.30918 -12.94167 -12.64973 -12.59741 -11.83690 -11.76775 -11.66897 -11.36821 -11.03460 -10.83991 -10.73579 -9.53808 -9.27545 -8.27745 -6.31694 0.76058 1.36786 1.38218 1.39568 1.52153 1.72036 2.07441 2.38005 2.58974 2.80152 3.01259 3.07793 3.08350 3.49553 3.67329 3.75087 4.09431 4.18962 4.25945 4.38266 4.48789 4.56941 4.67716 4.70037 4.79436 4.93792 5.05682 5.18981 5.28737 5.46897 5.63785 5.78051 5.93411 6.01324 6.09273 6.30764 6.76303 7.06613 7.33083 8.88899 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.004352 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.141385 B = 6432.887843 C = 7209.784390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.540 5.540 3 C 0.081 3.919 4 C 0.001 3.999 5 C -0.531 4.531 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.245 1.245 13 C 0.130 3.870 14 C 0.217 3.783 15 N -0.513 5.513 16 C -0.047 4.047 17 C -0.035 4.035 18 N -0.455 5.455 19 C 0.064 3.936 20 C 0.442 3.558 21 F -0.181 7.181 22 F -0.172 7.172 23 F -0.188 7.188 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.217 0.783 36 H 0.178 0.822 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -24.916 3.854 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.265 5.265 3 C -0.046 4.046 4 C -0.037 4.037 5 C -0.569 4.569 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.169 1.169 13 C 0.001 3.999 14 C -0.045 4.045 15 N -0.232 5.232 16 C -0.193 4.193 17 C -0.166 4.166 18 N -0.140 5.140 19 C -0.060 4.060 20 C 0.386 3.614 21 F -0.162 7.162 22 F -0.154 7.154 23 F -0.170 7.170 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.209 0.791 35 H 0.234 0.766 36 H 0.195 0.805 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.840 -24.602 3.743 24.953 hybrid contribution 0.275 0.458 0.060 0.537 sum 2.115 -24.144 3.802 24.533 Atomic orbital electron populations 1.22334 0.86922 1.01964 1.00402 1.62068 1.08865 1.14308 1.41294 1.21895 0.99372 0.85767 0.97548 1.19439 0.96149 0.93266 0.94827 1.21403 1.35086 0.97840 1.02597 0.94722 1.25928 0.96412 0.94717 1.01803 1.70059 1.48135 1.08755 1.32198 0.85686 0.78930 0.80024 0.78171 1.19488 1.21037 1.16869 1.20487 1.01249 0.84813 0.93379 1.23003 0.89698 0.93394 0.98423 1.70262 1.20089 1.09014 1.23849 1.22800 0.99799 0.93037 1.03651 1.23366 0.95157 0.90913 1.07177 1.45121 1.16506 1.09475 1.42855 1.23262 0.77715 1.11698 0.93373 1.21013 0.83981 0.73704 0.82655 1.93212 1.96602 1.40190 1.86213 1.93240 1.45131 1.94605 1.82397 1.93190 1.94893 1.64075 1.64813 0.95706 0.91762 0.91098 0.95900 0.90952 0.95581 0.96535 0.92501 0.92236 0.88134 0.79125 0.76629 0.80470 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 9.17 127.69 1.17 2.20 16 2 N -0.54 -17.42 4.75 -927.05 -4.41 -21.83 16 3 C 0.08 3.11 4.90 86.30 0.42 3.54 16 4 C 0.00 0.04 3.97 29.85 0.12 0.16 16 5 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 6 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 7 C 0.01 0.48 5.47 84.66 0.46 0.95 16 8 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 9 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 13 C 0.13 3.63 5.00 85.55 0.43 4.06 16 14 C 0.22 5.67 6.19 138.13 0.85 6.53 16 15 N -0.51 -14.36 10.51 -188.13 -1.98 -16.33 16 16 C -0.05 -0.98 11.87 83.52 0.99 0.01 16 17 C -0.04 -0.57 11.58 83.09 0.96 0.39 16 18 N -0.46 -8.85 2.64 -514.28 -1.36 -10.21 16 19 C 0.06 0.88 5.69 86.38 0.49 1.37 16 20 C 0.44 7.43 3.29 71.98 0.24 7.67 16 21 F -0.18 -3.17 17.24 44.97 0.78 -2.40 16 22 F -0.17 -2.96 17.32 44.97 0.78 -2.18 16 23 F -0.19 -4.12 14.74 44.97 0.66 -3.46 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 2.16 6.30 -2.39 -0.02 2.14 16 26 H 0.07 2.21 6.72 -2.39 -0.02 2.19 16 27 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 28 H 0.07 2.68 7.93 -2.39 -0.02 2.67 16 29 H 0.03 1.18 7.20 -2.38 -0.02 1.17 16 30 H 0.02 0.75 5.90 -2.38 -0.01 0.73 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 33 H 0.10 2.58 5.51 -2.39 -0.01 2.57 16 34 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.18 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.15 2.14 7.91 -2.38 -0.02 2.12 16 Total: -1.00 -70.91 318.56 4.08 -66.83 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.03 Total: 5.71 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.39 Total: -3.00 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -7.44 Total: -107.31 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.22 Total: -8.03 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -70.91 4.08 -66.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264099905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.856 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds