Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47163 * 2 1 4 4 C 1.34775 * 120.00356 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99556 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00212 * 179.97438 * 4 3 2 7 7 C 1.39932 * 119.99883 * 174.55910 * 6 4 3 8 8 C 1.39009 * 120.03099 * 325.27977 * 7 6 4 9 9 C 1.38184 * 120.09458 * 180.25113 * 8 7 6 10 10 C 1.38127 * 120.15193 * 359.45212 * 9 8 7 11 11 C 1.50704 * 119.97107 * 180.25100 * 10 9 8 12 12 C 1.39073 * 120.05347 * 0.55068 * 10 9 8 13 13 N 1.39516 * 120.04490 * 179.70050 * 12 10 9 14 14 C 1.34780 * 120.00146 * 154.39424 * 13 12 10 15 15 O 1.21748 * 119.99385 * 3.96003 * 14 13 12 16 16 C 1.46154 * 120.00680 * 183.96353 * 14 13 12 17 17 H 1.08004 * 119.99451 * 359.97438 * 16 14 13 18 18 C 1.40120 * 120.00463 * 179.97438 * 16 14 13 19 19 N 1.30641 * 120.00061 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00340 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46910 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47187 * 119.99765 * 20 18 16 23 23 H 1.48495 * 109.47513 * 240.00133 * 20 18 16 24 24 C 1.38665 * 120.02959 * 145.26234 * 7 6 4 25 25 H 1.09003 * 109.47158 * 60.00220 * 1 2 3 26 26 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47300 * 300.00024 * 1 2 3 28 28 H 1.09004 * 109.47239 * 239.99961 * 2 1 3 29 29 H 1.09003 * 109.47158 * 119.99780 * 2 1 3 30 30 H 0.97002 * 120.00007 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00260 * 354.56796 * 6 4 3 32 32 H 1.08000 * 119.94700 * 359.97438 * 8 7 6 33 33 H 1.08003 * 119.92197 * 179.72538 * 9 8 7 34 34 H 1.09000 * 109.47124 * 270.30076 * 11 10 9 35 35 H 1.09002 * 109.47338 * 30.30000 * 11 10 9 36 36 H 1.08998 * 109.47027 * 150.29745 * 11 10 9 37 37 H 0.97002 * 120.00561 * 334.39737 * 13 12 10 38 38 H 0.96990 * 120.00245 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.07244 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8982 0.0000 7 6 5.1631 3.1558 0.1154 8 6 5.9615 2.3341 0.9027 9 6 7.3142 2.5904 1.0218 10 6 7.8801 3.6566 0.3504 11 6 9.3568 3.9289 0.4787 12 6 7.0872 4.4827 -0.4389 13 7 7.6579 5.5633 -1.1120 14 6 7.0804 6.0405 -2.2324 15 8 6.0228 5.5761 -2.6172 16 6 7.7238 7.1152 -2.9856 17 1 8.6618 7.5273 -2.6439 18 6 7.1237 7.6108 -4.1507 19 7 5.9892 7.1120 -4.5642 20 14 7.9456 8.9849 -5.1128 21 1 9.2118 9.3713 -4.4402 22 1 8.2407 8.5165 -6.4908 23 1 7.0382 10.1588 -5.1728 24 6 5.7262 4.2307 -0.5557 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 3.1659 3.6342 -0.0803 32 1 5.5231 1.4970 1.4256 33 1 7.9311 1.9528 1.6378 34 1 9.5311 4.5967 1.3223 35 1 9.8864 2.9905 0.6426 36 1 9.7208 4.3965 -0.4361 37 1 8.4703 5.9713 -0.7737 38 1 5.5740 7.4548 -5.3709 39 1 5.1080 4.8700 -1.1685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279277028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -68.722294 kcal Electronic energy + Delta-G solvation = -22650.939413 eV Core-core repulsion = 19171.263087 eV Total energy + Delta-G solvation = -3479.676326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73919 -40.68237 -38.80452 -36.73278 -36.03454 -34.99997 -34.38980 -32.63122 -30.96972 -30.76671 -28.36128 -26.96576 -24.21214 -24.05064 -22.61582 -22.21998 -21.21139 -19.82561 -19.29738 -18.56045 -17.59470 -16.95387 -16.83963 -16.38899 -16.16533 -15.77216 -15.61311 -15.39482 -15.10261 -14.80517 -14.41156 -14.31357 -14.08597 -13.41885 -13.25132 -13.18959 -12.96007 -12.82819 -12.72106 -12.69543 -12.51728 -12.37610 -12.30004 -11.98642 -11.46098 -11.38154 -10.98370 -10.64400 -10.17026 -9.74774 -9.09486 -8.54322 -8.35835 -6.93751 0.42136 0.62565 1.39712 1.40593 1.57253 1.58568 2.00055 2.21086 2.38902 2.90282 2.99545 3.19733 3.58753 4.05434 4.10952 4.22238 4.22919 4.38289 4.51400 4.53459 4.62338 4.82721 4.90709 4.92222 5.00809 5.05901 5.17771 5.23869 5.26003 5.35186 5.44218 5.51863 5.56763 5.70183 5.80929 5.88826 6.08084 6.18002 6.44416 6.78402 6.91958 7.34857 7.42302 8.35000 8.56480 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003953 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.093475 B = 7081.259929 C = 8602.962218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 N -0.729 5.729 4 C 0.698 3.302 5 O -0.615 6.615 6 N -0.677 5.677 7 C 0.167 3.833 8 C -0.163 4.163 9 C -0.077 4.077 10 C -0.157 4.157 11 C -0.102 4.102 12 C 0.176 3.824 13 N -0.682 5.682 14 C 0.527 3.473 15 O -0.600 6.600 16 C -0.563 4.563 17 H 0.093 0.907 18 C 0.030 3.970 19 N -0.812 5.812 20 Si 1.000 3.000 21 H -0.245 1.245 22 H -0.270 1.270 23 H -0.267 1.267 24 C -0.194 4.194 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.413 0.587 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.408 0.592 38 H 0.277 0.723 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -6.934 11.106 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.005 3.995 3 N -0.386 5.386 4 C 0.398 3.602 5 O -0.495 6.495 6 N -0.324 5.324 7 C 0.072 3.928 8 C -0.185 4.185 9 C -0.096 4.096 10 C -0.161 4.161 11 C -0.158 4.158 12 C 0.077 3.923 13 N -0.325 5.325 14 C 0.334 3.666 15 O -0.486 6.486 16 C -0.598 4.598 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.441 5.441 20 Si 0.820 3.180 21 H -0.168 1.168 22 H -0.195 1.195 23 H -0.192 1.192 24 C -0.217 4.217 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.249 0.751 31 H 0.253 0.747 32 H 0.143 0.857 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.046 -8.081 10.651 14.290 hybrid contribution -0.255 1.365 -0.698 1.554 sum -5.302 -6.716 9.953 13.125 Atomic orbital electron populations 1.21958 0.91364 1.04460 1.03317 1.21330 0.96173 0.80499 1.01536 1.45131 1.03780 1.10669 1.79006 1.16123 0.83802 0.82568 0.77681 1.90895 1.55966 1.44064 1.58597 1.42456 1.06377 1.07375 1.76231 1.17389 0.83154 0.96167 0.96123 1.20984 0.94738 1.01187 1.01568 1.20904 0.93967 0.96153 0.98528 1.19950 0.97258 0.96610 1.02323 1.20664 0.89386 1.03430 1.02347 1.17822 0.91322 0.89672 0.93448 1.43637 1.29763 1.32323 1.26794 1.18771 0.84820 0.83685 0.79305 1.90501 1.25171 1.62782 1.70188 1.21413 1.09449 1.19034 1.09920 0.88888 1.26982 0.94525 0.99383 0.97714 1.70144 1.16092 1.37534 1.20319 0.84920 0.79220 0.76378 0.77517 1.16820 1.19534 1.19214 1.21338 0.95341 1.02273 1.02773 0.91504 0.89155 0.90824 0.93056 0.92008 0.75087 0.74742 0.85667 0.82689 0.89707 0.89607 0.92626 0.75584 0.91290 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.03 71.98 0.72 -0.95 16 2 C 0.13 2.45 6.39 86.38 0.55 3.00 16 3 N -0.73 -16.45 5.56 -478.54 -2.66 -19.11 16 4 C 0.70 22.96 8.29 179.06 1.48 24.44 16 5 O -0.62 -24.99 14.13 -4.00 -0.06 -25.05 16 6 N -0.68 -22.71 5.34 -317.23 -1.69 -24.40 16 7 C 0.17 6.70 6.25 38.13 0.24 6.93 16 8 C -0.16 -6.01 8.65 22.44 0.19 -5.81 16 9 C -0.08 -2.50 9.69 22.23 0.22 -2.28 16 10 C -0.16 -5.54 5.90 -19.69 -0.12 -5.65 16 11 C -0.10 -2.69 9.44 71.24 0.67 -2.02 16 12 C 0.18 7.75 6.43 38.28 0.25 7.99 16 13 N -0.68 -31.40 4.94 -307.61 -1.52 -32.92 16 14 C 0.53 29.98 7.62 86.30 0.66 30.63 16 15 O -0.60 -38.70 11.92 -4.50 -0.05 -38.76 16 16 C -0.56 -30.74 9.53 24.78 0.24 -30.50 16 17 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.63 5.50 85.33 0.47 2.10 16 19 N -0.81 -47.98 11.82 21.85 0.26 -47.72 16 20 Si 1.00 39.41 29.56 68.60 2.03 41.44 16 21 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.19 -8.98 8.70 22.53 0.20 -8.78 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.41 6.64 8.49 -92.71 -0.79 5.85 16 31 H 0.42 11.60 8.84 -92.71 -0.82 10.78 16 32 H 0.13 4.55 6.52 -2.91 -0.02 4.53 16 33 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.86 8.09 -2.39 -0.02 1.85 16 36 H 0.05 1.57 7.00 -2.39 -0.02 1.56 16 37 H 0.41 15.80 7.40 -92.71 -0.69 15.12 16 38 H 0.28 14.78 8.29 -92.72 -0.77 14.01 16 39 H 0.13 6.81 5.51 -2.91 -0.02 6.79 16 Total: -1.00 -80.55 331.93 0.89 -79.65 By element: Atomic # 1 Polarization: 48.93 SS G_CDS: -1.17 Total: 47.76 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 5.77 Total: 19.11 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.62 Total: -124.16 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -0.11 Total: -63.80 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -80.55 0.89 -79.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279277028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.930 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds