Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34895 * 117.00030 * 2 1 4 4 O 1.21620 * 119.99977 * 359.97438 * 3 2 1 5 5 C 1.46490 * 119.99781 * 180.02562 * 3 2 1 6 6 C 1.38002 * 126.25925 * 180.15432 * 5 3 2 7 7 C 1.39795 * 106.96543 * 180.24876 * 6 5 3 8 8 C 1.35490 * 107.84369 * 359.76212 * 7 6 5 9 9 C 1.50697 * 125.50477 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47353 * 264.64032 * 9 8 7 11 11 C 1.46903 * 110.99856 * 75.73048 * 10 9 8 12 12 C 1.50704 * 109.46966 * 190.00161 * 11 10 9 13 13 H 1.08005 * 119.99752 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99910 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46915 * 90.00703 * 16 14 12 18 18 H 1.48503 * 109.46864 * 210.00210 * 16 14 12 19 19 H 1.48494 * 109.47133 * 330.00372 * 16 14 12 20 20 C 1.46904 * 111.00260 * 199.68767 * 10 9 8 21 21 C 1.53000 * 109.47100 * 75.78765 * 20 10 9 22 22 C 1.47198 * 109.46762 * 174.87190 * 21 20 10 23 23 N 9.08300 * 144.79087 * 195.16533 * 2 1 3 24 24 N 1.34959 * 108.98603 * 359.97438 * 8 7 6 25 25 H 0.96999 * 125.63551 * 179.97438 * 24 8 7 26 26 H 1.08997 * 109.47195 * 60.00102 * 1 2 3 27 27 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47103 * 299.99855 * 1 2 3 29 29 H 1.07998 * 126.51597 * 0.02562 * 6 5 3 30 30 H 1.08001 * 126.07438 * 179.72352 * 7 6 5 31 31 H 1.09003 * 109.47391 * 24.64128 * 9 8 7 32 32 H 1.09001 * 109.47089 * 144.64077 * 9 8 7 33 33 H 1.08996 * 109.47170 * 310.00093 * 11 10 9 34 34 H 1.08994 * 109.46811 * 70.00216 * 11 10 9 35 35 H 0.97006 * 120.00399 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47146 * 195.78979 * 20 10 9 37 37 H 1.08998 * 109.46280 * 315.78742 * 20 10 9 38 38 H 1.09000 * 109.46845 * 294.87215 * 21 20 10 39 39 H 1.08999 * 109.46801 * 54.87461 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2842 2.4325 0.0024 7 6 5.6259 2.0402 -0.0053 8 6 5.6625 0.6858 -0.0072 9 6 6.9125 -0.1559 -0.0155 10 7 7.2385 -0.5350 -1.3969 11 6 7.8228 0.5964 -2.1293 12 6 7.9162 0.2525 -3.5936 13 1 7.5750 -0.7102 -3.9450 14 6 8.4360 1.1671 -4.4848 15 7 8.8509 2.3394 -4.0569 16 14 8.5523 0.7404 -6.2997 17 1 7.3027 1.1547 -6.9866 18 1 9.7078 1.4524 -6.9024 19 1 8.7390 -0.7247 -6.4528 20 6 8.1333 -1.6997 -1.4260 21 6 7.3336 -2.9653 -1.1102 22 6 8.2020 -4.1444 -1.2597 23 7 8.8733 -5.0545 -1.3700 24 7 4.3987 0.2124 -0.0005 25 1 4.1460 -0.7241 -0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9109 3.4459 0.0059 30 1 6.4813 2.6996 -0.0096 31 1 7.7381 0.4153 0.4089 32 1 6.7492 -1.0548 0.5790 33 1 7.1921 1.4762 -2.0022 34 1 8.8196 0.8047 -1.7407 35 1 9.2170 2.9828 -4.6838 36 1 8.5802 -1.7899 -2.4161 37 1 8.9200 -1.5719 -0.6825 38 1 6.9627 -2.9146 -0.0865 39 1 6.4920 -3.0443 -1.7982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274806333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = -11.955555 kcal Electronic energy + Delta-G solvation = -22509.112978 eV Core-core repulsion = 19031.898242 eV Total energy + Delta-G solvation = -3477.214736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26027 -39.82943 -37.51915 -36.40101 -36.11334 -32.76125 -31.60015 -30.92285 -29.94792 -28.15927 -26.93162 -25.15458 -23.18448 -22.52618 -20.59497 -20.19152 -19.82700 -18.40839 -17.39283 -16.93401 -16.46622 -16.39504 -15.59045 -15.04558 -14.70275 -14.56806 -13.97717 -13.87714 -13.56773 -13.54617 -13.18555 -12.97765 -12.82087 -12.41554 -12.37654 -12.28181 -12.12287 -11.99056 -11.73002 -11.26329 -11.06456 -10.90632 -10.77687 -10.66456 -10.65222 -10.40500 -9.96197 -9.30375 -8.75706 -8.49226 -7.97700 -7.56431 -6.08617 -4.10144 1.36390 2.63561 2.81365 2.90895 2.92481 3.29538 3.34045 3.34670 3.36494 3.38618 4.10112 4.38945 4.86424 4.93768 4.96149 5.04294 5.12465 5.18285 5.28859 5.32903 5.37871 5.50432 5.54905 5.64356 5.74498 5.83910 6.12365 6.19905 6.27005 6.42649 6.49936 6.97106 7.07733 7.14606 7.19620 7.59584 7.65783 7.70821 7.79026 7.90958 8.02199 8.37191 8.95814 9.54420 11.01941 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.004733 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.895726 B = 5914.936794 C = 7368.583104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.540 3.460 4 O -0.508 6.508 5 C -0.064 4.064 6 C -0.085 4.085 7 C -0.201 4.201 8 C 0.103 3.897 9 C 0.104 3.896 10 N -0.532 5.532 11 C 0.191 3.809 12 C -0.513 4.513 13 H 0.063 0.937 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.064 3.936 21 C -0.027 4.027 22 C 0.217 3.783 23 N -0.453 5.453 24 N -0.514 5.514 25 H 0.420 0.580 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.046 0.954 34 H -0.005 1.005 35 H 0.262 0.738 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 -4.732 11.004 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.386 3.614 4 O -0.397 6.397 5 C -0.174 4.174 6 C -0.112 4.112 7 C -0.225 4.225 8 C -0.018 4.018 9 C -0.024 4.024 10 N -0.256 5.256 11 C 0.067 3.933 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.066 4.066 21 C -0.068 4.068 22 C -0.101 4.101 23 N -0.131 5.131 24 N -0.109 5.109 25 H 0.257 0.743 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.637 -5.908 10.538 16.097 hybrid contribution 0.181 0.167 -0.748 0.788 sum -10.455 -5.741 9.790 15.431 Atomic orbital electron populations 1.23222 0.76063 1.03516 1.02606 1.86567 1.23636 1.33117 1.85025 1.19880 0.87149 0.81478 0.72849 1.90878 1.65572 1.35843 1.47415 1.19069 0.85958 0.88616 1.23722 1.21295 0.92379 0.96618 1.00928 1.20749 0.96888 0.93546 1.11301 1.20406 0.85050 0.94188 1.02144 1.20741 0.91913 0.97110 0.92679 1.62093 1.45424 1.08165 1.09965 1.19862 0.93051 0.87665 0.92768 1.21096 1.40801 1.01534 0.91698 0.91886 1.24929 0.95438 0.94967 0.98881 1.69933 1.41990 1.06438 1.34897 0.86568 0.77618 0.78451 0.85204 1.20628 1.21323 1.19911 1.21927 0.92999 0.88175 1.03519 1.19428 0.96345 0.86664 1.04371 1.29322 0.93783 0.94295 0.92653 1.81193 1.10116 1.12221 1.09524 1.41648 1.05248 1.08474 1.55495 0.74263 0.91801 0.88190 0.91941 0.83552 0.83550 0.92031 0.90789 0.93642 0.98743 0.92840 0.88216 0.94706 0.88396 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.37 -4.41 10.58 -41.03 -0.43 -4.84 16 3 C 0.54 7.86 7.93 34.05 0.27 8.13 16 4 O -0.51 -8.48 16.68 -19.36 -0.32 -8.80 16 5 C -0.06 -0.93 7.10 -81.99 -0.58 -1.52 16 6 C -0.09 -1.30 10.66 -39.09 -0.42 -1.72 16 7 C -0.20 -3.09 9.68 -39.98 -0.39 -3.48 16 8 C 0.10 1.46 6.17 -82.20 -0.51 0.96 16 9 C 0.10 1.38 5.34 -4.98 -0.03 1.35 16 10 N -0.53 -8.82 4.35 -237.51 -1.03 -9.85 16 11 C 0.19 4.27 4.55 -4.97 -0.02 4.25 16 12 C -0.51 -13.03 8.23 -34.44 -0.28 -13.32 16 13 H 0.06 1.58 7.31 -52.48 -0.38 1.19 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 16 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.06 0.93 4.75 -3.82 -0.02 0.91 16 21 C -0.03 -0.29 5.75 -29.52 -0.17 -0.46 16 22 C 0.22 2.88 15.43 -20.75 -0.32 2.56 16 23 N -0.45 -7.26 18.54 42.16 0.78 -6.47 16 24 N -0.51 -6.64 6.07 -5.82 -0.04 -6.67 16 25 H 0.42 4.30 8.96 -40.82 -0.37 3.94 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.06 0.83 8.00 -51.93 -0.42 0.41 16 32 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 33 H 0.05 1.11 6.61 -51.93 -0.34 0.77 16 34 H -0.01 -0.13 8.12 -51.93 -0.42 -0.55 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.10 1.75 6.57 -51.93 -0.34 1.41 16 37 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 38 H 0.10 0.76 6.89 -51.93 -0.36 0.40 16 39 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -31.76 346.00 -6.66 -38.42 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.06 Total: 0.97 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.49 Total: 0.57 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.45 Total: -47.33 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.76 Total: -13.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.76 -6.66 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274806333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.468 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds