Wall clock time and date at job start Tue Mar 31 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99837 * 2 1 4 4 C 1.50699 * 109.47153 * 269.99700 * 3 2 1 5 5 H 1.07998 * 119.99990 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00514 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99793 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00621 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46743 * 59.99985 * 8 6 4 10 10 H 1.48496 * 109.47513 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47020 * 300.00006 * 8 6 4 12 12 C 1.34775 * 120.00208 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00326 * 174.70619 * 12 2 1 14 14 C 1.50700 * 119.99589 * 354.70083 * 12 2 1 15 15 C 1.53001 * 115.55084 * 74.87923 * 14 12 2 16 16 C 1.50700 * 109.47094 * 39.39053 * 15 14 12 17 17 C 1.38252 * 119.97289 * 86.43792 * 16 15 14 18 18 C 1.38196 * 120.02065 * 180.02562 * 17 16 15 19 19 C 1.38459 * 119.97902 * 0.23002 * 18 17 16 20 20 F 1.35099 * 120.02915 * 179.73176 * 19 18 17 21 21 C 1.38466 * 119.94570 * 359.49507 * 19 18 17 22 22 C 1.38197 * 119.97188 * 0.53033 * 21 19 18 23 23 C 1.53007 * 117.51704 * 220.57935 * 14 12 2 24 24 C 1.52997 * 59.99887 * 107.48323 * 23 14 12 25 25 H 1.09001 * 109.47161 * 234.75743 * 1 2 3 26 26 H 1.08997 * 109.46930 * 354.76151 * 1 2 3 27 27 H 1.08996 * 109.46751 * 114.75685 * 1 2 3 28 28 H 1.09000 * 109.47469 * 29.99867 * 3 2 1 29 29 H 1.09000 * 109.47433 * 150.00066 * 3 2 1 30 30 H 0.96997 * 120.00491 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.46893 * 279.38787 * 15 14 12 32 32 H 1.09002 * 109.47169 * 159.38652 * 15 14 12 33 33 H 1.07996 * 119.98795 * 0.02562 * 17 16 15 34 34 H 1.08004 * 120.00845 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.01360 * 180.25966 * 21 19 18 36 36 H 1.07999 * 119.98865 * 179.74908 * 22 21 19 37 37 H 1.08999 * 117.49924 * 214.97427 * 23 14 12 38 38 H 1.08998 * 117.49719 * 359.97438 * 23 14 12 39 39 H 1.09002 * 117.49655 * 252.50482 * 24 23 14 40 40 H 1.09003 * 117.51628 * 107.48569 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4377 3.4170 -3.4340 9 1 2.1399 3.5953 -4.1333 10 1 4.1802 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1347 12 6 2.1390 -1.1672 0.0005 13 8 3.3478 -1.1695 -0.0964 14 6 1.3902 -2.4694 0.1216 15 6 0.6446 -2.9213 -1.1356 16 6 1.4821 -2.6202 -2.3518 17 6 2.4294 -3.5312 -2.7809 18 6 3.1982 -3.2558 -3.8957 19 6 3.0229 -2.0651 -4.5802 20 9 3.7778 -1.7925 -5.6669 21 6 2.0699 -1.1560 -4.1528 22 6 1.3026 -1.4333 -3.0374 23 6 2.0003 -3.5556 1.0100 24 6 0.7559 -2.7964 1.4750 25 1 -0.3633 -0.5930 0.8393 26 1 -0.3633 1.0234 0.0938 27 1 -0.3633 -0.4303 -0.9332 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0316 4.4431 -0.8504 31 1 -0.3038 -2.3890 -1.2066 32 1 0.4562 -3.9935 -1.0807 33 1 2.5685 -4.4583 -2.2447 34 1 3.9385 -3.9674 -4.2306 35 1 1.9294 -0.2287 -4.6883 36 1 0.5620 -0.7226 -2.7014 37 1 1.8704 -4.5921 0.6987 38 1 2.9435 -3.3285 1.5067 39 1 0.8805 -2.0699 2.2780 40 1 -0.1927 -3.3332 1.4697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275804530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:34 Heat of formation + Delta-G solvation = -51.285868 kcal Electronic energy + Delta-G solvation = -24102.481016 eV Core-core repulsion = 20603.640828 eV Total energy + Delta-G solvation = -3498.840188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93636 -41.33752 -39.70618 -37.64726 -36.49992 -34.61923 -32.99768 -32.06271 -29.91403 -27.84750 -27.34946 -25.62519 -24.02743 -23.23875 -23.05926 -22.27698 -19.45364 -18.75273 -18.54750 -17.61980 -17.38071 -17.08610 -16.65003 -16.46731 -16.17299 -16.10097 -15.41737 -14.90755 -14.87994 -14.57142 -14.39162 -14.10326 -13.83987 -13.50502 -13.45537 -13.25796 -13.09254 -12.91386 -12.79400 -12.68961 -12.49867 -12.29165 -12.17284 -11.93599 -11.67114 -11.40814 -10.82678 -10.63376 -10.38522 -10.00406 -9.47656 -9.33105 -8.21355 -6.32769 0.17253 0.32846 1.29668 1.34642 1.40106 1.91819 2.30449 2.44811 2.61061 2.88180 3.08577 3.31555 3.63659 3.77355 3.82290 3.91758 3.97646 4.05676 4.31204 4.35526 4.40565 4.52595 4.71989 4.80135 4.82379 4.88182 4.92348 4.99432 5.01866 5.05546 5.10617 5.17899 5.20839 5.27231 5.32011 5.33606 5.59577 5.62823 5.90548 5.98424 6.09927 6.75560 6.88946 7.32519 7.60185 8.85484 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.008402 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.182755 B = 3331.650436 C = 5129.128423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.602 5.602 3 C 0.262 3.738 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.930 5.930 8 Si 0.947 3.053 9 H -0.256 1.256 10 H -0.280 1.280 11 H -0.285 1.285 12 C 0.537 3.463 13 O -0.599 6.599 14 C -0.162 4.162 15 C -0.027 4.027 16 C -0.097 4.097 17 C -0.079 4.079 18 C -0.158 4.158 19 C 0.064 3.936 20 F -0.155 7.155 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.148 4.148 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.023 0.977 29 H -0.011 1.011 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 -17.523 -0.191 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.140 3.860 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.571 5.571 8 Si 0.773 3.227 9 H -0.180 1.180 10 H -0.205 1.205 11 H -0.212 1.212 12 C 0.326 3.674 13 O -0.480 6.480 14 C -0.165 4.165 15 C -0.064 4.064 16 C -0.097 4.097 17 C -0.096 4.096 18 C -0.177 4.177 19 C 0.045 3.955 20 F -0.134 7.134 21 C -0.188 4.188 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.172 4.172 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.181 0.819 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.118 -17.300 -0.236 20.566 hybrid contribution 1.247 1.539 -1.207 2.320 sum -9.871 -15.761 -1.444 18.653 Atomic orbital electron populations 1.21971 0.78206 1.03396 1.02626 1.48021 1.08050 1.05922 1.71230 1.18741 0.90763 0.80571 0.95915 1.21725 1.35608 1.05751 0.93267 0.92043 1.25707 0.95484 0.96880 1.00809 1.70033 1.39527 1.14930 1.32611 0.85769 0.79028 0.77301 0.80645 1.18044 1.20463 1.21162 1.20186 0.86731 0.85299 0.75224 1.90636 1.17375 1.87887 1.52053 1.21363 1.05673 0.93908 0.95545 1.20224 0.96191 1.04228 0.85775 1.20186 0.98318 0.93969 0.97215 1.21221 0.93435 1.00551 0.94437 1.21365 1.02610 0.96108 0.97619 1.18035 0.93644 0.96965 0.86821 1.91428 1.74920 1.94312 1.52744 1.21221 0.97949 0.99523 1.00089 1.21058 0.98984 0.96669 0.93331 1.23153 0.97301 0.97298 1.00774 1.23228 0.98936 1.02188 0.92855 0.89452 0.91252 0.91385 0.95873 0.99314 0.92697 0.88156 0.85832 0.81861 0.82929 0.86184 0.85143 0.84495 0.91194 0.89681 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 9.55 127.77 1.22 3.49 16 2 N -0.60 -24.71 2.86 -851.15 -2.43 -27.14 16 3 C 0.26 14.09 5.11 85.63 0.44 14.53 16 4 C -0.52 -30.14 9.39 25.60 0.24 -29.90 16 5 H 0.06 3.44 7.23 -2.91 -0.02 3.42 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 8 Si 0.95 46.52 29.54 68.60 2.03 48.55 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 12 C 0.54 21.73 5.31 87.66 0.47 22.19 16 13 O -0.60 -31.74 16.57 -3.02 -0.05 -31.79 16 14 C -0.16 -4.11 1.25 -52.93 -0.07 -4.17 16 15 C -0.03 -0.53 5.08 29.85 0.15 -0.38 16 16 C -0.10 -2.67 4.33 -19.86 -0.09 -2.75 16 17 C -0.08 -2.05 9.71 22.26 0.22 -1.83 16 18 C -0.16 -4.67 10.03 22.31 0.22 -4.45 16 19 C 0.06 2.30 7.30 22.38 0.16 2.46 16 20 F -0.16 -5.74 17.27 44.97 0.78 -4.96 16 21 C -0.17 -6.24 10.03 22.31 0.22 -6.02 16 22 C -0.08 -2.74 8.52 22.26 0.19 -2.55 16 23 C -0.15 -3.13 9.75 30.60 0.30 -2.83 16 24 C -0.14 -2.39 8.66 30.59 0.27 -2.12 16 25 H 0.09 1.83 6.70 -2.39 -0.02 1.81 16 26 H 0.07 2.03 7.77 -2.39 -0.02 2.01 16 27 H 0.07 1.64 5.17 -2.39 -0.01 1.63 16 28 H 0.02 1.26 7.88 -2.39 -0.02 1.25 16 29 H -0.01 -0.71 7.50 -2.39 -0.02 -0.73 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.10 1.59 6.53 -2.39 -0.02 1.57 16 32 H 0.12 1.41 7.91 -2.39 -0.02 1.39 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.13 4.21 6.61 -2.91 -0.02 4.19 16 37 H 0.14 1.84 8.08 -2.39 -0.02 1.82 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.11 338.59 6.06 -74.05 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.04 Total: 11.72 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.41 Total: -13.30 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.15 Total: -84.27 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.79 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.78 Total: -4.96 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -80.11 6.06 -74.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275804530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.767 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds