Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00089 * 2 1 4 4 N 1.46504 * 109.47353 * 124.99629 * 3 2 1 5 5 C 1.46495 * 120.00329 * 270.00353 * 4 3 2 6 6 C 1.50705 * 109.47024 * 269.99945 * 5 4 3 7 7 H 1.07998 * 119.99404 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99905 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00437 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47254 * 89.99747 * 10 8 6 12 12 H 1.48495 * 109.47643 * 210.00024 * 10 8 6 13 13 H 1.48500 * 109.47127 * 330.00567 * 10 8 6 14 14 C 1.34783 * 119.99807 * 89.99664 * 4 3 2 15 15 O 1.21590 * 119.99665 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99737 * 0.02562 * 14 4 3 17 17 C 1.40179 * 119.99638 * 184.64635 * 16 14 4 18 18 C 1.39366 * 120.42267 * 325.03354 * 17 16 14 19 19 C 1.38335 * 118.42346 * 179.97438 * 18 17 16 20 20 C 1.38895 * 119.18661 * 0.02562 * 19 18 17 21 21 O 1.35762 * 119.61096 * 180.02562 * 20 19 18 22 22 C 1.42891 * 116.99972 * 179.97438 * 21 20 19 23 23 N 1.32199 * 120.78115 * 359.97427 * 20 19 18 24 24 C 1.31954 * 121.72048 * 0.04667 * 23 20 19 25 25 H 1.08001 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00291 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00154 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47090 * 4.99770 * 3 2 1 29 29 H 1.08996 * 109.47540 * 244.99749 * 3 2 1 30 30 H 1.09005 * 109.47078 * 29.99275 * 5 4 3 31 31 H 1.08997 * 109.47371 * 149.99655 * 5 4 3 32 32 H 0.97005 * 119.99923 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00189 * 4.64024 * 16 14 4 34 34 H 1.07999 * 120.79031 * 359.96021 * 18 17 16 35 35 H 1.08004 * 120.40210 * 179.72122 * 19 18 17 36 36 H 1.09000 * 109.47136 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47649 * 300.00227 * 22 21 20 38 38 H 1.09003 * 109.47047 * 60.00535 * 22 21 20 39 39 H 1.07993 * 119.63410 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5184 4.0668 3.6082 9 7 2.7679 5.3572 3.6568 10 14 1.7225 3.2138 5.0671 11 1 2.7777 2.7227 5.9894 12 1 0.8460 4.1741 5.7843 13 1 0.9113 2.0661 4.5874 14 6 4.2497 0.8661 0.9825 15 8 5.0219 0.8888 1.9215 16 7 4.6499 0.3761 -0.2076 17 6 5.9225 -0.1973 -0.3372 18 6 7.0021 0.3105 0.3832 19 6 8.2394 -0.2874 0.2242 20 6 8.3643 -1.3658 -0.6422 21 8 9.5744 -1.9594 -0.8044 22 6 9.6392 -3.0640 -1.7084 23 7 7.3184 -1.8218 -1.3100 24 6 6.1233 -1.2767 -1.1840 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 1.4887 1.6967 2.5459 31 1 3.0989 1.3603 3.2260 32 1 2.5383 5.8660 4.4501 33 1 4.0574 0.4201 -0.9742 34 1 6.8758 1.1509 1.0495 35 1 9.0988 0.0831 0.7634 36 1 10.6601 -3.4441 -1.7452 37 1 8.9695 -3.8531 -1.3667 38 1 9.3376 -2.7372 -2.7036 39 1 5.2923 -1.6761 -1.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291723579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = 12.327317 kcal Electronic energy + Delta-G solvation = -22781.208445 eV Core-core repulsion = 19305.046693 eV Total energy + Delta-G solvation = -3476.161751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85524 -39.71661 -37.84741 -35.98919 -34.59255 -33.19385 -32.35183 -32.03279 -29.69279 -28.08605 -27.11888 -25.67318 -23.56798 -23.37691 -21.92587 -20.22351 -19.49192 -18.40288 -18.00123 -17.09784 -16.97231 -16.65081 -15.99710 -15.31571 -15.03270 -14.58525 -14.45998 -14.24804 -14.00287 -13.77829 -13.27474 -13.16569 -12.97247 -12.63783 -12.37827 -11.99496 -11.90332 -11.69604 -11.42638 -11.26668 -10.99990 -10.57598 -10.40635 -10.17740 -9.84869 -9.66657 -9.57585 -9.36376 -9.18835 -8.61817 -8.04218 -7.66842 -6.11837 -4.11047 1.15329 1.37088 2.24740 2.95614 3.19571 3.27899 3.33854 3.36175 3.55690 3.92397 4.22920 4.34127 4.37057 4.91566 5.01346 5.08732 5.13312 5.20415 5.20947 5.22668 5.31392 5.39741 5.47561 5.66442 5.80942 5.84155 6.00206 6.16770 6.38341 6.47749 6.63119 6.75253 6.81070 6.84436 7.15997 7.25872 7.38062 7.57440 7.82978 8.33549 8.43231 8.90399 9.03098 9.48169 11.01387 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003995 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.345001 B = 7007.776713 C = 8056.876518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.232 3.768 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.568 6.568 16 N -0.688 5.688 17 C 0.096 3.904 18 C -0.042 4.042 19 C -0.167 4.167 20 C 0.290 3.710 21 O -0.311 6.311 22 C 0.042 3.958 23 N -0.523 5.523 24 C 0.103 3.897 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -14.441 -12.443 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.194 4.194 3 C 0.013 3.987 4 N -0.330 5.330 5 C 0.111 3.889 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.404 3.596 15 O -0.445 6.445 16 N -0.339 5.339 17 C -0.002 4.002 18 C -0.070 4.070 19 C -0.188 4.188 20 C 0.111 3.889 21 O -0.219 6.219 22 C -0.053 4.053 23 N -0.246 5.246 24 C -0.056 4.056 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.563 -14.855 -12.001 19.635 hybrid contribution -1.033 0.218 0.788 1.318 sum 3.530 -14.638 -11.212 18.773 Atomic orbital electron populations 1.23863 0.95820 1.01947 0.99946 1.23456 0.96522 0.98947 1.00432 1.20573 0.93215 0.95811 0.89147 1.47210 1.08980 1.63108 1.13696 1.19622 0.94828 0.95003 0.79406 1.21333 1.41303 0.91133 1.03166 0.90704 1.24833 0.95254 0.94712 0.98094 1.69897 1.47655 1.06607 1.29310 0.86873 0.79904 0.79664 0.83393 1.19855 1.21063 1.19025 1.15879 0.83049 0.78467 0.82179 1.90887 1.52621 1.61483 1.39458 1.42762 1.15259 1.63721 1.12179 1.18424 0.85545 0.95360 1.00917 1.21803 0.89291 0.98996 0.96923 1.21041 0.99172 0.97145 1.01416 1.19750 0.84839 0.91524 0.92826 1.86238 1.26329 1.46684 1.62608 1.22782 1.02367 0.87459 0.92721 1.67191 0.99646 1.31839 1.25966 1.22054 0.93746 0.91203 0.98566 0.88116 0.88645 0.87637 0.88693 0.91119 0.94956 0.94378 0.92521 0.75873 0.81926 0.83933 0.88994 0.92537 0.92540 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.17 -2.15 9.85 -36.03 -0.35 -2.51 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.60 -11.64 2.44 -182.18 -0.44 -12.09 16 5 C 0.23 5.49 4.23 -5.19 -0.02 5.46 16 6 C -0.53 -14.79 9.94 -34.44 -0.34 -15.14 16 7 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 10 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 14 C 0.70 13.83 8.14 -86.91 -0.71 13.12 16 15 O -0.57 -13.45 13.40 5.29 0.07 -13.38 16 16 N -0.69 -10.18 5.24 -14.09 -0.07 -10.26 16 17 C 0.10 1.41 6.32 -83.47 -0.53 0.88 16 18 C -0.04 -0.68 8.80 -39.13 -0.34 -1.02 16 19 C -0.17 -2.36 10.03 -39.30 -0.39 -2.76 16 20 C 0.29 4.09 7.49 -17.15 -0.13 3.96 16 21 O -0.31 -3.98 10.48 -19.00 -0.20 -4.18 16 22 C 0.04 0.39 10.38 101.05 1.05 1.44 16 23 N -0.52 -7.13 9.20 -13.18 -0.12 -7.25 16 24 C 0.10 1.30 11.11 -17.35 -0.19 1.10 16 25 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 26 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 27 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.40 4.61 6.52 -40.82 -0.27 4.35 16 34 H 0.16 2.95 6.32 -52.49 -0.33 2.62 16 35 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -33.80 336.29 -6.28 -40.09 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.01 Total: 4.96 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.68 Total: 6.92 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.13 Total: -56.00 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.13 Total: -17.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.80 -6.28 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291723579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.413 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds