Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21292 * 120.00066 * 2 1 4 4 N 1.34775 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.39924 * 120.00136 * 174.89438 * 4 2 1 6 6 C 1.38948 * 120.03610 * 326.59480 * 5 4 2 7 7 C 1.38136 * 120.06979 * 180.02562 * 6 5 4 8 8 C 1.38187 * 120.13716 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.07480 * 359.97438 * 8 7 6 10 10 N 1.39940 * 120.03639 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99846 * 147.00233 * 10 9 8 12 12 O 1.21588 * 119.99779 * 354.62254 * 11 10 9 13 13 N 1.34770 * 119.99694 * 174.62831 * 11 10 9 14 14 C 1.46505 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47370 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99830 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46868 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46894 * 120.00058 * 20 18 16 23 23 H 1.48492 * 109.46894 * 240.00110 * 20 18 16 24 24 C 1.38733 * 120.03404 * 146.87075 * 5 4 2 25 25 H 1.09006 * 109.47497 * 240.00351 * 1 2 3 26 26 H 1.09004 * 109.47166 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47446 * 120.00500 * 1 2 3 28 28 H 0.97003 * 119.99951 * 354.90232 * 4 2 1 29 29 H 1.07999 * 119.96056 * 0.02562 * 6 5 4 30 30 H 1.07994 * 119.93067 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.96224 * 180.02562 * 8 7 6 32 32 H 0.96994 * 120.00159 * 326.71926 * 10 9 8 33 33 H 0.96998 * 120.00321 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.47195 * 299.99990 * 14 13 11 35 35 H 1.09006 * 109.46639 * 60.00018 * 14 13 11 36 36 H 1.09000 * 109.47723 * 300.00565 * 15 14 13 37 37 H 1.09000 * 109.47061 * 60.00163 * 15 14 13 38 38 H 0.97000 * 119.99920 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07312 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 -0.1073 6 6 4.2166 -0.1975 -0.8657 7 6 5.5938 -0.1996 -0.9730 8 6 6.3386 -1.1676 -0.3266 9 6 5.7043 -2.1415 0.4338 10 7 6.4593 -3.1211 1.0885 11 6 6.0416 -3.6156 2.2707 12 8 5.0629 -3.1430 2.8157 13 7 6.7089 -4.6340 2.8487 14 6 6.2552 -5.1712 4.1339 15 6 7.1795 -6.3118 4.5648 16 6 6.7124 -6.8649 5.8865 17 1 5.8430 -6.4451 6.3706 18 6 7.3951 -7.9068 6.4778 19 7 8.4541 -8.4175 5.8885 20 14 6.8165 -8.5918 8.1166 21 1 5.6121 -7.8485 8.5663 22 1 6.4806 -10.0300 7.9610 23 1 7.8964 -8.4419 9.1247 24 6 4.3205 -2.1462 0.5382 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 1.6987 -2.0056 0.0755 29 1 3.6372 0.5605 -1.3717 30 1 6.0894 0.5568 -1.5634 31 1 7.4152 -1.1663 -0.4122 32 1 7.2812 -3.4470 0.6896 33 1 7.4896 -5.0112 2.4137 34 1 6.2767 -4.3821 4.8855 35 1 5.2375 -5.5478 4.0313 36 1 7.1578 -7.1009 3.8131 37 1 8.1974 -5.9356 4.6672 38 1 8.9345 -9.1503 6.3047 39 1 3.8246 -2.9058 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273112029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -70.047216 kcal Electronic energy + Delta-G solvation = -21861.259238 eV Core-core repulsion = 18381.525459 eV Total energy + Delta-G solvation = -3479.733779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87498 -41.12698 -39.34416 -36.83244 -36.24469 -35.19011 -34.80032 -31.83679 -31.77635 -30.33406 -29.29503 -26.74896 -24.26752 -23.75288 -22.90465 -22.15677 -21.23260 -19.76623 -18.99510 -18.46384 -18.03793 -17.26492 -16.96886 -16.79043 -16.51188 -16.40845 -15.87292 -15.50825 -15.24557 -14.89391 -14.83513 -14.46473 -14.26931 -13.89153 -13.42975 -13.21644 -13.13726 -12.97987 -12.92808 -12.67965 -12.51625 -12.28783 -11.87399 -11.65591 -11.45220 -11.21467 -11.14927 -10.84915 -10.61049 -10.09213 -9.37809 -8.93847 -8.24467 -6.34349 0.24011 0.37146 1.41208 1.42223 1.53412 1.55235 1.58441 1.99864 2.15639 2.41094 2.87982 3.10825 3.23621 3.76576 4.00423 4.21526 4.25551 4.41193 4.43549 4.50462 4.52951 4.56525 4.63631 4.67139 4.85856 5.06490 5.20352 5.25978 5.30663 5.36591 5.45527 5.49394 5.57774 5.59090 5.78388 5.97501 6.07313 6.16505 6.41267 6.79100 6.98153 7.08584 7.35024 7.44671 8.87594 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.002650 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.478305 B =10563.610727 C =11525.633815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.575 6.575 4 N -0.667 5.667 5 C 0.151 3.849 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.158 4.158 9 C 0.175 3.825 10 N -0.672 5.672 11 C 0.698 3.302 12 O -0.617 6.617 13 N -0.724 5.724 14 C 0.160 3.840 15 C 0.023 3.977 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.278 1.278 24 C -0.167 4.167 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.425 0.575 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.425 0.575 33 H 0.410 0.590 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 13.327 -17.962 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.294 3.706 3 O -0.454 6.454 4 N -0.313 5.313 5 C 0.056 3.944 6 C -0.175 4.175 7 C -0.096 4.096 8 C -0.179 4.179 9 C 0.079 3.921 10 N -0.321 5.321 11 C 0.398 3.602 12 O -0.498 6.498 13 N -0.379 5.379 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.190 4.190 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.137 0.863 28 H 0.263 0.737 29 H 0.145 0.855 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.264 0.736 33 H 0.246 0.754 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.154 14.282 -17.394 24.691 hybrid contribution 0.492 -1.374 0.765 1.648 sum -9.662 12.908 -16.629 23.162 Atomic orbital electron populations 1.21958 0.86706 1.06712 1.06799 1.21922 0.92738 0.82251 0.73642 1.90718 1.71926 1.32755 1.49955 1.43662 1.04597 1.10856 1.72218 1.17674 0.83852 0.96693 0.96228 1.21176 0.95813 0.99908 1.00652 1.21131 0.92595 0.97793 0.98087 1.21133 1.01454 0.94072 1.01229 1.17440 0.89830 0.90083 0.94774 1.42429 1.28068 1.41314 1.20258 1.16121 0.82862 0.80320 0.80903 1.90896 1.29900 1.63384 1.65574 1.45225 1.33267 1.35239 1.24149 1.21132 0.97871 0.95429 0.81968 1.19136 0.94333 0.92249 0.95714 1.21486 1.13222 1.17469 1.06165 0.92290 1.25852 0.94925 0.96831 1.01536 1.70056 1.19635 1.26272 1.40624 0.85411 0.78508 0.78194 0.79027 1.18965 1.20214 1.20329 1.20822 0.93330 1.02422 1.02392 0.87187 0.88537 0.86252 0.73686 0.85485 0.82402 0.82644 0.73586 0.75400 0.93718 0.93384 0.97080 0.97217 0.92549 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.32 71.23 0.74 -0.77 16 2 C 0.50 10.23 7.68 87.66 0.67 10.90 16 3 O -0.57 -16.90 14.77 -3.07 -0.05 -16.95 16 4 N -0.67 -13.26 5.34 -303.55 -1.62 -14.88 16 5 C 0.15 3.84 6.27 38.14 0.24 4.08 16 6 C -0.15 -3.72 8.65 22.42 0.19 -3.53 16 7 C -0.08 -1.51 10.03 22.23 0.22 -1.29 16 8 C -0.16 -3.14 9.96 22.41 0.22 -2.91 16 9 C 0.17 4.48 6.28 38.13 0.24 4.72 16 10 N -0.67 -16.57 5.35 -317.23 -1.70 -18.26 16 11 C 0.70 23.49 8.30 179.06 1.49 24.97 16 12 O -0.62 -25.86 14.03 -3.99 -0.06 -25.92 16 13 N -0.72 -24.23 5.56 -478.53 -2.66 -26.89 16 14 C 0.16 6.72 5.61 86.38 0.48 7.21 16 15 C 0.02 1.14 5.09 29.85 0.15 1.29 16 16 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 20 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 C -0.17 -4.72 8.57 22.52 0.19 -4.53 16 25 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.10 0.93 8.12 -2.39 -0.02 0.91 16 27 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.42 5.78 8.82 -92.71 -0.82 4.96 16 29 H 0.13 3.16 6.41 -2.91 -0.02 3.14 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.43 7.12 8.83 -92.71 -0.82 6.30 16 33 H 0.41 11.30 8.49 -92.71 -0.79 10.51 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.12 3.87 6.42 -2.91 -0.02 3.85 16 Total: -1.00 -76.98 338.63 0.45 -76.53 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.32 Total: 23.21 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.54 Total: 11.28 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -5.69 Total: -113.31 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.10 Total: -42.87 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.98 0.45 -76.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273112029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.481 kcal (2) G-P(sol) polarization free energy of solvation -76.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds