Wall clock time and date at job start Tue Mar 31 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99963 * 2 1 4 4 H 1.48501 * 109.47099 * 269.99944 * 3 2 1 5 5 H 1.48499 * 109.47412 * 30.00274 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.00132 * 3 2 1 7 7 C 1.37868 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00253 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47637 * 304.99866 * 10 9 7 12 12 N 1.46897 * 109.47281 * 65.00480 * 10 9 7 13 13 C 1.46904 * 111.00117 * 204.99841 * 12 10 9 14 14 C 1.53004 * 109.47210 * 179.97438 * 13 12 10 15 15 H 1.09005 * 108.82737 * 54.29683 * 14 13 12 16 16 C 1.52327 * 108.86860 * 172.82965 * 14 13 12 17 17 C 1.54255 * 112.58786 * 120.82038 * 16 14 13 18 18 S 1.83959 * 102.58393 * 24.52685 * 17 16 14 19 19 C 1.54257 * 108.86617 * 295.77009 * 14 13 12 20 20 C 1.50707 * 109.47073 * 185.00057 * 10 9 7 21 21 C 1.38238 * 119.99792 * 100.00219 * 20 10 9 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 10 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 279.98155 * 20 10 9 26 26 H 0.97001 * 119.99689 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46520 * 60.00400 * 9 7 2 28 28 H 1.08997 * 109.47067 * 300.00322 * 9 7 2 29 29 H 1.00896 * 110.99740 * 328.94941 * 12 10 9 30 30 H 1.09001 * 109.47145 * 299.99841 * 13 12 10 31 31 H 1.08996 * 109.46836 * 59.99833 * 13 12 10 32 32 H 1.08999 * 108.86943 * 241.63809 * 16 14 13 33 33 H 1.09005 * 108.86816 * 359.97438 * 16 14 13 34 34 H 1.08999 * 110.79032 * 142.80531 * 17 16 14 35 35 H 1.09006 * 110.79028 * 266.25383 * 17 16 14 36 36 H 1.09004 * 110.78666 * 332.92467 * 19 14 13 37 37 H 1.08998 * 110.79191 * 96.37707 * 19 14 13 38 38 H 1.08005 * 120.00068 * 359.97438 * 21 20 10 39 39 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 42 42 H 1.07999 * 119.99968 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9293 -3.5552 -0.8423 12 7 3.0082 -3.6539 1.2547 13 6 4.3094 -4.3142 1.0841 14 6 5.0735 -4.2855 2.4094 15 1 4.4458 -4.7211 3.1869 16 6 6.3367 -5.1249 2.2680 17 6 7.6211 -4.3112 2.5282 18 16 7.0180 -2.9417 3.5982 19 6 5.3782 -2.8189 2.7778 20 6 1.4958 -4.9637 -0.1244 21 6 1.4101 -5.5980 -1.3497 22 6 0.7231 -6.7921 -1.4631 23 6 0.1224 -7.3523 -0.3513 24 6 0.2035 -6.7154 0.8728 25 6 0.8944 -5.5235 0.9873 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 3.1227 -2.7136 1.6022 30 1 4.1545 -5.3482 0.7760 31 1 4.8855 -3.7902 0.3216 32 1 6.2926 -5.9506 2.9782 33 1 6.3767 -5.5343 1.2585 34 1 8.3617 -4.9147 3.0529 35 1 8.0284 -3.9223 1.5949 36 1 5.4384 -2.1997 1.8827 37 1 4.6302 -2.4301 3.4688 38 1 1.8798 -5.1605 -2.2183 39 1 0.6558 -7.2875 -2.4205 40 1 -0.4140 -8.2856 -0.4400 41 1 -0.2695 -7.1508 1.7406 42 1 0.9620 -5.0283 1.9447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278570002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:31 Heat of formation + Delta-G solvation = 5.220511 kcal Electronic energy + Delta-G solvation = -21016.395043 eV Core-core repulsion = 18086.218332 eV Total energy + Delta-G solvation = -2930.176711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.04989 -37.53740 -35.27887 -32.73482 -31.25427 -30.41749 -29.37555 -28.46352 -26.14318 -24.63162 -22.78857 -22.07638 -21.88456 -19.86467 -19.41345 -16.70849 -16.55306 -16.10831 -16.02966 -15.09728 -14.73370 -14.64246 -14.41488 -14.20231 -13.50447 -13.39654 -13.06124 -12.85338 -12.55685 -12.32538 -12.18137 -12.07472 -11.84007 -11.71904 -11.21307 -11.11884 -11.00477 -10.82241 -10.63906 -10.54951 -10.36917 -10.34979 -9.82675 -9.60875 -9.22536 -8.49521 -8.43504 -8.09976 -7.84746 -7.71684 -6.09746 -4.14515 1.83662 1.89042 1.90469 2.32604 3.25451 3.33180 3.34537 4.25824 4.37523 4.44876 4.57974 4.74291 5.03816 5.10559 5.20218 5.28209 5.31300 5.38096 5.39956 5.46503 5.58015 5.62787 5.64734 5.78153 5.86194 5.88458 6.00782 6.03457 6.14132 6.24425 6.32677 6.41427 6.52780 6.68639 6.89199 6.95579 7.16431 7.39672 7.50018 7.54663 7.87306 7.92231 8.11884 8.25276 8.91000 9.50471 11.00630 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008085 B = 0.006888 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.507851 B = 4063.789168 C = 7055.465697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.127 3.873 11 H 0.040 0.960 12 N -0.680 5.680 13 C 0.067 3.933 14 C -0.089 4.089 15 H 0.092 0.908 16 C -0.120 4.120 17 C -0.064 4.064 18 S -0.316 6.316 19 C -0.055 4.055 20 C -0.053 4.053 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.088 4.088 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.358 0.642 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 -12.746 2.333 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.070 0.930 9 C -0.009 4.009 10 C 0.018 3.982 11 H 0.058 0.942 12 N -0.314 5.314 13 C -0.064 4.064 14 C -0.110 4.110 15 H 0.110 0.890 16 C -0.159 4.159 17 C -0.212 4.212 18 S -0.089 6.089 19 C -0.203 4.203 20 C -0.054 4.054 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.180 0.820 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.718 -12.538 3.535 15.675 hybrid contribution 0.331 1.053 -1.580 1.927 sum 9.049 -11.485 1.955 14.752 Atomic orbital electron populations 1.69961 1.06041 1.26787 1.49755 1.24964 0.94774 0.99125 0.94986 0.86653 0.79922 0.83652 0.78153 1.20701 1.21117 1.19787 1.21094 0.92605 0.90937 1.51939 0.92963 1.19252 0.93621 0.89719 0.98263 1.20635 0.95134 0.92614 0.89828 0.94175 1.60477 1.15766 1.25624 1.29566 1.22141 0.90312 0.99699 0.94268 1.21714 0.96480 0.93111 0.99699 0.88990 1.22030 0.91724 0.98992 1.03179 1.24114 1.00066 0.96296 1.00755 1.87931 1.21275 1.49970 1.49731 1.24305 0.94003 0.99280 1.02740 1.20202 0.96780 0.95664 0.92740 1.21044 1.00406 0.95445 0.97399 1.20971 0.99129 0.96374 0.98100 1.20975 1.01232 1.00037 0.93360 1.21130 1.00090 0.96392 0.97212 1.21048 0.95667 0.94618 0.99274 0.92822 0.95868 0.95311 0.82022 0.91415 0.95533 0.90688 0.90631 0.88129 0.89517 0.89065 0.87216 0.86750 0.86967 0.87113 0.86890 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.76 8.12 -34.44 -0.28 -14.04 16 8 H 0.05 1.31 7.49 -52.49 -0.39 0.92 16 9 C 0.03 0.70 4.55 -27.88 -0.13 0.57 16 10 C 0.13 2.48 2.19 -68.87 -0.15 2.32 16 11 H 0.04 0.80 7.66 -51.93 -0.40 0.40 16 12 N -0.68 -11.67 5.55 -107.95 -0.60 -12.27 16 13 C 0.07 0.95 4.44 -3.82 -0.02 0.93 16 14 C -0.09 -1.09 2.86 -90.30 -0.26 -1.35 16 15 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.12 -1.21 5.97 -26.42 -0.16 -1.37 16 17 C -0.06 -0.65 7.46 37.81 0.28 -0.37 16 18 S -0.32 -4.21 23.26 -107.50 -2.50 -6.71 16 19 C -0.06 -0.74 5.88 37.82 0.22 -0.52 16 20 C -0.05 -0.95 4.71 -104.62 -0.49 -1.44 16 21 C -0.12 -2.05 9.67 -39.58 -0.38 -2.43 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.09 -1.49 9.33 -39.58 -0.37 -1.86 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.36 6.67 6.22 -39.29 -0.24 6.42 16 30 H 0.07 0.96 7.95 -51.93 -0.41 0.54 16 31 H 0.03 0.39 7.95 -51.93 -0.41 -0.02 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.71 7.49 -51.93 -0.39 0.32 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.32 7.79 -51.93 -0.40 0.91 16 37 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.11 1.77 8.04 -52.48 -0.42 1.35 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.13 2.22 7.72 -52.49 -0.41 1.81 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -28.24 351.50 -11.95 -40.19 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.84 Total: 7.42 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.02 Total: -24.82 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.14 Total: -37.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.50 Total: -6.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.24 -11.95 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278570002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.409 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds