Wall clock time and date at job start Tue Mar 31 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.24065 * 2 1 4 4 C 1.39585 * 120.62389 * 179.97438 * 3 2 1 5 5 C 1.38219 * 119.97307 * 0.70830 * 4 3 2 6 6 C 1.39288 * 118.81704 * 359.03115 * 5 4 3 7 7 C 1.37811 * 121.05535 * 0.58636 * 6 5 4 8 8 C 1.50696 * 119.99714 * 180.02562 * 7 6 5 9 9 C 1.50048 * 124.74883 * 178.87563 * 5 4 3 10 10 H 1.08999 * 108.66585 * 262.16600 * 9 5 4 11 11 N 1.46900 * 108.56156 * 144.19252 * 9 5 4 12 12 C 1.46895 * 111.00334 * 294.18946 * 11 9 5 13 13 C 1.53001 * 109.47504 * 179.97438 * 12 11 9 14 14 C 1.50692 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08008 * 120.00011 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99801 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46793 * 119.99989 * 18 16 14 21 21 H 1.48503 * 109.47127 * 239.99496 * 18 16 14 22 22 C 1.51880 * 113.55011 * 23.22139 * 9 5 4 23 23 C 1.53524 * 109.05176 * 299.38004 * 22 9 5 24 24 S 1.76453 * 117.72900 * 181.41421 * 4 3 2 25 25 H 1.09000 * 109.47164 * 269.97518 * 1 2 3 26 26 H 1.08993 * 109.47531 * 29.97679 * 1 2 3 27 27 H 1.09004 * 109.47232 * 149.97927 * 1 2 3 28 28 H 1.08001 * 119.68881 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.47334 * 180.55788 * 6 5 4 30 30 H 1.09004 * 109.47140 * 89.99232 * 8 7 6 31 31 H 1.08997 * 109.47317 * 209.99558 * 8 7 6 32 32 H 1.09003 * 109.46716 * 329.99868 * 8 7 6 33 33 H 1.00895 * 110.99889 * 170.23261 * 11 9 5 34 34 H 1.09004 * 109.47245 * 300.00304 * 12 11 9 35 35 H 1.09004 * 109.47187 * 59.99732 * 12 11 9 36 36 H 1.08996 * 109.46867 * 300.00409 * 13 12 11 37 37 H 1.08995 * 109.46495 * 59.99783 * 13 12 11 38 38 H 0.97004 * 120.00161 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.55833 * 59.27812 * 22 9 5 40 40 H 1.09002 * 109.55287 * 179.48475 * 22 9 5 41 41 H 1.08999 * 109.88780 * 192.10449 * 23 22 9 42 42 H 1.09000 * 109.89034 * 313.19999 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1904 0.0000 4 6 3.5968 1.1997 0.0005 5 6 4.2953 0.0071 -0.0137 6 6 3.5817 -1.1891 -0.0078 7 6 2.2036 -1.1947 -0.0002 8 6 1.4555 -2.5029 0.0066 9 6 5.7912 -0.1076 -0.0389 10 1 6.1112 -0.2724 -1.0677 11 7 6.1845 -1.2713 0.7669 12 6 5.8579 -1.0650 2.1841 13 6 6.2808 -2.2953 2.9894 14 6 5.9452 -2.0839 4.4431 15 1 5.4774 -1.1638 4.7611 16 6 6.2362 -3.0647 5.3675 17 7 6.8062 -4.1848 4.9805 18 14 5.8208 -2.8022 7.1698 19 1 5.1892 -1.4695 7.3433 20 1 4.8785 -3.8583 7.6194 21 1 7.0639 -2.8707 7.9794 22 6 6.5031 1.1205 0.5011 23 6 6.1281 2.3357 -0.3589 24 16 4.4073 2.7666 0.0390 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6598 2.1250 -0.0004 29 1 4.1168 -2.1271 -0.0097 30 1 1.2810 -2.8162 1.0360 31 1 0.4998 -2.3776 -0.5021 32 1 2.0450 -3.2611 -0.5089 33 1 7.1648 -1.4786 0.6482 34 1 6.3879 -0.1877 2.5552 35 1 4.7839 -0.9127 2.2911 36 1 5.7505 -3.1723 2.6182 37 1 7.3547 -2.4479 2.8824 38 1 7.0113 -4.8746 5.6308 39 1 6.1976 1.2953 1.5326 40 1 7.5811 0.9642 0.4613 41 1 6.7861 3.1727 -0.1251 42 1 6.2108 2.0819 -1.4157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275350947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:06 Heat of formation + Delta-G solvation = 7.714339 kcal Electronic energy + Delta-G solvation = -21219.148361 eV Core-core repulsion = 18289.079791 eV Total energy + Delta-G solvation = -2930.068571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85979 -37.44827 -33.93728 -32.72424 -32.23111 -31.82940 -29.38251 -27.48908 -26.59929 -25.10081 -23.67795 -22.07723 -21.90641 -20.82754 -19.34413 -17.06006 -16.41632 -16.05331 -15.49983 -15.14580 -14.62571 -14.39499 -14.24845 -14.07302 -13.81715 -13.45274 -12.99646 -12.86177 -12.69877 -12.58894 -12.33287 -12.12566 -12.05822 -11.99578 -11.68226 -11.27422 -11.03578 -11.00582 -10.88092 -10.53413 -10.43295 -10.06849 -9.98615 -9.40893 -9.18762 -9.14462 -8.39443 -8.32497 -7.90995 -7.23945 -6.00558 -4.02557 1.34845 1.55981 1.65057 2.43542 3.30690 3.38269 3.42983 3.78416 4.40270 4.55201 4.68550 4.70936 4.91040 4.96902 5.06848 5.18627 5.21779 5.35832 5.40381 5.44729 5.51607 5.55848 5.63008 5.71652 5.80967 5.89804 5.93302 5.94947 6.07202 6.23481 6.32154 6.37729 6.42425 6.44471 6.66527 6.85507 6.98953 7.16830 7.38574 7.69409 7.77769 7.91143 8.05354 8.43299 9.04658 9.61430 11.10872 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004995 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.546757 B = 5603.833967 C = 6590.620852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.107 4.107 4 C -0.075 4.075 5 C -0.073 4.073 6 C -0.068 4.068 7 C -0.094 4.094 8 C -0.114 4.114 9 C 0.124 3.876 10 H 0.084 0.916 11 N -0.680 5.680 12 C 0.062 3.938 13 C 0.027 3.973 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.159 4.159 23 C -0.095 4.095 24 S -0.141 6.141 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.012 0.988 38 H 0.260 0.740 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 10.080 -14.050 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.187 4.187 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.171 4.171 9 C 0.013 3.987 10 H 0.102 0.898 11 N -0.309 5.309 12 C -0.066 4.066 13 C -0.010 4.010 14 C -0.557 4.557 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.200 4.200 23 C -0.244 4.244 24 S 0.100 5.900 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.000 10.717 -13.896 19.286 hybrid contribution 1.116 -0.435 1.164 1.671 sum -6.884 10.282 -12.732 17.754 Atomic orbital electron populations 1.20814 0.91265 1.02538 1.02382 1.19554 0.95681 0.92315 1.00262 1.20568 0.91517 0.97735 1.03155 1.21191 0.96153 0.94934 1.06464 1.19416 0.94667 0.91990 1.01801 1.21267 0.92691 0.98576 0.96294 1.19731 0.93911 0.94821 1.01109 1.20829 0.99586 0.94036 1.02637 1.20059 0.90609 0.89796 0.98212 0.89829 1.60792 1.24371 1.35180 1.10556 1.22244 1.00163 0.99536 0.84658 1.19049 0.96407 0.92137 0.93422 1.21194 1.39770 1.02200 0.92570 0.92819 1.24978 0.95223 0.95181 0.98865 1.69976 1.42541 1.06649 1.34128 0.86570 0.78095 0.78232 0.85339 1.19751 1.20950 1.21012 1.22456 1.01629 0.94696 1.01193 1.23699 0.95134 1.02343 1.03222 1.85323 1.06229 1.09283 1.89136 0.91125 0.91883 0.91123 0.86120 0.84121 0.90920 0.91618 0.91533 0.84085 0.96201 0.92039 0.95779 0.96927 0.93078 0.89358 0.90054 0.87439 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.62 36.01 0.35 -0.81 16 2 C -0.08 -1.03 5.87 -104.77 -0.62 -1.65 16 3 C -0.11 -1.52 9.32 -39.24 -0.37 -1.88 16 4 C -0.07 -1.13 6.05 -39.09 -0.24 -1.37 16 5 C -0.07 -1.14 4.64 -104.55 -0.49 -1.62 16 6 C -0.07 -1.09 7.92 -39.35 -0.31 -1.41 16 7 C -0.09 -1.35 5.87 -104.76 -0.61 -1.97 16 8 C -0.11 -1.38 9.61 36.00 0.35 -1.03 16 9 C 0.12 1.79 2.67 -69.75 -0.19 1.60 16 10 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 11 N -0.68 -11.47 5.13 -108.90 -0.56 -12.03 16 12 C 0.06 1.29 4.78 -3.83 -0.02 1.27 16 13 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 C -0.16 -2.09 4.71 -27.03 -0.13 -2.22 16 23 C -0.09 -1.07 6.54 37.43 0.24 -0.82 16 24 S -0.14 -1.90 21.99 -107.50 -2.36 -4.27 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.07 0.63 5.98 -51.93 -0.31 0.32 16 28 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 29 H 0.14 2.37 7.23 -52.49 -0.38 1.99 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.64 5.96 -51.93 -0.31 0.34 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.34 5.40 8.81 -39.29 -0.35 5.05 16 34 H 0.02 0.41 6.24 -51.93 -0.32 0.09 16 35 H 0.06 1.38 6.68 -51.93 -0.35 1.03 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.09 1.38 6.26 -51.93 -0.32 1.06 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -30.53 341.18 -11.17 -41.70 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.52 Total: 3.61 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.58 Total: -24.85 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.18 Total: -38.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.36 Total: -4.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.53 -11.17 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275350947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.419 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds