Wall clock time and date at job start Tue Mar 31 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99963 * 2 1 4 4 H 1.48501 * 109.47099 * 269.99944 * 3 2 1 5 5 H 1.48499 * 109.47412 * 30.00274 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.00132 * 3 2 1 7 7 C 1.37868 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00253 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47637 * 304.99866 * 10 9 7 12 12 N 1.46897 * 109.47281 * 65.00480 * 10 9 7 13 13 C 1.46904 * 111.00117 * 204.99841 * 12 10 9 14 14 C 1.53004 * 109.47210 * 179.97438 * 13 12 10 15 15 H 1.09005 * 108.82737 * 54.29683 * 14 13 12 16 16 C 1.52327 * 108.86860 * 172.82965 * 14 13 12 17 17 C 1.54255 * 112.58786 * 120.82038 * 16 14 13 18 18 S 1.83959 * 102.58393 * 24.52685 * 17 16 14 19 19 C 1.54257 * 108.86617 * 295.77009 * 14 13 12 20 20 C 1.50707 * 109.47073 * 185.00057 * 10 9 7 21 21 C 1.38238 * 119.99792 * 100.00219 * 20 10 9 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 10 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 279.98155 * 20 10 9 26 26 H 0.97001 * 119.99689 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46520 * 60.00400 * 9 7 2 28 28 H 1.08997 * 109.47067 * 300.00322 * 9 7 2 29 29 H 1.00896 * 110.99740 * 328.94941 * 12 10 9 30 30 H 1.09001 * 109.47145 * 299.99841 * 13 12 10 31 31 H 1.08996 * 109.46836 * 59.99833 * 13 12 10 32 32 H 1.08999 * 108.86943 * 241.63809 * 16 14 13 33 33 H 1.09005 * 108.86816 * 359.97438 * 16 14 13 34 34 H 1.08999 * 110.79032 * 142.80531 * 17 16 14 35 35 H 1.09006 * 110.79028 * 266.25383 * 17 16 14 36 36 H 1.09004 * 110.78666 * 332.92467 * 19 14 13 37 37 H 1.08998 * 110.79191 * 96.37707 * 19 14 13 38 38 H 1.08005 * 120.00068 * 359.97438 * 21 20 10 39 39 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 42 42 H 1.07999 * 119.99968 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9293 -3.5552 -0.8423 12 7 3.0082 -3.6539 1.2547 13 6 4.3094 -4.3142 1.0841 14 6 5.0735 -4.2855 2.4094 15 1 4.4458 -4.7211 3.1869 16 6 6.3367 -5.1249 2.2680 17 6 7.6211 -4.3112 2.5282 18 16 7.0180 -2.9417 3.5982 19 6 5.3782 -2.8189 2.7778 20 6 1.4958 -4.9637 -0.1244 21 6 1.4101 -5.5980 -1.3497 22 6 0.7231 -6.7921 -1.4631 23 6 0.1224 -7.3523 -0.3513 24 6 0.2035 -6.7154 0.8728 25 6 0.8944 -5.5235 0.9873 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 3.1227 -2.7136 1.6022 30 1 4.1545 -5.3482 0.7760 31 1 4.8855 -3.7902 0.3216 32 1 6.2926 -5.9506 2.9782 33 1 6.3767 -5.5343 1.2585 34 1 8.3617 -4.9147 3.0529 35 1 8.0284 -3.9223 1.5949 36 1 5.4384 -2.1997 1.8827 37 1 4.6302 -2.4301 3.4688 38 1 1.8798 -5.1605 -2.2183 39 1 0.6558 -7.2875 -2.4205 40 1 -0.4140 -8.2856 -0.4400 41 1 -0.2695 -7.1508 1.7406 42 1 0.9620 -5.0283 1.9447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278570002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:30 Heat of formation + Delta-G solvation = -8.509902 kcal Electronic energy + Delta-G solvation = -21016.990439 eV Core-core repulsion = 18086.218332 eV Total energy + Delta-G solvation = -2930.772107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34362 -38.66042 -36.67147 -34.66304 -32.48303 -31.61994 -30.68548 -29.95546 -27.41435 -26.22600 -23.89013 -23.66036 -23.16287 -21.12090 -20.60595 -18.59589 -17.66949 -17.48331 -17.12846 -16.54399 -16.41643 -15.89119 -15.51358 -15.41007 -14.84582 -14.61218 -14.48110 -14.07503 -13.88974 -13.67015 -13.46574 -13.42218 -13.23461 -12.87158 -12.79327 -12.67988 -12.42089 -12.21907 -12.11187 -11.98546 -11.73166 -11.57145 -11.31003 -11.12767 -10.81247 -10.59713 -9.67261 -9.41649 -9.26434 -8.77514 -8.21024 -6.32348 0.60623 0.66886 0.92550 1.35393 1.38104 1.39311 1.49017 2.37806 3.02568 3.11011 3.34135 3.51958 3.81396 4.02352 4.10285 4.13125 4.19060 4.28325 4.32358 4.40600 4.43344 4.50235 4.61920 4.67368 4.73984 4.80833 4.83029 4.85940 4.91379 4.95522 5.15810 5.23602 5.28016 5.32064 5.42699 5.50523 5.69254 5.74518 5.80680 5.88963 6.15533 6.27876 6.38326 6.61008 6.82531 7.36875 8.90146 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008085 B = 0.006888 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.507851 B = 4063.789168 C = 7055.465697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.142 3.858 11 H 0.031 0.969 12 N -0.679 5.679 13 C 0.074 3.926 14 C -0.079 4.079 15 H 0.088 0.912 16 C -0.116 4.116 17 C -0.050 4.050 18 S -0.356 6.356 19 C -0.052 4.052 20 C -0.077 4.077 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.104 4.104 26 H 0.263 0.737 27 H -0.011 1.011 28 H -0.001 1.001 29 H 0.346 0.654 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -14.795 2.061 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.004 3.996 10 C 0.032 3.968 11 H 0.049 0.951 12 N -0.311 5.311 13 C -0.057 4.057 14 C -0.100 4.100 15 H 0.107 0.893 16 C -0.155 4.155 17 C -0.198 4.198 18 S -0.129 6.129 19 C -0.200 4.200 20 C -0.078 4.078 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.017 0.983 29 H 0.167 0.833 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.046 -14.608 3.263 18.026 hybrid contribution -0.106 1.602 -1.515 2.208 sum 9.940 -13.006 1.747 16.462 Atomic orbital electron populations 1.70098 1.07742 1.27650 1.51276 1.25826 0.95529 1.02849 0.94749 0.85595 0.78889 0.79191 0.78290 1.20174 1.21044 1.18608 1.21451 0.93072 0.91731 1.50742 0.92213 1.19015 0.93859 0.91711 0.95062 1.20277 0.94100 0.91923 0.90451 0.95071 1.60502 1.17505 1.24903 1.28240 1.22155 0.88789 0.99353 0.95384 1.21661 0.97459 0.92668 0.98174 0.89321 1.21993 0.90322 0.98746 1.04482 1.24247 1.00407 0.94717 1.00388 1.88064 1.21545 1.52278 1.51049 1.24202 0.93992 0.99909 1.01870 1.20099 0.98228 0.95435 0.94037 1.21205 1.01237 0.96552 0.96795 1.21334 0.97826 0.95398 0.99777 1.21410 1.00174 1.00878 0.92479 1.21432 0.99244 0.95405 0.98815 1.21049 0.96845 0.95863 0.98498 0.92831 0.99282 0.98307 0.83313 0.90827 0.95941 0.89144 0.89328 0.85862 0.88753 0.90412 0.88199 0.86587 0.83993 0.83585 0.84425 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.44 0.28 -55.28 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.53 -28.66 8.12 25.60 0.21 -28.46 16 8 H 0.06 3.06 7.49 -2.91 -0.02 3.04 16 9 C 0.04 2.10 4.55 29.85 0.14 2.24 16 10 C 0.14 5.75 2.19 44.17 0.10 5.85 16 11 H 0.03 1.29 7.66 -2.39 -0.02 1.28 16 12 N -0.68 -24.01 5.55 -495.45 -2.75 -26.76 16 13 C 0.07 2.06 4.44 86.30 0.38 2.44 16 14 C -0.08 -1.86 2.86 -10.59 -0.03 -1.89 16 15 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 16 C -0.12 -2.05 5.97 30.80 0.18 -1.87 16 17 C -0.05 -0.89 7.46 72.41 0.54 -0.35 16 18 S -0.36 -9.20 23.26 -56.49 -1.31 -10.52 16 19 C -0.05 -1.40 5.88 72.41 0.43 -0.97 16 20 C -0.08 -2.81 4.71 -19.86 -0.09 -2.91 16 21 C -0.14 -4.51 9.67 22.27 0.22 -4.30 16 22 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 23 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 24 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 25 C -0.10 -3.55 9.33 22.27 0.21 -3.34 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.35 13.47 6.22 -89.70 -0.56 12.92 16 30 H 0.07 2.00 7.95 -2.39 -0.02 1.98 16 31 H 0.02 0.65 7.95 -2.39 -0.02 0.63 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.39 7.49 -2.38 -0.02 1.38 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 2.28 7.79 -2.38 -0.02 2.27 16 37 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.12 3.60 8.04 -2.91 -0.02 3.58 16 39 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.12 4.12 7.72 -2.91 -0.02 4.10 16 Total: -1.00 -63.09 351.50 2.08 -61.01 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.43 Total: 28.19 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 3.41 Total: -42.14 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.46 Total: -82.04 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.31 Total: -10.52 kcal Total: -63.09 2.08 -61.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278570002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.498 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds