Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47475 * 2 1 4 4 C 1.34775 * 120.00160 * 180.02562 * 3 2 1 5 5 O 1.21588 * 120.00080 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99661 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99840 * 179.97438 * 6 4 3 8 8 N 1.40104 * 120.00389 * 359.97438 * 6 4 3 9 9 C 1.34776 * 119.99902 * 255.00305 * 8 6 4 10 10 O 1.21592 * 119.99839 * 359.97438 * 9 8 6 11 11 C 1.47634 * 119.99869 * 180.02562 * 9 8 6 12 12 C 1.40016 * 119.89772 * 0.24248 * 11 9 8 13 13 C 1.36315 * 120.10695 * 180.25948 * 12 11 9 14 14 C 1.40885 * 119.89334 * 359.47978 * 13 12 11 15 15 C 1.41111 * 120.10536 * 180.30167 * 14 13 12 16 16 H 1.07996 * 120.00198 * 154.52656 * 15 14 13 17 17 C 1.40227 * 119.99546 * 334.52369 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.06447 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06669 * 17 15 14 20 20 H 1.48503 * 109.47357 * 59.99742 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47336 * 300.00015 * 19 17 15 23 23 C 1.40888 * 119.79168 * 0.27218 * 14 13 12 24 24 C 1.36313 * 119.89186 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47458 * 300.00476 * 1 2 3 26 26 H 1.09007 * 109.46777 * 60.00478 * 1 2 3 27 27 H 1.08998 * 109.47531 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46947 * 239.99404 * 2 1 3 29 29 H 1.08998 * 109.46637 * 120.00111 * 2 1 3 30 30 H 0.97006 * 119.99833 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46987 * 269.99998 * 7 6 4 32 32 H 1.09007 * 109.46735 * 29.99648 * 7 6 4 33 33 H 1.08999 * 109.47267 * 149.99513 * 7 6 4 34 34 H 0.96999 * 119.99338 * 75.00360 * 8 6 4 35 35 H 1.08000 * 119.94850 * 0.03457 * 12 11 9 36 36 H 1.08004 * 120.05046 * 179.74690 * 13 12 11 37 37 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.05374 * 180.02562 * 23 14 13 39 39 H 1.07999 * 119.94443 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1336 0.7032 -0.0005 6 7 3.7927 2.8981 -0.0010 7 6 5.2331 3.1658 -0.0010 8 7 2.8823 3.9630 -0.0016 9 6 2.6741 4.6710 -1.1294 10 8 3.2767 4.3857 -2.1462 11 6 1.7152 5.7935 -1.1298 12 6 1.0270 6.1240 0.0440 13 6 0.1367 7.1563 0.0470 14 6 -0.0823 7.8981 -1.1305 15 6 -0.9981 8.9716 -1.1307 16 1 -0.8870 9.7761 -1.8425 17 6 -2.0526 8.9937 -0.2065 18 7 -2.3933 7.9003 0.4221 19 14 -2.9701 10.5865 0.1256 20 1 -3.5868 11.0746 -1.1340 21 1 -4.0323 10.3448 1.1349 22 1 -2.0211 11.6066 0.6397 23 6 0.6164 7.5651 -2.3077 24 6 1.5001 6.5273 -2.3027 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.5902 3.2326 1.0266 32 1 5.7529 2.3568 -0.5145 33 1 5.4277 4.1069 -0.5153 34 1 2.4019 4.1907 0.8098 35 1 1.1991 5.5578 0.9474 36 1 -0.3966 7.4078 0.9519 37 1 -3.1224 7.9157 1.0616 38 1 0.4520 8.1312 -3.2128 39 1 2.0359 6.2710 -3.2047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272515925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -32.863942 kcal Electronic energy + Delta-G solvation = -22749.951322 eV Core-core repulsion = 19271.829931 eV Total energy + Delta-G solvation = -3478.121391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67878 -40.41721 -38.93275 -36.98114 -36.42843 -35.68381 -33.26681 -31.55479 -31.50097 -31.27367 -28.01607 -27.26703 -24.28572 -23.57277 -22.84187 -22.04236 -21.27924 -20.15640 -19.34783 -18.54379 -17.89499 -17.24921 -16.78623 -16.49418 -15.89113 -15.75420 -15.59005 -15.35899 -15.29866 -15.03814 -14.51533 -14.03312 -13.92335 -13.72697 -13.48743 -13.24960 -13.19915 -12.84788 -12.73317 -12.65552 -12.43593 -12.37502 -11.88278 -11.79441 -11.36972 -11.20794 -11.08036 -10.69308 -10.36574 -9.77417 -9.57454 -9.42679 -8.79366 -6.49027 0.38283 0.75898 1.16919 1.40846 1.45172 1.53532 1.88524 2.04542 2.10486 2.18074 2.75626 3.48980 3.68654 4.05330 4.16434 4.19836 4.30573 4.36642 4.44556 4.48601 4.52139 4.75755 4.87087 4.94346 5.02376 5.03081 5.14068 5.22040 5.28399 5.30645 5.42884 5.58552 5.78032 5.78669 5.90822 5.99495 6.23081 6.39089 6.54359 6.66723 6.77446 6.88038 7.21706 7.50185 8.15171 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003674 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.471121 B = 7618.671222 C = 8394.127369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 N -0.736 5.736 4 C 0.708 3.292 5 O -0.614 6.614 6 N -0.429 5.429 7 C 0.109 3.891 8 N -0.520 5.520 9 C 0.579 3.421 10 O -0.587 6.587 11 C -0.285 4.285 12 C -0.048 4.048 13 C -0.194 4.194 14 C 0.105 3.895 15 C -0.471 4.471 16 H 0.085 0.915 17 C 0.042 3.958 18 N -0.793 5.793 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.251 4.251 24 C -0.027 4.027 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.405 0.595 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.427 0.573 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.298 0.702 38 H 0.103 0.897 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -6.138 5.837 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 N -0.392 5.392 4 C 0.409 3.591 5 O -0.492 6.492 6 N -0.256 5.256 7 C -0.033 4.033 8 N -0.273 5.273 9 C 0.374 3.626 10 O -0.468 6.468 11 C -0.291 4.291 12 C -0.067 4.067 13 C -0.213 4.213 14 C 0.101 3.899 15 C -0.497 4.497 16 H 0.103 0.897 17 C -0.178 4.178 18 N -0.416 5.416 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.183 1.183 23 C -0.270 4.270 24 C -0.046 4.046 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.241 0.759 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.272 0.728 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.720 -7.213 5.323 9.128 hybrid contribution -0.817 1.123 0.154 1.398 sum 0.903 -6.090 5.477 8.240 Atomic orbital electron populations 1.21983 0.92055 1.04513 1.02948 1.21350 0.95849 0.80431 1.01876 1.45298 1.04649 1.10605 1.78615 1.16048 0.83721 0.81688 0.77667 1.90894 1.56078 1.41817 1.60460 1.46361 1.03164 0.97212 1.78866 1.21842 0.75766 1.02523 1.03147 1.44982 1.41126 1.27216 1.13995 1.18881 0.80879 0.81246 0.81626 1.90680 1.51808 1.70399 1.33882 1.18798 1.09373 1.03860 0.97067 1.20719 0.94145 0.96122 0.95727 1.21014 1.01830 1.00111 0.98387 1.18138 0.89604 0.90990 0.91131 1.20139 1.08525 1.06027 1.15056 0.89682 1.26841 0.97251 1.00831 0.92917 1.69727 1.23488 1.29471 1.18926 0.85207 0.77860 0.77267 0.79294 1.18501 1.18816 1.18288 1.20837 1.05723 1.02557 0.97901 1.20464 0.94605 0.93370 0.96203 0.91091 0.92427 0.88597 0.92714 0.91200 0.75930 0.89985 0.90290 0.91149 0.72827 0.85282 0.86644 0.89067 0.87864 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.03 71.98 0.72 -1.80 16 2 C 0.13 2.82 6.39 86.38 0.55 3.38 16 3 N -0.74 -19.80 5.52 -478.55 -2.64 -22.44 16 4 C 0.71 23.11 8.40 179.06 1.50 24.62 16 5 O -0.61 -23.15 15.92 -3.99 -0.06 -23.21 16 6 N -0.43 -13.24 3.15 -500.17 -1.58 -14.82 16 7 C 0.11 2.97 10.51 127.77 1.34 4.31 16 8 N -0.52 -15.56 4.78 -175.74 -0.84 -16.40 16 9 C 0.58 22.10 7.75 86.72 0.67 22.77 16 10 O -0.59 -26.55 16.50 -4.00 -0.07 -26.61 16 11 C -0.28 -11.57 5.89 -19.94 -0.12 -11.68 16 12 C -0.05 -1.84 9.47 22.25 0.21 -1.63 16 13 C -0.19 -8.66 8.63 22.47 0.19 -8.46 16 14 C 0.10 5.03 5.57 -21.28 -0.12 4.91 16 15 C -0.47 -22.27 9.05 23.46 0.21 -22.05 16 16 H 0.09 3.87 7.90 -2.91 -0.02 3.85 16 17 C 0.04 1.80 5.15 85.35 0.44 2.24 16 18 N -0.79 -35.17 10.95 21.87 0.24 -34.93 16 19 Si 0.98 32.65 29.59 68.60 2.03 34.68 16 20 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 21 H -0.26 -8.22 7.11 99.48 0.71 -7.52 16 22 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 23 C -0.25 -11.53 9.73 22.47 0.22 -11.31 16 24 C -0.03 -1.19 9.52 22.25 0.21 -0.98 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.41 10.18 7.51 -92.70 -0.70 9.48 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.24 7.42 -2.38 -0.02 2.22 16 33 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.43 10.30 6.83 -213.32 -1.46 8.84 16 35 H 0.13 3.76 6.37 -2.91 -0.02 3.74 16 36 H 0.12 5.24 6.18 -2.91 -0.02 5.22 16 37 H 0.30 11.75 8.29 -92.70 -0.77 10.98 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.10 4.42 7.63 -2.91 -0.02 4.40 16 Total: -1.00 -61.80 336.95 2.07 -59.73 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -1.06 Total: 39.68 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.04 Total: 4.31 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.82 Total: -88.58 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.13 Total: -49.82 kcal Atomic # 14 Polarization: 32.65 SS G_CDS: 2.03 Total: 34.68 kcal Total: -61.80 2.07 -59.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272515925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.867 kcal (2) G-P(sol) polarization free energy of solvation -61.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds