Wall clock time and date at job start Tue Mar 31 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34895 * 117.00030 * 2 1 4 4 O 1.21620 * 119.99977 * 359.97438 * 3 2 1 5 5 C 1.46490 * 119.99781 * 180.02562 * 3 2 1 6 6 C 1.38002 * 126.25925 * 180.15432 * 5 3 2 7 7 C 1.39795 * 106.96543 * 180.24876 * 6 5 3 8 8 C 1.35490 * 107.84369 * 359.76212 * 7 6 5 9 9 C 1.50697 * 125.50477 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47353 * 264.64032 * 9 8 7 11 11 C 1.46903 * 110.99856 * 75.73048 * 10 9 8 12 12 C 1.50704 * 109.46966 * 190.00161 * 11 10 9 13 13 H 1.08005 * 119.99752 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99910 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46915 * 90.00703 * 16 14 12 18 18 H 1.48503 * 109.46864 * 210.00210 * 16 14 12 19 19 H 1.48494 * 109.47133 * 330.00372 * 16 14 12 20 20 C 1.46904 * 111.00260 * 199.68767 * 10 9 8 21 21 C 1.53000 * 109.47100 * 75.78765 * 20 10 9 22 22 C 1.47198 * 109.46762 * 174.87190 * 21 20 10 23 23 N 9.08300 * 144.79087 * 195.16533 * 2 1 3 24 24 N 1.34959 * 108.98603 * 359.97438 * 8 7 6 25 25 H 0.96999 * 125.63551 * 179.97438 * 24 8 7 26 26 H 1.08997 * 109.47195 * 60.00102 * 1 2 3 27 27 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47103 * 299.99855 * 1 2 3 29 29 H 1.07998 * 126.51597 * 0.02562 * 6 5 3 30 30 H 1.08001 * 126.07438 * 179.72352 * 7 6 5 31 31 H 1.09003 * 109.47391 * 24.64128 * 9 8 7 32 32 H 1.09001 * 109.47089 * 144.64077 * 9 8 7 33 33 H 1.08996 * 109.47170 * 310.00093 * 11 10 9 34 34 H 1.08994 * 109.46811 * 70.00216 * 11 10 9 35 35 H 0.97006 * 120.00399 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47146 * 195.78979 * 20 10 9 37 37 H 1.08998 * 109.46280 * 315.78742 * 20 10 9 38 38 H 1.09000 * 109.46845 * 294.87215 * 21 20 10 39 39 H 1.08999 * 109.46801 * 54.87461 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2842 2.4325 0.0024 7 6 5.6259 2.0402 -0.0053 8 6 5.6625 0.6858 -0.0072 9 6 6.9125 -0.1559 -0.0155 10 7 7.2385 -0.5350 -1.3969 11 6 7.8228 0.5964 -2.1293 12 6 7.9162 0.2525 -3.5936 13 1 7.5750 -0.7102 -3.9450 14 6 8.4360 1.1671 -4.4848 15 7 8.8509 2.3394 -4.0569 16 14 8.5523 0.7404 -6.2997 17 1 7.3027 1.1547 -6.9866 18 1 9.7078 1.4524 -6.9024 19 1 8.7390 -0.7247 -6.4528 20 6 8.1333 -1.6997 -1.4260 21 6 7.3336 -2.9653 -1.1102 22 6 8.2020 -4.1444 -1.2597 23 7 8.8733 -5.0545 -1.3700 24 7 4.3987 0.2124 -0.0005 25 1 4.1460 -0.7241 -0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9109 3.4459 0.0059 30 1 6.4813 2.6996 -0.0096 31 1 7.7381 0.4153 0.4089 32 1 6.7492 -1.0548 0.5790 33 1 7.1921 1.4762 -2.0022 34 1 8.8196 0.8047 -1.7407 35 1 9.2170 2.9828 -4.6838 36 1 8.5802 -1.7899 -2.4161 37 1 8.9200 -1.5719 -0.6825 38 1 6.9627 -2.9146 -0.0865 39 1 6.4920 -3.0443 -1.7982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274806333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:33 Heat of formation + Delta-G solvation = -32.717952 kcal Electronic energy + Delta-G solvation = -22510.013303 eV Core-core repulsion = 19031.898242 eV Total energy + Delta-G solvation = -3478.115061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37481 -40.89304 -38.76246 -37.46146 -37.31229 -34.68325 -32.70000 -32.05709 -31.24186 -29.31236 -28.21920 -26.36937 -24.79029 -23.64442 -21.89620 -21.39199 -20.96066 -19.48730 -18.55433 -18.29301 -17.92067 -17.40692 -16.80146 -16.38513 -16.27810 -15.63925 -15.16446 -15.03190 -14.78631 -14.70198 -14.28756 -14.16130 -13.95007 -13.92270 -13.55974 -13.54503 -13.31463 -13.14938 -12.99827 -12.77030 -12.54649 -12.37397 -12.18533 -11.81948 -11.80861 -11.77285 -11.50625 -11.15608 -10.51755 -9.88575 -9.17036 -8.94537 -8.11506 -6.17574 0.22913 1.44085 1.45887 1.54022 1.62743 1.69694 1.84061 1.90272 2.18762 2.30426 2.45781 3.05368 3.23701 3.68000 3.96723 4.02884 4.21516 4.29457 4.34503 4.37298 4.40270 4.47146 4.64689 4.71057 4.74326 4.83541 5.07386 5.10594 5.18058 5.20513 5.34447 5.41471 5.48682 5.73556 5.82733 5.97998 6.17031 6.36942 6.60622 6.64643 6.70634 6.73674 6.99247 7.50783 8.98829 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.004733 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.895726 B = 5914.936794 C = 7368.583104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.543 3.457 4 O -0.537 6.537 5 C -0.069 4.069 6 C -0.104 4.104 7 C -0.223 4.223 8 C 0.105 3.895 9 C 0.105 3.895 10 N -0.530 5.530 11 C 0.206 3.794 12 C -0.515 4.515 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.950 3.050 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.063 3.937 21 C -0.013 4.013 22 C 0.242 3.758 23 N -0.505 5.505 24 N -0.496 5.496 25 H 0.435 0.565 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.147 0.853 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.022 0.978 34 H -0.031 1.031 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.144 0.856 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -6.937 11.725 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C 0.391 3.609 4 O -0.427 6.427 5 C -0.180 4.180 6 C -0.130 4.130 7 C -0.247 4.247 8 C -0.017 4.017 9 C -0.023 4.023 10 N -0.254 5.254 11 C 0.080 3.920 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.777 3.223 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.066 4.066 21 C -0.053 4.053 22 C -0.075 4.075 23 N -0.183 5.183 24 N -0.092 5.092 25 H 0.276 0.724 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.040 0.960 34 H -0.014 1.014 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.161 0.839 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.029 -8.176 11.269 18.400 hybrid contribution 0.547 0.841 -0.921 1.361 sum -11.483 -7.336 10.348 17.110 Atomic orbital electron populations 1.23584 0.74016 1.05937 1.02652 1.86552 1.25569 1.31421 1.84332 1.19847 0.87032 0.81830 0.72222 1.90863 1.66126 1.36939 1.48817 1.19120 0.86445 0.88900 1.23559 1.21433 0.92651 0.97283 1.01676 1.20842 0.96809 0.94583 1.12448 1.20480 0.85819 0.93841 1.01582 1.20891 0.91186 0.99181 0.91058 1.61893 1.44959 1.06673 1.11864 1.19439 0.91417 0.89024 0.92132 1.21520 1.39242 1.01201 0.93383 0.91629 1.25690 0.95702 0.95053 1.02716 1.70052 1.43571 1.07464 1.36000 0.85669 0.77311 0.78481 0.80868 1.20540 1.21497 1.19002 1.21863 0.93644 0.89025 1.02081 1.19459 0.95218 0.83168 1.07412 1.29678 0.92833 0.93962 0.91004 1.81229 1.11562 1.14061 1.11478 1.41552 1.04392 1.08962 1.54289 0.72415 0.92177 0.84573 0.91590 0.83537 0.84446 0.92125 0.85804 0.95997 1.01359 0.93097 0.91663 0.93756 0.83871 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -7.87 10.58 -58.09 -0.61 -8.48 16 3 C 0.54 15.16 7.93 69.97 0.55 15.72 16 4 O -0.54 -17.69 16.68 19.44 0.32 -17.36 16 5 C -0.07 -1.96 7.10 40.32 0.29 -1.67 16 6 C -0.10 -3.19 10.66 22.59 0.24 -2.95 16 7 C -0.22 -6.91 9.68 22.01 0.21 -6.69 16 8 C 0.11 2.80 6.17 41.44 0.26 3.05 16 9 C 0.10 2.47 5.34 85.56 0.46 2.92 16 10 N -0.53 -16.52 4.35 -905.35 -3.93 -20.45 16 11 C 0.21 9.28 4.55 85.56 0.39 9.67 16 12 C -0.51 -26.22 8.23 25.60 0.21 -26.01 16 13 H 0.07 3.24 7.31 -2.91 -0.02 3.21 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -53.39 13.29 21.45 0.28 -53.10 16 16 Si 0.95 42.88 29.54 68.60 2.03 44.90 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C 0.06 1.69 4.75 86.30 0.41 2.10 16 21 C -0.01 -0.21 5.75 28.79 0.17 -0.05 16 22 C 0.24 5.73 15.43 89.44 1.38 7.11 16 23 N -0.50 -15.35 18.54 20.01 0.37 -14.98 16 24 N -0.50 -11.57 6.07 -172.32 -1.05 -12.62 16 25 H 0.44 7.24 8.96 -92.71 -0.83 6.41 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.06 1.50 8.00 -2.39 -0.02 1.48 16 32 H 0.12 1.70 6.56 -2.39 -0.02 1.69 16 33 H 0.02 1.09 6.61 -2.39 -0.02 1.08 16 34 H -0.03 -1.56 8.12 -2.39 -0.02 -1.58 16 35 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 36 H 0.06 2.22 6.57 -2.39 -0.02 2.21 16 37 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 38 H 0.14 1.26 6.89 -2.39 -0.02 1.24 16 39 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.25 346.00 3.89 -67.36 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.25 Total: 9.06 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.22 Total: 5.67 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.32 Total: -101.15 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.29 Total: -25.84 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.25 3.89 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274806333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.642 kcal (2) G-P(sol) polarization free energy of solvation -71.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds