Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21292 * 120.00066 * 2 1 4 4 N 1.34775 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.39924 * 120.00136 * 174.89438 * 4 2 1 6 6 C 1.38948 * 120.03610 * 326.59480 * 5 4 2 7 7 C 1.38136 * 120.06979 * 180.02562 * 6 5 4 8 8 C 1.38187 * 120.13716 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.07480 * 359.97438 * 8 7 6 10 10 N 1.39940 * 120.03639 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99846 * 147.00233 * 10 9 8 12 12 O 1.21588 * 119.99779 * 354.62254 * 11 10 9 13 13 N 1.34770 * 119.99694 * 174.62831 * 11 10 9 14 14 C 1.46505 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47370 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99830 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46868 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46894 * 120.00058 * 20 18 16 23 23 H 1.48492 * 109.46894 * 240.00110 * 20 18 16 24 24 C 1.38733 * 120.03404 * 146.87075 * 5 4 2 25 25 H 1.09006 * 109.47497 * 240.00351 * 1 2 3 26 26 H 1.09004 * 109.47166 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47446 * 120.00500 * 1 2 3 28 28 H 0.97003 * 119.99951 * 354.90232 * 4 2 1 29 29 H 1.07999 * 119.96056 * 0.02562 * 6 5 4 30 30 H 1.07994 * 119.93067 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.96224 * 180.02562 * 8 7 6 32 32 H 0.96994 * 120.00159 * 326.71926 * 10 9 8 33 33 H 0.96998 * 120.00321 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.47195 * 299.99990 * 14 13 11 35 35 H 1.09006 * 109.46639 * 60.00018 * 14 13 11 36 36 H 1.09000 * 109.47723 * 300.00565 * 15 14 13 37 37 H 1.09000 * 109.47061 * 60.00163 * 15 14 13 38 38 H 0.97000 * 119.99920 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07312 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 -0.1073 6 6 4.2166 -0.1975 -0.8657 7 6 5.5938 -0.1996 -0.9730 8 6 6.3386 -1.1676 -0.3266 9 6 5.7043 -2.1415 0.4338 10 7 6.4593 -3.1211 1.0885 11 6 6.0416 -3.6156 2.2707 12 8 5.0629 -3.1430 2.8157 13 7 6.7089 -4.6340 2.8487 14 6 6.2552 -5.1712 4.1339 15 6 7.1795 -6.3118 4.5648 16 6 6.7124 -6.8649 5.8865 17 1 5.8430 -6.4451 6.3706 18 6 7.3951 -7.9068 6.4778 19 7 8.4541 -8.4175 5.8885 20 14 6.8165 -8.5918 8.1166 21 1 5.6121 -7.8485 8.5663 22 1 6.4806 -10.0300 7.9610 23 1 7.8964 -8.4419 9.1247 24 6 4.3205 -2.1462 0.5382 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 1.6987 -2.0056 0.0755 29 1 3.6372 0.5605 -1.3717 30 1 6.0894 0.5568 -1.5634 31 1 7.4152 -1.1663 -0.4122 32 1 7.2812 -3.4470 0.6896 33 1 7.4896 -5.0112 2.4137 34 1 6.2767 -4.3821 4.8855 35 1 5.2375 -5.5478 4.0313 36 1 7.1578 -7.1009 3.8131 37 1 8.1974 -5.9356 4.6672 38 1 8.9345 -9.1503 6.3047 39 1 3.8246 -2.9058 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273112029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -44.257673 kcal Electronic energy + Delta-G solvation = -21860.140920 eV Core-core repulsion = 18381.525459 eV Total energy + Delta-G solvation = -3478.615461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83686 -40.02850 -38.28991 -35.52326 -34.87465 -34.09998 -32.88950 -31.03143 -30.28883 -29.13538 -28.39126 -24.89242 -23.08569 -22.86743 -21.30441 -20.81880 -20.21027 -18.60668 -17.85308 -17.22598 -16.41885 -16.31425 -15.86870 -15.63878 -15.35992 -14.63066 -14.55348 -14.31085 -14.00784 -13.77827 -13.59442 -13.23990 -13.03761 -12.82299 -12.54227 -12.32246 -12.02304 -11.76011 -11.23885 -11.10783 -10.80714 -10.65374 -10.40932 -10.26668 -9.99169 -9.88899 -9.62343 -9.29621 -8.66087 -8.45843 -8.36301 -7.93878 -6.13131 -4.15950 1.17051 1.36703 2.35440 2.71871 2.95554 3.26151 3.34008 3.34038 3.39166 3.85937 4.34027 4.41588 4.50814 4.84195 4.91590 4.99236 5.09935 5.22068 5.24291 5.35615 5.42951 5.52767 5.60819 6.07516 6.16641 6.25008 6.30886 6.34877 6.40277 6.54831 6.69095 6.84185 7.03381 7.10100 7.17264 7.50274 7.57046 7.85593 7.86079 8.15110 8.27719 8.76674 8.90525 9.49170 10.98546 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.002650 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.478305 B =10563.610727 C =11525.633815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.527 6.527 4 N -0.672 5.672 5 C 0.161 3.839 6 C -0.144 4.144 7 C -0.082 4.082 8 C -0.167 4.167 9 C 0.196 3.804 10 N -0.692 5.692 11 C 0.696 3.304 12 O -0.579 6.579 13 N -0.731 5.731 14 C 0.139 3.861 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.148 4.148 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.412 0.588 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 12.978 -17.313 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.402 6.402 4 N -0.318 5.318 5 C 0.067 3.933 6 C -0.165 4.165 7 C -0.101 4.101 8 C -0.188 4.188 9 C 0.099 3.901 10 N -0.339 5.339 11 C 0.396 3.604 12 O -0.456 6.456 13 N -0.384 5.384 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.171 4.171 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.248 0.752 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.242 0.758 33 H 0.229 0.771 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.911 13.953 -16.690 23.906 hybrid contribution 0.415 -1.315 0.651 1.525 sum -9.496 12.638 -16.040 22.520 Atomic orbital electron populations 1.21928 0.90741 1.05934 1.04661 1.20993 0.90880 0.83133 0.75155 1.90748 1.70618 1.31211 1.47621 1.43584 1.05345 1.09986 1.72838 1.17508 0.82562 0.96932 0.96319 1.21013 0.94840 1.00141 1.00550 1.20742 0.93163 0.97541 0.98640 1.20848 0.99951 0.95322 1.02712 1.17172 0.89874 0.89200 0.93810 1.42742 1.27638 1.41831 1.21725 1.16078 0.83492 0.80675 0.80128 1.90917 1.28207 1.62270 1.64222 1.45589 1.32663 1.35004 1.25194 1.21670 0.99185 0.96981 0.80532 1.19337 0.94531 0.91701 0.96940 1.21073 1.13079 1.17005 1.04816 0.92141 1.25000 0.94862 0.96527 0.97921 1.69961 1.18623 1.25712 1.38992 0.86450 0.78822 0.78806 0.83460 1.19551 1.20924 1.20913 1.20878 0.92572 1.02083 1.01588 0.88969 0.88602 0.89040 0.75218 0.85100 0.85451 0.85649 0.75787 0.77106 0.92531 0.92546 0.95897 0.95894 0.92869 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.32 36.00 0.37 -0.58 16 2 C 0.51 5.28 7.68 -10.99 -0.08 5.20 16 3 O -0.53 -7.66 14.77 5.55 0.08 -7.58 16 4 N -0.67 -6.73 5.34 -9.88 -0.05 -6.78 16 5 C 0.16 2.06 6.27 -83.72 -0.53 1.53 16 6 C -0.14 -1.79 8.65 -39.36 -0.34 -2.13 16 7 C -0.08 -0.89 10.03 -39.64 -0.40 -1.28 16 8 C -0.17 -1.85 9.96 -39.36 -0.39 -2.24 16 9 C 0.20 2.61 6.28 -83.72 -0.53 2.08 16 10 N -0.69 -8.93 5.35 -14.24 -0.08 -9.00 16 11 C 0.70 11.81 8.30 -86.92 -0.72 11.08 16 12 O -0.58 -11.95 14.03 5.29 0.07 -11.87 16 13 N -0.73 -12.33 5.56 -65.22 -0.36 -12.69 16 14 C 0.14 2.88 5.61 -4.04 -0.02 2.86 16 15 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 16 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.15 -2.08 8.57 -39.20 -0.34 -2.42 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.41 2.86 8.82 -40.82 -0.36 2.50 16 29 H 0.13 1.64 6.41 -52.49 -0.34 1.30 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.41 3.82 8.83 -40.82 -0.36 3.46 16 33 H 0.40 5.61 8.49 -40.82 -0.35 5.26 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.14 2.17 6.42 -52.49 -0.34 1.83 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -35.18 338.63 -8.13 -43.31 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.09 Total: 7.20 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.53 Total: 1.24 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.24 Total: -53.53 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.18 -8.13 -43.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273112029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.945 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds