Wall clock time and date at job start Tue Mar 31 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 S 1.81397 * 109.47034 * 180.02562 * 12 11 10 14 14 C 1.81404 * 102.99915 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47115 * 179.97438 * 14 13 12 16 16 C 1.38241 * 119.99932 * 269.72968 * 15 14 13 17 17 C 1.38237 * 119.99589 * 179.76556 * 16 15 14 18 18 C 1.38231 * 120.00334 * 0.50909 * 17 16 15 19 19 C 1.38236 * 119.99885 * 359.74272 * 18 17 16 20 20 C 1.38231 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 22 22 C 1.53000 * 117.49921 * 3.23472 * 21 9 7 23 23 C 1.52998 * 117.49703 * 294.57074 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 25 25 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 26 26 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 27 27 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 28 28 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 29 29 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 30 30 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 31 31 H 1.08995 * 109.47434 * 300.00214 * 14 13 12 32 32 H 1.08999 * 109.46807 * 60.00336 * 14 13 12 33 33 H 1.07992 * 120.00051 * 359.97438 * 16 15 14 34 34 H 1.08001 * 120.00077 * 180.22916 * 17 16 15 35 35 H 1.08003 * 120.00108 * 179.72566 * 18 17 16 36 36 H 1.08004 * 120.00346 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.00212 * 179.97438 * 20 19 18 38 38 H 1.09004 * 115.54877 * 148.90350 * 21 9 7 39 39 H 1.08998 * 117.50153 * 359.97438 * 22 21 9 40 40 H 1.08995 * 117.49708 * 145.02504 * 22 21 9 41 41 H 1.08995 * 117.49988 * 214.98174 * 23 21 9 42 42 H 1.08997 * 117.49880 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 16 1.0724 -2.6204 5.6064 14 6 -0.2550 -2.5113 6.8379 15 6 0.3257 -2.6782 8.2185 16 6 0.4213 -3.9376 8.7804 17 6 0.9585 -4.0912 10.0449 18 6 1.3902 -2.9845 10.7516 19 6 1.2898 -1.7245 10.1918 20 6 0.7571 -1.5714 8.9255 21 6 1.7039 -3.6309 -0.1884 22 6 2.7655 -3.6431 -1.2902 23 6 1.2873 -3.8149 -1.6490 24 1 -0.4849 0.8379 0.0599 25 1 -0.0520 -1.3115 1.5493 26 1 -0.2968 -3.0711 1.4393 27 1 1.6864 -3.4373 2.8821 28 1 1.9312 -1.6776 2.9921 29 1 -0.3060 -1.4305 4.0317 30 1 -0.5514 -3.1900 3.9221 31 1 -0.7411 -1.5386 6.7630 32 1 -0.9865 -3.2982 6.6543 33 1 0.0796 -4.8018 8.2303 34 1 1.0367 -5.0755 10.4825 35 1 1.8058 -3.1041 11.7413 36 1 1.6267 -0.8597 10.7441 37 1 0.6782 -0.5871 8.4882 38 1 1.6465 -4.5015 0.4649 39 1 3.2380 -2.6944 -1.5444 40 1 3.4061 -4.5220 -1.3619 41 1 0.9562 -4.8067 -1.9568 42 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270577282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:55 Heat of formation + Delta-G solvation = 47.066509 kcal Electronic energy + Delta-G solvation = -19787.820366 eV Core-core repulsion = 16859.458234 eV Total energy + Delta-G solvation = -2928.362133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.08639 -38.87829 -35.99526 -34.22486 -33.78230 -31.79588 -31.79441 -28.20930 -27.46984 -25.44452 -23.48413 -23.10344 -22.68439 -22.05638 -21.44181 -18.34833 -17.80091 -17.32620 -16.96417 -16.43028 -16.34410 -16.08442 -16.01222 -15.43572 -15.26927 -14.55208 -14.33399 -14.29285 -13.87198 -13.74130 -13.68923 -13.26371 -13.13545 -12.75543 -12.62425 -12.54874 -12.35571 -12.04517 -11.98671 -11.91024 -11.73509 -11.43085 -11.30678 -10.99225 -10.87669 -10.48086 -9.83655 -9.60833 -8.67175 -8.54631 -7.80912 -5.45574 0.05678 0.49517 1.02290 1.41879 1.46148 1.55293 1.68627 2.48261 2.94165 3.13264 3.40731 3.47800 3.67506 3.82956 4.02328 4.14862 4.21418 4.24955 4.28928 4.30034 4.47415 4.50530 4.52494 4.60761 4.63811 4.69605 4.73087 4.91489 4.93724 5.05080 5.06669 5.09088 5.14992 5.34729 5.44436 5.53759 5.54648 5.60867 5.63830 5.67714 5.83194 6.09065 6.44352 7.14191 7.84592 8.33842 9.09826 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003120 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.612043 B = 8972.287714 C = 9885.635608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.035 4.035 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.570 5.570 10 C 0.154 3.846 11 C -0.099 4.099 12 C -0.064 4.064 13 S -0.293 6.293 14 C -0.037 4.037 15 C -0.086 4.086 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.119 4.119 21 C 0.100 3.900 22 C -0.183 4.183 23 C -0.216 4.216 24 H 0.251 0.749 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -7.858 19.015 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.233 4.233 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.388 4.388 8 H 0.076 0.924 9 N -0.288 5.288 10 C 0.026 3.974 11 C -0.140 4.140 12 C -0.213 4.213 13 S -0.064 6.064 14 C -0.185 4.185 15 C -0.087 4.087 16 C -0.134 4.134 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.008 4.008 22 C -0.222 4.222 23 C -0.257 4.257 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.313 -7.864 19.082 20.641 hybrid contribution -1.022 1.422 -0.716 1.893 sum -0.709 -6.442 18.365 19.475 Atomic orbital electron populations 1.70160 1.06531 1.26178 1.52760 1.25709 0.95638 1.01174 1.00747 0.85505 0.79036 0.80807 0.76941 1.19472 1.21880 1.21328 1.19244 0.94207 0.86733 1.38599 0.92423 1.43638 1.49314 1.02017 1.33792 1.20855 0.90586 1.01682 0.84228 1.21678 0.97578 1.00835 0.93885 1.23255 1.00486 1.04622 0.92936 1.87232 1.20304 1.96181 1.02639 1.22291 0.97550 1.06186 0.92436 1.19358 1.01085 0.94644 0.93659 1.21278 0.99401 0.96495 0.96246 1.21465 0.98385 1.00156 0.94433 1.21549 0.99100 0.92393 1.00952 1.21440 0.99270 0.98710 0.95199 1.21264 0.98594 0.98555 0.95458 1.21536 1.01743 0.89738 0.87831 1.23043 0.91855 1.02256 1.04998 1.23274 0.97738 1.00951 1.03736 0.93961 0.90990 0.94793 0.92519 0.94093 0.90827 0.89011 0.88893 0.88076 0.85081 0.83703 0.83564 0.84061 0.85773 0.87108 0.90824 0.87077 0.87894 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.46 11.33 21.65 0.25 -52.22 16 2 C -0.04 -1.95 4.96 84.86 0.42 -1.53 16 3 Si 0.95 44.78 29.61 68.60 2.03 46.81 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.26 -14.01 8.63 84.03 0.73 -13.29 16 8 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 9 N -0.57 -28.22 2.78 -678.03 -1.88 -30.10 16 10 C 0.15 7.04 5.34 86.38 0.46 7.50 16 11 C -0.10 -3.88 5.55 30.59 0.17 -3.71 16 12 C -0.06 -2.07 5.94 71.98 0.43 -1.64 16 13 S -0.29 -8.87 21.72 -56.49 -1.23 -10.09 16 14 C -0.04 -0.86 6.07 71.24 0.43 -0.43 16 15 C -0.09 -1.90 5.14 -19.86 -0.10 -2.00 16 16 C -0.11 -2.25 9.70 22.27 0.22 -2.03 16 17 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 18 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 19 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 20 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 21 C 0.10 4.19 6.56 44.99 0.30 4.48 16 22 C -0.18 -7.06 9.80 30.62 0.30 -6.76 16 23 C -0.22 -8.65 10.36 30.62 0.32 -8.33 16 24 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 25 H 0.07 3.78 5.36 -2.38 -0.01 3.76 16 26 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 27 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 32 H 0.10 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 39 H 0.07 3.19 6.37 -2.39 -0.02 3.17 16 40 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.67 360.90 4.69 -57.99 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.97 Total: 23.17 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.55 Total: -35.55 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.64 Total: -82.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.23 Total: -10.09 kcal Total: -62.67 4.69 -57.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270577282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.052 kcal (2) G-P(sol) polarization free energy of solvation -62.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds