Wall clock time and date at job start Tue Mar 31 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.24065 * 2 1 4 4 C 1.39585 * 120.62389 * 179.97438 * 3 2 1 5 5 C 1.38219 * 119.97307 * 0.70830 * 4 3 2 6 6 C 1.39288 * 118.81704 * 359.03115 * 5 4 3 7 7 C 1.37811 * 121.05535 * 0.58636 * 6 5 4 8 8 C 1.50696 * 119.99714 * 180.02562 * 7 6 5 9 9 C 1.50048 * 124.74883 * 178.87563 * 5 4 3 10 10 H 1.08999 * 108.66585 * 262.16600 * 9 5 4 11 11 N 1.46900 * 108.56156 * 144.19252 * 9 5 4 12 12 C 1.46895 * 111.00334 * 294.18946 * 11 9 5 13 13 C 1.53001 * 109.47504 * 179.97438 * 12 11 9 14 14 C 1.50692 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08008 * 120.00011 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99801 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46793 * 119.99989 * 18 16 14 21 21 H 1.48503 * 109.47127 * 239.99496 * 18 16 14 22 22 C 1.51880 * 113.55011 * 23.22139 * 9 5 4 23 23 C 1.53524 * 109.05176 * 299.38004 * 22 9 5 24 24 S 1.76453 * 117.72900 * 181.41421 * 4 3 2 25 25 H 1.09000 * 109.47164 * 269.97518 * 1 2 3 26 26 H 1.08993 * 109.47531 * 29.97679 * 1 2 3 27 27 H 1.09004 * 109.47232 * 149.97927 * 1 2 3 28 28 H 1.08001 * 119.68881 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.47334 * 180.55788 * 6 5 4 30 30 H 1.09004 * 109.47140 * 89.99232 * 8 7 6 31 31 H 1.08997 * 109.47317 * 209.99558 * 8 7 6 32 32 H 1.09003 * 109.46716 * 329.99868 * 8 7 6 33 33 H 1.00895 * 110.99889 * 170.23261 * 11 9 5 34 34 H 1.09004 * 109.47245 * 300.00304 * 12 11 9 35 35 H 1.09004 * 109.47187 * 59.99732 * 12 11 9 36 36 H 1.08996 * 109.46867 * 300.00409 * 13 12 11 37 37 H 1.08995 * 109.46495 * 59.99783 * 13 12 11 38 38 H 0.97004 * 120.00161 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.55833 * 59.27812 * 22 9 5 40 40 H 1.09002 * 109.55287 * 179.48475 * 22 9 5 41 41 H 1.08999 * 109.88780 * 192.10449 * 23 22 9 42 42 H 1.09000 * 109.89034 * 313.19999 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1904 0.0000 4 6 3.5968 1.1997 0.0005 5 6 4.2953 0.0071 -0.0137 6 6 3.5817 -1.1891 -0.0078 7 6 2.2036 -1.1947 -0.0002 8 6 1.4555 -2.5029 0.0066 9 6 5.7912 -0.1076 -0.0389 10 1 6.1112 -0.2724 -1.0677 11 7 6.1845 -1.2713 0.7669 12 6 5.8579 -1.0650 2.1841 13 6 6.2808 -2.2953 2.9894 14 6 5.9452 -2.0839 4.4431 15 1 5.4774 -1.1638 4.7611 16 6 6.2362 -3.0647 5.3675 17 7 6.8062 -4.1848 4.9805 18 14 5.8208 -2.8022 7.1698 19 1 5.1892 -1.4695 7.3433 20 1 4.8785 -3.8583 7.6194 21 1 7.0639 -2.8707 7.9794 22 6 6.5031 1.1205 0.5011 23 6 6.1281 2.3357 -0.3589 24 16 4.4073 2.7666 0.0390 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6598 2.1250 -0.0004 29 1 4.1168 -2.1271 -0.0097 30 1 1.2810 -2.8162 1.0360 31 1 0.4998 -2.3776 -0.5021 32 1 2.0450 -3.2611 -0.5089 33 1 7.1648 -1.4786 0.6482 34 1 6.3879 -0.1877 2.5552 35 1 4.7839 -0.9127 2.2911 36 1 5.7505 -3.1723 2.6182 37 1 7.3547 -2.4479 2.8824 38 1 7.0113 -4.8746 5.6308 39 1 6.1976 1.2953 1.5326 40 1 7.5811 0.9642 0.4613 41 1 6.7861 3.1727 -0.1251 42 1 6.2108 2.0819 -1.4157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275350947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:06 Heat of formation + Delta-G solvation = -8.618502 kcal Electronic energy + Delta-G solvation = -21219.856607 eV Core-core repulsion = 18289.079791 eV Total energy + Delta-G solvation = -2930.776816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99375 -38.67528 -35.73201 -34.23800 -33.45203 -32.95593 -31.09276 -28.62259 -27.70842 -26.65713 -25.11844 -23.33934 -23.05648 -22.48427 -20.53370 -18.56297 -18.12880 -17.32299 -16.75484 -16.43983 -16.27962 -15.83414 -15.39509 -15.11296 -15.08272 -14.65786 -14.49103 -14.12827 -13.88500 -13.60021 -13.53267 -13.36814 -13.31710 -13.25931 -13.05500 -12.86371 -12.55424 -12.47702 -12.18829 -12.08906 -11.91816 -11.49415 -11.43161 -11.26012 -11.06338 -10.58747 -10.27388 -9.47545 -9.33089 -8.29829 -8.22416 -6.33150 0.23986 0.42835 0.63619 1.37134 1.37804 1.41748 1.50888 2.38127 2.66453 3.11022 3.23270 3.59430 3.69748 3.89050 3.95271 4.03201 4.15923 4.28379 4.36177 4.40349 4.52414 4.55593 4.60349 4.64880 4.72630 4.72973 4.82870 4.89925 4.97258 5.04762 5.06137 5.11229 5.21816 5.27999 5.34144 5.41972 5.53916 5.66221 5.75588 5.77134 6.06546 6.08899 6.23515 6.51999 6.83239 7.35898 8.89585 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004995 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.546757 B = 5603.833967 C = 6590.620852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.117 4.117 4 C -0.089 4.089 5 C -0.090 4.090 6 C -0.090 4.090 7 C -0.106 4.106 8 C -0.113 4.113 9 C 0.126 3.874 10 H 0.104 0.896 11 N -0.680 5.680 12 C 0.091 3.909 13 C 0.036 3.964 14 C -0.542 4.542 15 H 0.052 0.948 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.154 4.154 23 C -0.085 4.085 24 S -0.152 6.152 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.348 0.652 34 H 0.021 0.979 35 H 0.043 0.957 36 H -0.006 1.006 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 11.506 -14.288 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.202 4.202 5 C -0.096 4.096 6 C -0.111 4.111 7 C -0.108 4.108 8 C -0.169 4.169 9 C 0.016 3.984 10 H 0.121 0.879 11 N -0.311 5.311 12 C -0.038 4.038 13 C -0.001 4.001 14 C -0.580 4.580 15 H 0.070 0.930 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.785 3.215 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.195 4.195 23 C -0.233 4.233 24 S 0.090 5.910 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.149 0.851 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.669 12.153 -14.152 20.570 hybrid contribution 1.325 -0.888 1.180 1.984 sum -7.344 11.265 -12.972 18.684 Atomic orbital electron populations 1.20880 0.88713 1.04097 1.03091 1.19952 0.97563 0.91633 0.98875 1.20893 0.91501 0.98693 1.02864 1.21415 0.96897 0.95437 1.06422 1.19565 0.95243 0.92202 1.02617 1.21282 0.93682 0.98149 0.97943 1.20045 0.93638 0.96331 1.00820 1.20858 1.00593 0.92933 1.02497 1.20153 0.90362 0.89328 0.98537 0.87876 1.60615 1.24948 1.37172 1.08320 1.21692 0.98724 0.96904 0.86468 1.18875 0.94723 0.93152 0.93366 1.21563 1.40036 1.02343 0.94104 0.93014 1.25877 0.94847 0.94752 1.03760 1.70092 1.43306 1.07514 1.35924 0.85470 0.78210 0.78443 0.79381 1.19048 1.20191 1.20004 1.22350 1.02371 0.94900 0.99840 1.23778 0.93638 1.02158 1.03772 1.85299 1.08004 1.08456 1.89257 0.90665 0.90251 0.89699 0.84672 0.85901 0.91643 0.89023 0.91587 0.83277 0.96136 0.93805 0.98788 0.98698 0.92693 0.92066 0.88297 0.85056 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.62 71.24 0.68 -1.34 16 2 C -0.08 -2.04 5.87 -19.96 -0.12 -2.16 16 3 C -0.12 -3.21 9.32 22.49 0.21 -3.00 16 4 C -0.09 -2.65 6.05 22.59 0.14 -2.52 16 5 C -0.09 -2.83 4.64 -19.82 -0.09 -2.92 16 6 C -0.09 -2.98 7.92 22.42 0.18 -2.80 16 7 C -0.11 -3.07 5.87 -19.95 -0.12 -3.19 16 8 C -0.11 -2.67 9.61 71.23 0.68 -1.98 16 9 C 0.13 3.57 2.67 43.60 0.12 3.69 16 10 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 11 N -0.68 -23.36 5.13 -498.45 -2.56 -25.92 16 12 C 0.09 3.90 4.78 86.30 0.41 4.31 16 13 C 0.04 1.95 5.23 29.85 0.16 2.10 16 14 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 16 C 0.01 0.34 5.46 84.66 0.46 0.80 16 17 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 18 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 C -0.15 -3.84 4.71 30.40 0.14 -3.70 16 23 C -0.08 -1.70 6.54 72.16 0.47 -1.23 16 24 S -0.15 -3.88 21.99 -56.49 -1.24 -5.12 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.08 1.29 5.98 -2.39 -0.01 1.27 16 28 H 0.14 3.21 8.05 -2.91 -0.02 3.19 16 29 H 0.12 4.37 7.23 -2.91 -0.02 4.35 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.09 1.64 5.96 -2.39 -0.01 1.63 16 32 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.35 11.08 8.81 -89.70 -0.79 10.29 16 34 H 0.02 0.88 6.24 -2.38 -0.01 0.86 16 35 H 0.04 2.03 6.68 -2.38 -0.02 2.02 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.06 1.88 6.26 -2.39 -0.01 1.87 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.11 1.82 8.08 -2.39 -0.02 1.80 16 Total: -1.00 -66.90 341.18 2.30 -64.61 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.23 Total: 21.17 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.56 Total: -45.26 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.27 Total: -82.37 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.24 Total: -5.12 kcal Total: -66.90 2.30 -64.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275350947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.988 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds