Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46501 * 120.00254 * 2 1 4 4 C 1.53003 * 109.46959 * 270.00195 * 3 2 1 5 5 C 1.50701 * 109.47043 * 179.97438 * 4 3 2 6 6 N 1.34779 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00206 * 0.02562 * 5 4 3 8 8 C 1.34777 * 120.00041 * 180.02562 * 2 1 3 9 9 O 1.21585 * 120.00012 * 179.97438 * 8 2 1 10 10 N 1.34775 * 119.99741 * 359.97438 * 8 2 1 11 11 C 1.39253 * 119.99783 * 184.28187 * 10 8 2 12 12 C 1.39478 * 119.83310 * 324.72072 * 11 10 8 13 13 C 1.36370 * 120.16798 * 180.25981 * 12 11 10 14 14 C 1.40867 * 119.82631 * 359.49237 * 13 12 11 15 15 C 1.41158 * 120.16048 * 180.23331 * 14 13 12 16 16 H 1.08001 * 120.00061 * 215.05514 * 15 14 13 17 17 C 1.39889 * 120.00078 * 35.05412 * 15 14 13 18 18 N 1.30875 * 120.00321 * 355.51375 * 17 15 14 19 19 Si 1.86810 * 119.99960 * 175.51002 * 17 15 14 20 20 H 1.48502 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46675 * 120.00115 * 19 17 15 22 22 H 1.48488 * 109.47135 * 240.00221 * 19 17 15 23 23 C 1.40865 * 119.67470 * 0.52662 * 14 13 12 24 24 C 1.36376 * 119.82679 * 359.72858 * 23 14 13 25 25 H 1.09003 * 109.47398 * 270.00083 * 1 2 3 26 26 H 1.09009 * 109.47398 * 29.99633 * 1 2 3 27 27 H 1.08998 * 109.47448 * 149.99959 * 1 2 3 28 28 H 1.08995 * 109.46890 * 29.99710 * 3 2 1 29 29 H 1.08994 * 109.47637 * 150.00247 * 3 2 1 30 30 H 1.09000 * 109.47341 * 299.99672 * 4 3 2 31 31 H 1.09000 * 109.47524 * 59.99923 * 4 3 2 32 32 H 0.97004 * 119.99555 * 359.97438 * 6 5 4 33 33 H 0.96996 * 120.00158 * 180.02562 * 6 5 4 34 34 H 0.96992 * 120.00243 * 4.27344 * 10 8 2 35 35 H 1.07998 * 119.91667 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.08697 * 179.74678 * 13 12 11 37 37 H 0.97000 * 120.00449 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.08451 * 179.70825 * 23 14 13 39 39 H 1.08003 * 119.91478 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2054 3.0157 -1.4426 6 7 3.5419 3.5997 -2.6098 7 8 3.5088 3.5409 -0.3923 8 6 2.1388 -1.1672 -0.0005 9 8 3.3547 -1.1672 -0.0010 10 7 1.4649 -2.3344 -0.0005 11 6 2.1583 -3.5387 0.0890 12 6 3.4029 -3.6701 -0.5267 13 6 4.0855 -4.8481 -0.4478 14 6 3.5352 -5.9302 0.2667 15 6 4.2379 -7.1511 0.3570 16 1 3.6972 -8.0861 0.3647 17 6 5.6345 -7.1502 0.4364 18 7 6.2947 -6.0244 0.3388 19 14 6.5572 -8.7558 0.6820 20 1 5.5869 -9.8772 0.7609 21 1 7.4776 -8.9777 -0.4621 22 1 7.3405 -8.6888 1.9417 23 6 2.2775 -5.7900 0.8854 24 6 1.6044 -4.6075 0.7934 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1384 0.5137 30 1 3.0415 0.9507 -1.9564 31 1 1.5000 1.8407 -1.9564 32 1 3.2996 3.1795 -3.4498 33 1 4.0268 4.4397 -2.6098 34 1 0.4970 -2.3355 -0.0627 35 1 3.8251 -2.8384 -1.0711 36 1 5.0472 -4.9497 -0.9285 37 1 7.2632 -6.0236 0.3942 38 1 1.8473 -6.6169 1.4309 39 1 0.6398 -4.4985 1.2669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287136639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -65.704626 kcal Electronic energy + Delta-G solvation = -22469.916523 eV Core-core repulsion = 18990.371052 eV Total energy + Delta-G solvation = -3479.545470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61643 -40.48764 -39.27774 -36.85347 -36.16518 -34.75208 -34.64351 -32.30137 -31.37242 -30.54105 -27.74590 -26.95831 -25.15286 -23.15833 -22.62090 -21.46174 -20.67807 -19.31062 -19.17430 -18.35928 -18.10240 -17.66151 -17.06600 -16.61413 -16.46172 -16.01213 -15.70100 -15.19502 -15.03505 -14.59802 -14.35152 -14.15888 -14.02635 -13.92080 -13.56995 -13.35744 -13.20050 -13.04252 -12.85438 -12.61092 -12.27779 -12.08594 -11.76179 -11.64288 -11.30074 -11.13836 -10.87803 -10.66877 -10.51209 -9.72973 -9.40882 -8.66732 -8.46474 -6.29242 0.88613 1.16973 1.39829 1.46945 1.55915 1.60301 1.65125 2.17118 2.25860 2.66631 2.86306 3.12697 3.72999 3.84306 4.00016 4.15233 4.31728 4.46357 4.52046 4.52696 4.66069 4.76998 4.91729 4.98592 5.04541 5.14443 5.19233 5.36360 5.44799 5.56534 5.72106 5.82206 5.88598 6.07427 6.15923 6.19612 6.40631 6.42339 6.75237 6.99804 7.04561 7.06920 7.32348 7.65713 8.46733 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.003254 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.101193 B = 8602.570771 C = 9534.052938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.626 5.626 3 C 0.149 3.851 4 C -0.149 4.149 5 C 0.521 3.479 6 N -0.837 5.837 7 O -0.594 6.594 8 C 0.689 3.311 9 O -0.624 6.624 10 N -0.656 5.656 11 C 0.040 3.960 12 C -0.109 4.109 13 C -0.166 4.166 14 C 0.063 3.937 15 C -0.496 4.496 16 H 0.079 0.921 17 C 0.021 3.979 18 N -0.849 5.849 19 Si 0.990 3.010 20 H -0.253 1.253 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.208 4.208 24 C -0.109 4.109 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.418 0.582 33 H 0.407 0.593 34 H 0.414 0.586 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.281 0.719 38 H 0.113 0.887 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 14.343 -6.606 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.364 5.364 3 C 0.025 3.975 4 C -0.191 4.191 5 C 0.306 3.694 6 N -0.401 5.401 7 O -0.474 6.474 8 C 0.391 3.609 9 O -0.504 6.504 10 N -0.306 5.306 11 C -0.054 4.054 12 C -0.129 4.129 13 C -0.186 4.186 14 C 0.061 3.939 15 C -0.527 4.527 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.478 5.478 19 Si 0.811 3.189 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.228 4.228 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.249 0.751 33 H 0.239 0.761 34 H 0.254 0.746 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.127 14.663 -5.860 19.910 hybrid contribution 0.711 -0.392 -0.292 0.863 sum -11.416 14.271 -6.151 19.283 Atomic orbital electron populations 1.22086 0.76702 1.05034 1.03339 1.47056 1.08073 1.03311 1.77913 1.20959 0.97310 0.83460 0.95759 1.21972 1.03067 0.94126 0.99889 1.20755 0.78429 0.86446 0.83759 1.43726 1.60195 1.27750 1.08407 1.90746 1.56807 1.66693 1.33201 1.16244 0.85031 0.81487 0.78173 1.90920 1.14087 1.86503 1.58908 1.42012 1.09961 1.02309 1.76333 1.17153 0.95439 0.86353 1.06438 1.20670 0.95494 0.96564 1.00166 1.21155 1.00681 0.94195 1.02608 1.18056 0.92186 0.93968 0.89693 1.19772 0.92168 0.93915 1.46854 0.90253 1.26841 0.98745 1.01282 0.92116 1.69928 1.09390 1.29153 1.39283 0.85033 0.78024 0.77347 0.78450 1.17649 1.19291 1.19640 1.20952 0.98007 0.98135 1.05684 1.20404 1.00610 0.92784 0.99178 0.91476 0.87639 0.90241 0.87779 0.93259 0.89413 0.84857 0.75062 0.76132 0.74637 0.88545 0.87921 0.90899 0.86872 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.24 127.77 1.31 2.20 16 2 N -0.63 -15.25 2.87 -864.94 -2.48 -17.73 16 3 C 0.15 3.61 4.70 86.38 0.41 4.02 16 4 C -0.15 -2.75 6.02 29.85 0.18 -2.57 16 5 C 0.52 10.78 8.10 87.66 0.71 11.49 16 6 N -0.84 -9.87 8.87 -173.53 -1.54 -11.41 16 7 O -0.59 -18.02 16.82 -3.03 -0.05 -18.08 16 8 C 0.69 24.75 8.11 179.05 1.45 26.20 16 9 O -0.62 -29.67 13.34 -3.98 -0.05 -29.72 16 10 N -0.66 -22.15 5.18 -316.78 -1.64 -23.80 16 11 C 0.04 1.78 6.31 38.56 0.24 2.02 16 12 C -0.11 -5.68 8.61 22.13 0.19 -5.49 16 13 C -0.17 -9.51 8.61 22.48 0.19 -9.31 16 14 C 0.06 3.54 5.55 -21.28 -0.12 3.42 16 15 C -0.50 -27.58 9.02 23.39 0.21 -27.37 16 16 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 17 C 0.02 1.12 5.42 85.24 0.46 1.58 16 18 N -0.85 -48.34 10.61 21.82 0.23 -48.11 16 19 Si 0.99 40.53 29.56 68.60 2.03 42.56 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 24 C -0.11 -4.58 9.90 22.13 0.22 -4.37 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.70 8.07 -2.38 -0.02 0.68 16 27 H 0.08 0.85 6.30 -2.39 -0.02 0.83 16 28 H 0.10 2.06 8.03 -2.39 -0.02 2.04 16 29 H 0.05 1.65 7.38 -2.39 -0.02 1.64 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.42 2.27 8.83 -92.71 -0.82 1.45 16 33 H 0.41 4.13 8.93 -92.71 -0.83 3.31 16 34 H 0.41 9.92 6.51 -92.71 -0.60 9.32 16 35 H 0.10 5.19 6.22 -2.91 -0.02 5.18 16 36 H 0.10 6.31 6.15 -2.91 -0.02 6.29 16 37 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 38 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 39 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -82.28 332.02 1.03 -81.25 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -1.13 Total: 32.99 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.68 Total: -7.95 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.44 Total: -101.05 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.10 Total: -47.80 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -82.28 1.03 -81.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287136639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.546 kcal (2) G-P(sol) polarization free energy of solvation -82.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds