Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47163 * 2 1 4 4 C 1.34775 * 120.00356 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99556 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00212 * 179.97438 * 4 3 2 7 7 C 1.39932 * 119.99883 * 174.55910 * 6 4 3 8 8 C 1.39009 * 120.03099 * 325.27977 * 7 6 4 9 9 C 1.38184 * 120.09458 * 180.25113 * 8 7 6 10 10 C 1.38127 * 120.15193 * 359.45212 * 9 8 7 11 11 C 1.50704 * 119.97107 * 180.25100 * 10 9 8 12 12 C 1.39073 * 120.05347 * 0.55068 * 10 9 8 13 13 N 1.39516 * 120.04490 * 179.70050 * 12 10 9 14 14 C 1.34780 * 120.00146 * 154.39424 * 13 12 10 15 15 O 1.21748 * 119.99385 * 3.96003 * 14 13 12 16 16 C 1.46154 * 120.00680 * 183.96353 * 14 13 12 17 17 H 1.08004 * 119.99451 * 359.97438 * 16 14 13 18 18 C 1.40120 * 120.00463 * 179.97438 * 16 14 13 19 19 N 1.30641 * 120.00061 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00340 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46910 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47187 * 119.99765 * 20 18 16 23 23 H 1.48495 * 109.47513 * 240.00133 * 20 18 16 24 24 C 1.38665 * 120.02959 * 145.26234 * 7 6 4 25 25 H 1.09003 * 109.47158 * 60.00220 * 1 2 3 26 26 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47300 * 300.00024 * 1 2 3 28 28 H 1.09004 * 109.47239 * 239.99961 * 2 1 3 29 29 H 1.09003 * 109.47158 * 119.99780 * 2 1 3 30 30 H 0.97002 * 120.00007 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00260 * 354.56796 * 6 4 3 32 32 H 1.08000 * 119.94700 * 359.97438 * 8 7 6 33 33 H 1.08003 * 119.92197 * 179.72538 * 9 8 7 34 34 H 1.09000 * 109.47124 * 270.30076 * 11 10 9 35 35 H 1.09002 * 109.47338 * 30.30000 * 11 10 9 36 36 H 1.08998 * 109.47027 * 150.29745 * 11 10 9 37 37 H 0.97002 * 120.00561 * 334.39737 * 13 12 10 38 38 H 0.96990 * 120.00245 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.07244 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8982 0.0000 7 6 5.1631 3.1558 0.1154 8 6 5.9615 2.3341 0.9027 9 6 7.3142 2.5904 1.0218 10 6 7.8801 3.6566 0.3504 11 6 9.3568 3.9289 0.4787 12 6 7.0872 4.4827 -0.4389 13 7 7.6579 5.5633 -1.1120 14 6 7.0804 6.0405 -2.2324 15 8 6.0228 5.5761 -2.6172 16 6 7.7238 7.1152 -2.9856 17 1 8.6618 7.5273 -2.6439 18 6 7.1237 7.6108 -4.1507 19 7 5.9892 7.1120 -4.5642 20 14 7.9456 8.9849 -5.1128 21 1 9.2118 9.3713 -4.4402 22 1 8.2407 8.5165 -6.4908 23 1 7.0382 10.1588 -5.1728 24 6 5.7262 4.2307 -0.5557 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 3.1659 3.6342 -0.0803 32 1 5.5231 1.4970 1.4256 33 1 7.9311 1.9528 1.6378 34 1 9.5311 4.5967 1.3223 35 1 9.8864 2.9905 0.6426 36 1 9.7208 4.3965 -0.4361 37 1 8.4703 5.9713 -0.7737 38 1 5.5740 7.4548 -5.3709 39 1 5.1080 4.8700 -1.1685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279277028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = -42.547607 kcal Electronic energy + Delta-G solvation = -22649.804394 eV Core-core repulsion = 19171.263087 eV Total energy + Delta-G solvation = -3478.541307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35228 -39.09168 -37.05480 -35.52056 -34.64958 -33.18057 -32.45096 -31.34962 -29.98007 -29.10249 -26.48820 -25.55201 -23.19766 -22.50377 -21.38449 -20.56805 -19.60365 -18.38149 -17.66839 -16.94883 -15.84400 -15.59329 -15.54232 -14.90393 -14.67640 -14.31851 -14.19534 -14.03142 -13.78781 -13.28950 -12.84954 -12.66918 -12.62875 -12.32971 -12.05513 -12.02098 -11.75637 -11.53011 -11.33792 -11.16068 -11.07809 -10.82320 -10.65682 -10.32573 -10.00674 -9.82367 -9.19415 -9.09480 -8.87151 -7.73655 -7.49842 -6.90936 -6.36717 -4.84469 1.91508 2.21089 2.75649 3.04177 3.12844 3.17117 3.33117 3.97121 4.27152 4.29421 4.57474 4.69230 4.79244 4.90422 5.13213 5.42205 5.57638 5.59255 5.61994 5.72923 5.74308 5.81595 5.97940 6.00650 6.09705 6.27749 6.35046 6.41965 6.51234 6.80585 6.89345 7.05041 7.19690 7.24858 7.29399 7.57907 7.72865 8.06486 8.08433 8.19197 8.69093 8.82711 9.20836 10.35429 10.53622 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003953 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.093475 B = 7081.259929 C = 8602.962218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.748 5.748 4 C 0.703 3.297 5 O -0.575 6.575 6 N -0.680 5.680 7 C 0.171 3.829 8 C -0.162 4.162 9 C -0.084 4.084 10 C -0.165 4.165 11 C -0.103 4.103 12 C 0.208 3.792 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.557 6.557 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.087 3.913 19 N -0.759 5.759 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.169 4.169 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.396 0.604 31 H 0.405 0.595 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.271 0.729 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -6.917 10.055 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.405 5.405 4 C 0.403 3.597 5 O -0.452 6.452 6 N -0.326 5.326 7 C 0.077 3.923 8 C -0.183 4.183 9 C -0.103 4.103 10 C -0.169 4.169 11 C -0.160 4.160 12 C 0.107 3.893 13 N -0.333 5.333 14 C 0.350 3.650 15 O -0.440 6.440 16 C -0.573 4.573 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.387 5.387 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.192 4.192 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.239 0.761 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.082 0.918 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.044 -8.063 9.546 13.881 hybrid contribution 0.129 1.484 -0.476 1.563 sum -5.916 -6.579 9.070 12.671 Atomic orbital electron populations 1.22011 0.94531 1.03134 1.02549 1.21137 0.93703 0.81842 1.02395 1.45166 1.05283 1.09149 1.80863 1.15908 0.82598 0.83309 0.77857 1.90938 1.54527 1.43082 1.56624 1.42500 1.07081 1.06646 1.76407 1.17339 0.81682 0.96863 0.96453 1.20778 0.93944 1.01576 1.02032 1.20455 0.94208 0.96485 0.99176 1.19577 0.95514 0.97651 1.04175 1.20581 0.92150 1.01569 1.01728 1.17516 0.90997 0.88860 0.91879 1.44070 1.29562 1.31939 1.27734 1.18391 0.85073 0.83409 0.78171 1.90518 1.23436 1.61410 1.68628 1.20885 1.08515 1.18693 1.09209 0.90919 1.25742 0.94180 0.96689 0.96849 1.69988 1.13979 1.35368 1.19362 0.86227 0.79982 0.80545 0.79563 1.18615 1.20003 1.20000 1.21589 0.94835 1.01219 1.01562 0.91906 0.90761 0.92021 0.91594 0.91656 0.76996 0.76057 0.86037 0.86614 0.92161 0.92108 0.91819 0.77212 0.91800 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.03 37.16 0.37 -0.69 16 2 C 0.13 1.33 6.39 -4.05 -0.03 1.30 16 3 N -0.75 -8.62 5.56 -65.23 -0.36 -8.98 16 4 C 0.70 11.44 8.29 -86.92 -0.72 10.72 16 5 O -0.58 -11.54 14.13 5.29 0.07 -11.46 16 6 N -0.68 -11.07 5.34 -14.24 -0.08 -11.14 16 7 C 0.17 3.34 6.25 -83.72 -0.52 2.81 16 8 C -0.16 -3.02 8.65 -39.32 -0.34 -3.36 16 9 C -0.08 -1.46 9.69 -39.64 -0.38 -1.84 16 10 C -0.16 -3.02 5.90 -104.35 -0.62 -3.63 16 11 C -0.10 -1.52 9.44 36.01 0.34 -1.18 16 12 C 0.21 4.47 6.43 -83.80 -0.54 3.94 16 13 N -0.69 -15.53 4.94 -11.22 -0.06 -15.58 16 14 C 0.54 14.82 7.62 -13.08 -0.10 14.72 16 15 O -0.56 -16.94 11.92 5.15 0.06 -16.88 16 16 C -0.54 -14.43 9.53 -35.70 -0.34 -14.77 16 17 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 18 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 19 N -0.76 -21.65 11.82 55.55 0.66 -21.00 16 20 Si 0.91 19.25 29.56 -169.99 -5.02 14.23 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.17 -3.72 8.70 -39.18 -0.34 -4.06 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.40 3.39 8.49 -40.82 -0.35 3.04 16 31 H 0.40 5.39 8.84 -40.82 -0.36 5.03 16 32 H 0.12 2.26 6.52 -52.49 -0.34 1.91 16 33 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.06 0.97 7.00 -51.93 -0.36 0.60 16 37 H 0.39 7.62 7.40 -40.82 -0.30 7.32 16 38 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 39 H 0.16 4.03 5.51 -52.49 -0.29 3.74 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -35.17 331.93 -7.97 -43.14 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -4.93 Total: 16.53 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.31 Total: 6.16 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.16 Total: -56.71 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: 0.14 Total: -28.34 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.17 -7.97 -43.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279277028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.589 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds