Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47475 * 2 1 4 4 C 1.34775 * 120.00160 * 180.02562 * 3 2 1 5 5 O 1.21588 * 120.00080 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99661 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99840 * 179.97438 * 6 4 3 8 8 N 1.40104 * 120.00389 * 359.97438 * 6 4 3 9 9 C 1.34776 * 119.99902 * 255.00305 * 8 6 4 10 10 O 1.21592 * 119.99839 * 359.97438 * 9 8 6 11 11 C 1.47634 * 119.99869 * 180.02562 * 9 8 6 12 12 C 1.40016 * 119.89772 * 0.24248 * 11 9 8 13 13 C 1.36315 * 120.10695 * 180.25948 * 12 11 9 14 14 C 1.40885 * 119.89334 * 359.47978 * 13 12 11 15 15 C 1.41111 * 120.10536 * 180.30167 * 14 13 12 16 16 H 1.07996 * 120.00198 * 154.52656 * 15 14 13 17 17 C 1.40227 * 119.99546 * 334.52369 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.06447 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06669 * 17 15 14 20 20 H 1.48503 * 109.47357 * 59.99742 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47336 * 300.00015 * 19 17 15 23 23 C 1.40888 * 119.79168 * 0.27218 * 14 13 12 24 24 C 1.36313 * 119.89186 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47458 * 300.00476 * 1 2 3 26 26 H 1.09007 * 109.46777 * 60.00478 * 1 2 3 27 27 H 1.08998 * 109.47531 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46947 * 239.99404 * 2 1 3 29 29 H 1.08998 * 109.46637 * 120.00111 * 2 1 3 30 30 H 0.97006 * 119.99833 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46987 * 269.99998 * 7 6 4 32 32 H 1.09007 * 109.46735 * 29.99648 * 7 6 4 33 33 H 1.08999 * 109.47267 * 149.99513 * 7 6 4 34 34 H 0.96999 * 119.99338 * 75.00360 * 8 6 4 35 35 H 1.08000 * 119.94850 * 0.03457 * 12 11 9 36 36 H 1.08004 * 120.05046 * 179.74690 * 13 12 11 37 37 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.05374 * 180.02562 * 23 14 13 39 39 H 1.07999 * 119.94443 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1336 0.7032 -0.0005 6 7 3.7927 2.8981 -0.0010 7 6 5.2331 3.1658 -0.0010 8 7 2.8823 3.9630 -0.0016 9 6 2.6741 4.6710 -1.1294 10 8 3.2767 4.3857 -2.1462 11 6 1.7152 5.7935 -1.1298 12 6 1.0270 6.1240 0.0440 13 6 0.1367 7.1563 0.0470 14 6 -0.0823 7.8981 -1.1305 15 6 -0.9981 8.9716 -1.1307 16 1 -0.8870 9.7761 -1.8425 17 6 -2.0526 8.9937 -0.2065 18 7 -2.3933 7.9003 0.4221 19 14 -2.9701 10.5865 0.1256 20 1 -3.5868 11.0746 -1.1340 21 1 -4.0323 10.3448 1.1349 22 1 -2.0211 11.6066 0.6397 23 6 0.6164 7.5651 -2.3077 24 6 1.5001 6.5273 -2.3027 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.5902 3.2326 1.0266 32 1 5.7529 2.3568 -0.5145 33 1 5.4277 4.1069 -0.5153 34 1 2.4019 4.1907 0.8098 35 1 1.1991 5.5578 0.9474 36 1 -0.3966 7.4078 0.9519 37 1 -3.1224 7.9157 1.0616 38 1 0.4520 8.1312 -3.2128 39 1 2.0359 6.2710 -3.2047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272515925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -15.580359 kcal Electronic energy + Delta-G solvation = -22749.201850 eV Core-core repulsion = 19271.829931 eV Total energy + Delta-G solvation = -3477.371919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30572 -38.87468 -37.28745 -35.63495 -35.18648 -34.01438 -31.75939 -30.56916 -29.89623 -29.58360 -26.63180 -25.80692 -22.96180 -22.34174 -21.18569 -20.56487 -19.82766 -18.83372 -17.64980 -16.99738 -16.64128 -15.69693 -15.52432 -15.12779 -14.55235 -14.33614 -14.10998 -14.08728 -13.84786 -13.37328 -12.93001 -12.89336 -12.59170 -12.28191 -12.15624 -12.04730 -11.88837 -11.55437 -11.53228 -11.36325 -11.10852 -10.79080 -10.47721 -10.20074 -9.69856 -9.64457 -9.46983 -9.17651 -9.10786 -8.49207 -7.87833 -7.69951 -7.16147 -4.74440 2.04216 2.07976 2.84190 2.87308 2.90077 2.90749 3.20219 3.30048 3.63397 3.68121 4.41412 4.76468 4.95381 5.04098 5.28315 5.41683 5.46485 5.56623 5.69085 5.76417 5.85359 5.86571 5.89548 5.97584 6.17062 6.49610 6.59658 6.64129 6.69765 6.85590 6.97290 7.04864 7.28538 7.44543 7.59432 7.71833 7.86070 7.93945 8.02162 8.25708 8.49294 8.52745 8.60259 8.96926 9.75574 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003674 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.471121 B = 7618.671222 C = 8394.127369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.742 5.742 4 C 0.716 3.284 5 O -0.588 6.588 6 N -0.425 5.425 7 C 0.113 3.887 8 N -0.541 5.541 9 C 0.571 3.429 10 O -0.554 6.554 11 C -0.283 4.283 12 C -0.063 4.063 13 C -0.175 4.175 14 C 0.130 3.870 15 C -0.438 4.438 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.769 5.769 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.237 4.237 24 C -0.017 4.017 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.401 0.599 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.100 0.900 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -5.925 4.347 7.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.398 5.398 4 C 0.417 3.583 5 O -0.465 6.465 6 N -0.252 5.252 7 C -0.030 4.030 8 N -0.294 5.294 9 C 0.367 3.633 10 O -0.432 6.432 11 C -0.289 4.289 12 C -0.082 4.082 13 C -0.194 4.194 14 C 0.127 3.873 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.392 5.392 19 Si 0.738 3.262 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.256 4.256 24 C -0.036 4.036 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.236 0.764 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.426 -6.985 3.799 8.313 hybrid contribution -1.089 1.164 0.637 1.716 sum 1.337 -5.820 4.435 7.439 Atomic orbital electron populations 1.22020 0.94316 1.03067 1.02992 1.21157 0.94047 0.81769 1.02115 1.45179 1.05534 1.09408 1.79704 1.15831 0.83050 0.81838 0.77598 1.90916 1.55229 1.41143 1.59174 1.46183 1.02592 0.97473 1.78956 1.21712 0.76812 1.03054 1.01456 1.45382 1.41447 1.28034 1.14533 1.19107 0.81540 0.81372 0.81302 1.90687 1.50692 1.69475 1.32373 1.18639 1.09357 1.03786 0.97146 1.20450 0.95990 0.97102 0.94661 1.20977 1.00608 0.98890 0.98934 1.17803 0.88975 0.90204 0.90354 1.19884 1.07363 1.05629 1.13624 0.89566 1.26116 0.97057 0.97885 0.93713 1.69715 1.22873 1.27921 1.18663 0.86230 0.79070 0.81449 0.79410 1.18578 1.19961 1.18384 1.20724 1.05183 1.01981 0.97751 1.20337 0.94583 0.93216 0.95476 0.91827 0.91720 0.90741 0.91738 0.91688 0.76351 0.92797 0.89757 0.90673 0.74672 0.89304 0.86068 0.90006 0.88188 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.03 37.16 0.37 -1.14 16 2 C 0.13 1.57 6.39 -4.04 -0.03 1.54 16 3 N -0.74 -10.58 5.52 -65.23 -0.36 -10.94 16 4 C 0.72 12.18 8.40 -86.92 -0.73 11.45 16 5 O -0.59 -11.35 15.92 5.29 0.08 -11.27 16 6 N -0.42 -6.92 3.15 -72.06 -0.23 -7.15 16 7 C 0.11 1.61 10.51 59.85 0.63 2.24 16 8 N -0.54 -8.67 4.78 30.48 0.15 -8.52 16 9 C 0.57 11.29 7.75 -12.43 -0.10 11.20 16 10 O -0.55 -12.70 16.50 5.29 0.09 -12.61 16 11 C -0.28 -5.89 5.89 -104.73 -0.62 -6.50 16 12 C -0.06 -1.25 9.47 -39.61 -0.38 -1.62 16 13 C -0.17 -3.93 8.63 -39.27 -0.34 -4.27 16 14 C 0.13 3.08 5.57 -106.80 -0.59 2.49 16 15 C -0.44 -10.22 9.05 -37.75 -0.34 -10.57 16 16 H 0.09 1.92 7.90 -52.49 -0.41 1.51 16 17 C 0.07 1.62 5.15 -17.31 -0.09 1.53 16 18 N -0.77 -17.23 10.95 55.56 0.61 -16.62 16 19 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 22 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 23 C -0.24 -5.35 9.73 -39.27 -0.38 -5.73 16 24 C -0.02 -0.37 9.52 -39.61 -0.38 -0.74 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.40 5.45 7.51 -40.82 -0.31 5.15 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.23 7.42 -51.92 -0.39 0.84 16 33 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.41 5.60 6.83 -182.60 -1.25 4.35 16 35 H 0.09 1.44 6.37 -52.49 -0.33 1.10 16 36 H 0.12 2.77 6.18 -52.48 -0.32 2.45 16 37 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -28.80 336.95 -8.51 -37.31 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.93 Total: 13.62 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.97 Total: -0.13 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.17 Total: -43.24 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.17 Total: -23.88 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.80 -8.51 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272515925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.726 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds