Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37102 * 119.99909 * 2 1 4 4 H 1.08002 * 120.00027 * 185.66386 * 3 2 1 5 5 C 1.38951 * 120.00278 * 5.65892 * 3 2 1 6 6 N 1.31415 * 119.99768 * 354.54791 * 5 3 2 7 7 Si 1.86799 * 120.00127 * 174.54773 * 5 3 2 8 8 H 1.48502 * 109.46873 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46961 * 120.00386 * 7 5 3 10 10 H 1.48496 * 109.47049 * 240.00369 * 7 5 3 11 11 C 1.34775 * 119.99949 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00032 * 185.05646 * 11 2 1 13 13 C 1.50705 * 119.99788 * 5.06315 * 11 2 1 14 14 C 1.52997 * 112.84748 * 291.45267 * 13 11 2 15 15 C 1.50707 * 109.47049 * 302.31389 * 14 13 11 16 16 C 1.38264 * 119.98598 * 274.78240 * 15 14 13 17 17 C 1.38230 * 120.04953 * 179.73045 * 16 15 14 18 18 C 1.38214 * 120.02128 * 0.54376 * 17 16 15 19 19 C 1.38436 * 119.97730 * 359.72839 * 18 17 16 20 20 F 1.35102 * 120.02242 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98371 * 95.05914 * 15 14 13 22 22 C 1.53786 * 113.61040 * 160.25908 * 13 11 2 23 23 C 1.53958 * 87.01341 * 220.04707 * 22 13 11 24 24 C 1.53774 * 87.11510 * 25.36351 * 23 22 13 25 25 H 1.09008 * 109.46833 * 60.19471 * 1 2 3 26 26 H 1.08998 * 109.47383 * 300.20107 * 1 2 3 27 27 H 1.08997 * 109.47292 * 180.19513 * 1 2 3 28 28 H 0.96996 * 119.99913 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.47314 * 62.31265 * 14 13 11 30 30 H 1.08997 * 109.47138 * 182.31616 * 14 13 11 31 31 H 1.08004 * 119.97500 * 359.97438 * 16 15 14 32 32 H 1.07994 * 119.98409 * 180.27475 * 17 16 15 33 33 H 1.07999 * 120.00700 * 179.70909 * 18 17 16 34 34 H 1.07989 * 120.01448 * 0.02562 * 21 15 14 35 35 H 1.08998 * 113.61387 * 334.55919 * 22 13 11 36 36 H 1.09004 * 113.61199 * 105.47059 * 22 13 11 37 37 H 1.09007 * 113.53389 * 270.80715 * 23 22 13 38 38 H 1.09001 * 113.74103 * 139.94871 * 23 22 13 39 39 H 1.08998 * 113.61619 * 220.09028 * 24 23 22 40 40 H 1.08998 * 113.61614 * 89.18952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2266 1.1897 -0.0923 5 6 1.4609 2.3878 0.1187 6 7 0.1467 2.3929 0.1230 7 14 2.4017 3.9943 0.2720 8 1 3.8605 3.7184 0.2403 9 1 2.0426 4.8880 -0.8583 10 1 2.0498 4.6534 1.5553 11 6 2.1389 -1.1672 0.0005 12 8 3.3482 -1.1692 0.0931 13 6 1.3897 -2.4698 -0.1141 14 6 0.5484 -2.7823 1.1250 15 6 1.4384 -2.8169 2.3408 16 6 2.1104 -3.9788 2.6723 17 6 2.9314 -4.0105 3.7839 18 6 3.0725 -2.8836 4.5717 19 6 2.3956 -1.7213 4.2439 20 9 2.5332 -0.6192 5.0130 21 6 1.5778 -1.6891 3.1269 22 6 2.2662 -3.6459 -0.5762 23 6 1.0711 -4.0933 -1.4375 24 6 0.6196 -2.6233 -1.4363 25 1 -0.3633 0.5108 -0.8918 26 1 -0.3634 0.5169 0.8881 27 1 -0.3634 -1.0276 0.0035 28 1 -0.3347 3.2309 0.2062 29 1 -0.2110 -2.0108 1.2526 30 1 0.0649 -3.7512 1.0010 31 1 1.9970 -4.8613 2.0600 32 1 3.4594 -4.9173 4.0394 33 1 3.7103 -2.9100 5.4428 34 1 1.0489 -0.7832 2.8705 35 1 3.1347 -3.3403 -1.1597 36 1 2.5159 -4.3445 0.2224 37 1 0.3851 -4.7613 -0.9166 38 1 1.3543 -4.4623 -2.4233 39 1 -0.4579 -2.4976 -1.3311 40 1 1.0371 -2.0376 -2.2553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274940313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = -36.097023 kcal Electronic energy + Delta-G solvation = -24363.437855 eV Core-core repulsion = 20865.256305 eV Total energy + Delta-G solvation = -3498.181550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.92219 -41.78786 -39.68314 -38.45544 -36.63811 -33.78549 -33.29036 -31.45376 -29.46529 -28.02653 -26.81875 -26.41706 -25.07871 -23.64222 -22.57031 -21.49077 -19.37370 -18.94812 -18.42501 -17.41596 -17.34617 -17.13463 -16.67172 -16.64613 -16.15288 -15.99813 -15.53206 -15.16583 -14.97057 -14.48857 -14.25349 -13.95121 -13.68907 -13.35911 -13.30507 -13.21453 -12.90431 -12.82228 -12.62930 -12.60119 -12.39685 -12.22257 -12.03726 -11.83587 -11.78520 -11.30510 -11.02849 -10.98169 -10.06106 -9.84608 -9.82029 -9.56525 -8.23932 -5.88691 0.23461 0.31002 1.28974 1.33340 1.46484 2.10807 2.22435 2.65204 3.08885 3.17586 3.30186 3.60038 3.66851 3.88094 3.91912 3.98935 4.01470 4.12525 4.27614 4.36436 4.45585 4.55794 4.70335 4.72742 4.82726 4.94930 4.97102 5.05014 5.11887 5.16921 5.21691 5.22208 5.25418 5.35125 5.42598 5.43694 5.53766 5.61990 5.64366 6.01982 6.06882 6.51477 7.20557 7.58158 8.12855 8.66251 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.007550 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.755399 B = 3707.526381 C = 5162.698739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.462 5.462 3 C -0.335 4.335 4 H 0.067 0.933 5 C -0.005 4.005 6 N -0.896 5.896 7 Si 0.981 3.019 8 H -0.280 1.280 9 H -0.265 1.265 10 H -0.273 1.273 11 C 0.454 3.546 12 O -0.642 6.642 13 C -0.092 4.092 14 C -0.059 4.059 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.086 4.086 18 C -0.163 4.163 19 C 0.064 3.936 20 F -0.160 7.160 21 C -0.163 4.163 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.269 0.731 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -16.171 3.045 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.180 5.180 3 C -0.463 4.463 4 H 0.085 0.915 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.805 3.195 8 H -0.205 1.205 9 H -0.190 1.190 10 H -0.198 1.198 11 C 0.244 3.756 12 O -0.530 6.530 13 C -0.095 4.095 14 C -0.096 4.096 15 C -0.053 4.053 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.181 4.181 19 C 0.045 3.955 20 F -0.139 7.139 21 C -0.182 4.182 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.165 4.165 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.148 0.852 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.170 0.830 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.187 -15.928 3.122 16.541 hybrid contribution 0.690 2.388 0.252 2.499 sum -2.497 -13.540 3.373 14.175 Atomic orbital electron populations 1.21842 0.79099 0.98729 1.02110 1.43840 1.06821 1.04516 1.62795 1.19671 0.92424 0.84557 1.49669 0.91498 1.25915 0.96745 1.01728 0.96122 1.70267 1.06147 1.27707 1.49584 0.85055 0.77973 0.78008 0.78438 1.20511 1.19044 1.19831 1.20758 0.87469 0.85726 0.81680 1.90448 1.16920 1.87926 1.57720 1.21998 0.98213 0.92437 0.96844 1.20707 0.95400 1.05220 0.88280 1.19823 0.97746 0.92695 0.95045 1.21510 0.96471 0.98080 0.97634 1.21435 0.97135 0.98271 0.93506 1.21395 1.01571 0.91881 1.03285 1.18130 1.01041 0.84232 0.92088 1.91424 1.94880 1.53073 1.74489 1.21091 1.01498 0.99785 0.95854 1.22853 0.96907 0.95453 1.00050 1.22867 0.96711 0.94803 1.00742 1.23005 1.00624 0.98581 0.94286 0.93897 0.93298 0.90723 0.92076 0.90370 0.85247 0.81721 0.80971 0.83006 0.88311 0.92759 0.89332 0.86452 0.90161 0.88888 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.72 7.65 127.77 0.98 6.70 16 2 N -0.46 -24.52 3.03 -658.88 -1.99 -26.51 16 3 C -0.33 -20.03 9.55 84.04 0.80 -19.23 16 4 H 0.07 4.36 7.20 -2.91 -0.02 4.33 16 5 C 0.00 -0.27 5.45 84.93 0.46 0.19 16 6 N -0.90 -48.49 9.45 21.66 0.20 -48.28 16 7 Si 0.98 45.29 29.56 68.60 2.03 47.32 16 8 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 C 0.45 22.45 5.54 87.66 0.49 22.93 16 12 O -0.64 -37.75 15.82 -3.05 -0.05 -37.80 16 13 C -0.09 -3.12 0.29 -52.40 -0.02 -3.13 16 14 C -0.06 -1.67 4.35 29.85 0.13 -1.54 16 15 C -0.05 -1.68 4.58 -19.87 -0.09 -1.77 16 16 C -0.12 -2.91 8.67 22.27 0.19 -2.72 16 17 C -0.09 -1.96 10.04 22.26 0.22 -1.74 16 18 C -0.16 -4.64 10.03 22.31 0.22 -4.42 16 19 C 0.06 2.40 7.30 22.37 0.16 2.56 16 20 F -0.16 -6.49 17.27 44.97 0.78 -5.71 16 21 C -0.16 -6.43 9.16 22.31 0.20 -6.23 16 22 C -0.11 -3.32 6.77 31.18 0.21 -3.11 16 23 C -0.11 -2.33 7.74 31.18 0.24 -2.09 16 24 C -0.13 -3.59 5.97 31.12 0.19 -3.41 16 25 H 0.04 2.08 7.26 -2.38 -0.02 2.07 16 26 H 0.05 2.43 6.83 -2.39 -0.02 2.41 16 27 H 0.07 2.72 2.92 -2.39 -0.01 2.71 16 28 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.08 2.36 5.48 -2.39 -0.01 2.35 16 30 H 0.13 2.36 7.28 -2.39 -0.02 2.34 16 31 H 0.17 2.70 6.98 -2.91 -0.02 2.68 16 32 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.10 4.50 8.06 -2.92 -0.02 4.48 16 35 H 0.05 1.93 7.77 -2.39 -0.02 1.91 16 36 H 0.09 2.14 5.83 -2.39 -0.01 2.12 16 37 H 0.12 1.57 7.60 -2.38 -0.02 1.55 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 2.21 7.33 -2.39 -0.02 2.19 16 40 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 Total: -1.00 -76.09 320.73 6.43 -69.66 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.06 Total: 18.31 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.40 Total: -16.99 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -1.79 Total: -74.79 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.05 Total: -37.80 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.78 Total: -5.71 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -76.09 6.43 -69.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274940313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.562 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds