Wall clock time and date at job start Tue Mar 31 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 S 1.81397 * 109.47034 * 180.02562 * 12 11 10 14 14 C 1.81404 * 102.99915 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47115 * 179.97438 * 14 13 12 16 16 C 1.38241 * 119.99932 * 269.72968 * 15 14 13 17 17 C 1.38237 * 119.99589 * 179.76556 * 16 15 14 18 18 C 1.38231 * 120.00334 * 0.50909 * 17 16 15 19 19 C 1.38236 * 119.99885 * 359.74272 * 18 17 16 20 20 C 1.38231 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 22 22 C 1.53000 * 117.49921 * 3.23472 * 21 9 7 23 23 C 1.52998 * 117.49703 * 294.57074 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 25 25 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 26 26 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 27 27 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 28 28 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 29 29 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 30 30 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 31 31 H 1.08995 * 109.47434 * 300.00214 * 14 13 12 32 32 H 1.08999 * 109.46807 * 60.00336 * 14 13 12 33 33 H 1.07992 * 120.00051 * 359.97438 * 16 15 14 34 34 H 1.08001 * 120.00077 * 180.22916 * 17 16 15 35 35 H 1.08003 * 120.00108 * 179.72566 * 18 17 16 36 36 H 1.08004 * 120.00346 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.00212 * 179.97438 * 20 19 18 38 38 H 1.09004 * 115.54877 * 148.90350 * 21 9 7 39 39 H 1.08998 * 117.50153 * 359.97438 * 22 21 9 40 40 H 1.08995 * 117.49708 * 145.02504 * 22 21 9 41 41 H 1.08995 * 117.49988 * 214.98174 * 23 21 9 42 42 H 1.08997 * 117.49880 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 16 1.0724 -2.6204 5.6064 14 6 -0.2550 -2.5113 6.8379 15 6 0.3257 -2.6782 8.2185 16 6 0.4213 -3.9376 8.7804 17 6 0.9585 -4.0912 10.0449 18 6 1.3902 -2.9845 10.7516 19 6 1.2898 -1.7245 10.1918 20 6 0.7571 -1.5714 8.9255 21 6 1.7039 -3.6309 -0.1884 22 6 2.7655 -3.6431 -1.2902 23 6 1.2873 -3.8149 -1.6490 24 1 -0.4849 0.8379 0.0599 25 1 -0.0520 -1.3115 1.5493 26 1 -0.2968 -3.0711 1.4393 27 1 1.6864 -3.4373 2.8821 28 1 1.9312 -1.6776 2.9921 29 1 -0.3060 -1.4305 4.0317 30 1 -0.5514 -3.1900 3.9221 31 1 -0.7411 -1.5386 6.7630 32 1 -0.9865 -3.2982 6.6543 33 1 0.0796 -4.8018 8.2303 34 1 1.0367 -5.0755 10.4825 35 1 1.8058 -3.1041 11.7413 36 1 1.6267 -0.8597 10.7441 37 1 0.6782 -0.5871 8.4882 38 1 1.6465 -4.5015 0.4649 39 1 3.2380 -2.6944 -1.5444 40 1 3.4061 -4.5220 -1.3619 41 1 0.9562 -4.8067 -1.9568 42 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270577282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:56 Heat of formation + Delta-G solvation = 58.321201 kcal Electronic energy + Delta-G solvation = -19787.332326 eV Core-core repulsion = 16859.458234 eV Total energy + Delta-G solvation = -2927.874093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.33877 -37.11774 -34.31393 -32.97636 -32.38449 -31.06029 -29.96795 -27.26884 -25.72541 -23.68539 -22.74163 -21.69622 -21.38041 -20.69896 -19.63146 -17.03896 -16.43642 -15.83178 -15.51768 -15.39938 -15.31731 -14.69898 -14.43263 -14.07036 -13.73347 -13.58672 -13.35040 -12.85116 -12.81110 -12.67389 -12.04003 -11.76615 -11.59187 -11.27161 -11.18999 -10.97366 -10.92369 -10.71793 -10.63593 -10.16962 -10.03988 -9.74829 -9.60023 -9.53661 -9.25047 -9.08607 -8.78769 -8.47834 -7.45808 -6.58457 -5.80290 -3.40359 0.94190 1.24451 2.06748 2.83779 3.33779 3.43062 3.46186 3.70790 4.44003 4.51878 4.62341 4.83021 4.93717 4.95315 5.04696 5.17000 5.31865 5.32304 5.41711 5.42821 5.46100 5.68618 5.81187 5.87420 5.92479 6.02349 6.11541 6.27181 6.27708 6.33480 6.34659 6.42488 6.50079 6.55940 6.69575 6.72790 6.81573 7.04779 7.14572 7.22957 7.65295 7.79373 8.45668 9.13507 9.76752 10.32143 11.15099 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003120 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.612043 B = 8972.287714 C = 9885.635608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.010 3.990 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.551 5.551 10 C 0.152 3.848 11 C -0.118 4.118 12 C -0.073 4.073 13 S -0.263 6.263 14 C -0.053 4.053 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.103 4.103 21 C 0.121 3.879 22 C -0.196 4.196 23 C -0.222 4.222 24 H 0.254 0.746 25 H 0.102 0.898 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -6.432 17.282 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.267 5.267 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.222 4.222 13 S -0.033 6.033 14 C -0.200 4.200 15 C -0.067 4.067 16 C -0.123 4.123 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.123 4.123 21 C 0.011 3.989 22 C -0.235 4.235 23 C -0.263 4.263 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.187 -6.423 17.360 18.511 hybrid contribution -0.879 1.057 -0.273 1.401 sum -1.066 -5.366 17.087 17.942 Atomic orbital electron populations 1.70054 1.05509 1.25889 1.51238 1.25112 0.94990 0.98738 1.00169 0.86357 0.79924 0.84000 0.77361 1.19970 1.21662 1.21317 1.19125 0.94437 0.85501 1.39348 0.91583 1.43419 1.49137 1.01472 1.32712 1.20957 0.90458 1.03086 0.83112 1.22031 0.97998 1.01867 0.94007 1.23485 1.01211 1.04247 0.93264 1.87190 1.17967 1.96154 1.02036 1.22275 0.98921 1.05351 0.93458 1.19296 0.99704 0.93862 0.93827 1.21061 0.99190 0.96614 0.95456 1.21123 0.99158 0.98799 0.94871 1.21166 1.00070 0.92825 0.99937 1.21135 0.99719 0.97481 0.95556 1.21086 0.98034 0.98545 0.94586 1.21221 1.00383 0.90195 0.87062 1.23033 0.91904 1.01853 1.06671 1.23364 0.97396 1.00604 1.04933 0.93643 0.88073 0.95557 0.92910 0.91296 0.90254 0.90751 0.89366 0.89456 0.85848 0.85998 0.86159 0.85968 0.85774 0.89580 0.88491 0.90763 0.91249 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 11.33 55.49 0.63 -24.11 16 2 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 3 Si 0.89 21.32 29.61 -169.99 -5.03 16.29 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.79 8.63 -15.05 -0.13 -6.92 16 8 H 0.07 1.78 6.55 -52.49 -0.34 1.44 16 9 N -0.55 -13.50 2.78 -165.66 -0.46 -13.96 16 10 C 0.15 3.42 5.34 -4.05 -0.02 3.40 16 11 C -0.12 -2.30 5.55 -26.73 -0.15 -2.44 16 12 C -0.07 -1.19 5.94 37.16 0.22 -0.97 16 13 S -0.26 -4.05 21.72 -107.50 -2.33 -6.38 16 14 C -0.05 -0.63 6.07 36.00 0.22 -0.41 16 15 C -0.07 -0.76 5.14 -104.62 -0.54 -1.30 16 16 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 17 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 18 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 21 C 0.12 2.60 6.56 -67.93 -0.45 2.15 16 22 C -0.20 -3.92 9.80 -26.69 -0.26 -4.19 16 23 C -0.22 -4.57 10.36 -26.69 -0.28 -4.84 16 24 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 25 H 0.10 2.57 5.36 -51.93 -0.28 2.29 16 26 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.09 0.94 8.08 -51.92 -0.42 0.52 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.10 2.11 6.37 -51.93 -0.33 1.78 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -28.70 360.90 -12.03 -40.73 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.84 Total: 4.94 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.43 Total: -22.95 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.17 Total: -38.07 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.33 Total: -6.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.70 -12.03 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270577282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.051 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds