Wall clock time and date at job start Tue Mar 31 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46501 * 120.00254 * 2 1 4 4 C 1.53003 * 109.46959 * 270.00195 * 3 2 1 5 5 C 1.50701 * 109.47043 * 179.97438 * 4 3 2 6 6 N 1.34779 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00206 * 0.02562 * 5 4 3 8 8 C 1.34777 * 120.00041 * 180.02562 * 2 1 3 9 9 O 1.21585 * 120.00012 * 179.97438 * 8 2 1 10 10 N 1.34775 * 119.99741 * 359.97438 * 8 2 1 11 11 C 1.39253 * 119.99783 * 184.28187 * 10 8 2 12 12 C 1.39478 * 119.83310 * 324.72072 * 11 10 8 13 13 C 1.36370 * 120.16798 * 180.25981 * 12 11 10 14 14 C 1.40867 * 119.82631 * 359.49237 * 13 12 11 15 15 C 1.41158 * 120.16048 * 180.23331 * 14 13 12 16 16 H 1.08001 * 120.00061 * 215.05514 * 15 14 13 17 17 C 1.39889 * 120.00078 * 35.05412 * 15 14 13 18 18 N 1.30875 * 120.00321 * 355.51375 * 17 15 14 19 19 Si 1.86810 * 119.99960 * 175.51002 * 17 15 14 20 20 H 1.48502 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46675 * 120.00115 * 19 17 15 22 22 H 1.48488 * 109.47135 * 240.00221 * 19 17 15 23 23 C 1.40865 * 119.67470 * 0.52662 * 14 13 12 24 24 C 1.36376 * 119.82679 * 359.72858 * 23 14 13 25 25 H 1.09003 * 109.47398 * 270.00083 * 1 2 3 26 26 H 1.09009 * 109.47398 * 29.99633 * 1 2 3 27 27 H 1.08998 * 109.47448 * 149.99959 * 1 2 3 28 28 H 1.08995 * 109.46890 * 29.99710 * 3 2 1 29 29 H 1.08994 * 109.47637 * 150.00247 * 3 2 1 30 30 H 1.09000 * 109.47341 * 299.99672 * 4 3 2 31 31 H 1.09000 * 109.47524 * 59.99923 * 4 3 2 32 32 H 0.97004 * 119.99555 * 359.97438 * 6 5 4 33 33 H 0.96996 * 120.00158 * 180.02562 * 6 5 4 34 34 H 0.96992 * 120.00243 * 4.27344 * 10 8 2 35 35 H 1.07998 * 119.91667 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.08697 * 179.74678 * 13 12 11 37 37 H 0.97000 * 120.00449 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.08451 * 179.70825 * 23 14 13 39 39 H 1.08003 * 119.91478 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2054 3.0157 -1.4426 6 7 3.5419 3.5997 -2.6098 7 8 3.5088 3.5409 -0.3923 8 6 2.1388 -1.1672 -0.0005 9 8 3.3547 -1.1672 -0.0010 10 7 1.4649 -2.3344 -0.0005 11 6 2.1583 -3.5387 0.0890 12 6 3.4029 -3.6701 -0.5267 13 6 4.0855 -4.8481 -0.4478 14 6 3.5352 -5.9302 0.2667 15 6 4.2379 -7.1511 0.3570 16 1 3.6972 -8.0861 0.3647 17 6 5.6345 -7.1502 0.4364 18 7 6.2947 -6.0244 0.3388 19 14 6.5572 -8.7558 0.6820 20 1 5.5869 -9.8772 0.7609 21 1 7.4776 -8.9777 -0.4621 22 1 7.3405 -8.6888 1.9417 23 6 2.2775 -5.7900 0.8854 24 6 1.6044 -4.6075 0.7934 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1384 0.5137 30 1 3.0415 0.9507 -1.9564 31 1 1.5000 1.8407 -1.9564 32 1 3.2996 3.1795 -3.4498 33 1 4.0268 4.4397 -2.6098 34 1 0.4970 -2.3355 -0.0627 35 1 3.8251 -2.8384 -1.0711 36 1 5.0472 -4.9497 -0.9285 37 1 7.2632 -6.0236 0.3942 38 1 1.8473 -6.6169 1.4309 39 1 0.6398 -4.4985 1.2669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287136639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:54 Heat of formation + Delta-G solvation = -39.333659 kcal Electronic energy + Delta-G solvation = -22468.772992 eV Core-core repulsion = 18990.371052 eV Total energy + Delta-G solvation = -3478.401939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25116 -39.48352 -37.53529 -35.54691 -34.45496 -33.88105 -32.94601 -31.22687 -29.44615 -28.75276 -26.85755 -25.30751 -23.80658 -21.33206 -20.97325 -20.45291 -19.22972 -17.97979 -17.60306 -17.23508 -17.00136 -16.34566 -15.55267 -15.43950 -15.17062 -14.66077 -13.98103 -13.89271 -13.66177 -13.32184 -13.08768 -12.89656 -12.62480 -12.38699 -12.31476 -12.02086 -11.68833 -11.40243 -11.14340 -11.11092 -10.86502 -10.45449 -10.21721 -9.92798 -9.92009 -9.82310 -9.54352 -9.02791 -8.72722 -8.59687 -7.46416 -6.81143 -6.53741 -4.27520 2.45733 2.67259 2.86024 3.09618 3.14225 3.17305 3.21055 3.40855 3.72671 4.03261 4.31759 4.69077 4.78049 4.89600 4.91535 4.99706 5.31159 5.35580 5.51924 5.67889 5.72829 6.00656 6.17738 6.42014 6.49820 6.52777 6.84981 6.91115 7.06640 7.10013 7.18709 7.33065 7.39616 7.70513 7.84448 8.04379 8.07196 8.15269 8.34336 8.46855 8.73456 8.98151 8.99472 9.13750 10.37444 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.003254 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.101193 B = 8602.570771 C = 9534.052938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.640 5.640 3 C 0.151 3.849 4 C -0.160 4.160 5 C 0.523 3.477 6 N -0.859 5.859 7 O -0.544 6.544 8 C 0.694 3.306 9 O -0.569 6.569 10 N -0.667 5.667 11 C 0.024 3.976 12 C -0.094 4.094 13 C -0.143 4.143 14 C 0.098 3.902 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.203 4.203 24 C -0.116 4.116 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.400 0.600 34 H 0.390 0.610 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.430 13.813 -6.372 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.379 5.379 3 C 0.027 3.973 4 C -0.202 4.202 5 C 0.308 3.692 6 N -0.422 5.422 7 O -0.420 6.420 8 C 0.396 3.604 9 O -0.445 6.445 10 N -0.315 5.315 11 C -0.069 4.069 12 C -0.114 4.114 13 C -0.163 4.163 14 C 0.096 3.904 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.436 5.436 19 Si 0.739 3.261 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.223 4.223 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.230 0.770 34 H 0.225 0.775 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.193 14.082 -5.564 17.714 hybrid contribution -0.028 -0.441 -0.319 0.545 sum -9.221 13.641 -5.883 17.484 Atomic orbital electron populations 1.21692 0.80314 1.02591 1.01734 1.47081 1.06039 1.05035 1.79755 1.20930 0.98871 0.83434 0.94076 1.22092 1.01390 0.95135 1.01567 1.20612 0.78669 0.86323 0.83572 1.43906 1.61665 1.27901 1.08743 1.90760 1.54645 1.65322 1.31307 1.15999 0.85555 0.80269 0.78532 1.90943 1.11315 1.85540 1.56688 1.42274 1.08988 1.03793 1.76427 1.17111 0.96538 0.84612 1.08637 1.20661 0.93914 0.97591 0.99240 1.21299 1.00987 0.92798 1.01177 1.17720 0.90522 0.93664 0.88529 1.19490 0.91120 0.93693 1.45203 0.90681 1.25878 0.98138 0.97614 0.92991 1.69801 1.08994 1.26773 1.38001 0.86176 0.79504 0.81969 0.78457 1.18670 1.20051 1.20048 1.20674 0.98906 0.96571 1.06165 1.20045 0.99186 0.94212 1.00239 0.92683 0.91133 0.91535 0.90056 0.88810 0.87969 0.88929 0.77023 0.76966 0.77459 0.87392 0.85268 0.91200 0.88572 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.24 59.84 0.61 1.31 16 2 N -0.64 -8.49 2.87 -187.36 -0.54 -9.03 16 3 C 0.15 1.91 4.70 -4.04 -0.02 1.89 16 4 C -0.16 -1.61 6.02 -27.88 -0.17 -1.78 16 5 C 0.52 5.70 8.10 -10.98 -0.09 5.61 16 6 N -0.86 -5.84 8.87 31.22 0.28 -5.57 16 7 O -0.54 -8.24 16.82 5.56 0.09 -8.14 16 8 C 0.69 12.76 8.11 -86.92 -0.70 12.05 16 9 O -0.57 -13.10 13.34 5.29 0.07 -13.03 16 10 N -0.67 -11.95 5.18 -14.10 -0.07 -12.02 16 11 C 0.02 0.53 6.31 -83.57 -0.53 0.00 16 12 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 13 C -0.14 -3.87 8.61 -39.26 -0.34 -4.21 16 14 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 15 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 18 N -0.81 -21.94 10.61 55.54 0.59 -21.35 16 19 Si 0.91 19.40 29.56 -169.99 -5.03 14.37 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 24 C -0.12 -2.56 9.90 -39.79 -0.39 -2.96 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.43 8.07 -51.92 -0.42 0.01 16 27 H 0.07 0.52 6.30 -51.93 -0.33 0.19 16 28 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 29 H 0.09 1.51 7.38 -51.93 -0.38 1.13 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 1.59 8.83 -40.82 -0.36 1.23 16 33 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 34 H 0.39 5.42 6.51 -40.82 -0.27 5.15 16 35 H 0.11 2.75 6.22 -52.49 -0.33 2.42 16 36 H 0.13 3.68 6.15 -52.49 -0.32 3.35 16 37 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -34.93 332.02 -7.83 -42.76 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.85 Total: 12.25 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.38 Total: -5.25 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.26 Total: -47.97 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.16 Total: -21.17 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.93 -7.83 -42.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287136639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.426 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds