Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00089 * 2 1 4 4 N 1.46504 * 109.47353 * 124.99629 * 3 2 1 5 5 C 1.46495 * 120.00329 * 270.00353 * 4 3 2 6 6 C 1.50705 * 109.47024 * 269.99945 * 5 4 3 7 7 H 1.07998 * 119.99404 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99905 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00437 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47254 * 89.99747 * 10 8 6 12 12 H 1.48495 * 109.47643 * 210.00024 * 10 8 6 13 13 H 1.48500 * 109.47127 * 330.00567 * 10 8 6 14 14 C 1.34783 * 119.99807 * 89.99664 * 4 3 2 15 15 O 1.21590 * 119.99665 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99737 * 0.02562 * 14 4 3 17 17 C 1.40179 * 119.99638 * 184.64635 * 16 14 4 18 18 C 1.39366 * 120.42267 * 325.03354 * 17 16 14 19 19 C 1.38335 * 118.42346 * 179.97438 * 18 17 16 20 20 C 1.38895 * 119.18661 * 0.02562 * 19 18 17 21 21 O 1.35762 * 119.61096 * 180.02562 * 20 19 18 22 22 C 1.42891 * 116.99972 * 179.97438 * 21 20 19 23 23 N 1.32199 * 120.78115 * 359.97427 * 20 19 18 24 24 C 1.31954 * 121.72048 * 0.04667 * 23 20 19 25 25 H 1.08001 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00291 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00154 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47090 * 4.99770 * 3 2 1 29 29 H 1.08996 * 109.47540 * 244.99749 * 3 2 1 30 30 H 1.09005 * 109.47078 * 29.99275 * 5 4 3 31 31 H 1.08997 * 109.47371 * 149.99655 * 5 4 3 32 32 H 0.97005 * 119.99923 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00189 * 4.64024 * 16 14 4 34 34 H 1.07999 * 120.79031 * 359.96021 * 18 17 16 35 35 H 1.08004 * 120.40210 * 179.72122 * 19 18 17 36 36 H 1.09000 * 109.47136 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47649 * 300.00227 * 22 21 20 38 38 H 1.09003 * 109.47047 * 60.00535 * 22 21 20 39 39 H 1.07993 * 119.63410 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5184 4.0668 3.6082 9 7 2.7679 5.3572 3.6568 10 14 1.7225 3.2138 5.0671 11 1 2.7777 2.7227 5.9894 12 1 0.8460 4.1741 5.7843 13 1 0.9113 2.0661 4.5874 14 6 4.2497 0.8661 0.9825 15 8 5.0219 0.8888 1.9215 16 7 4.6499 0.3761 -0.2076 17 6 5.9225 -0.1973 -0.3372 18 6 7.0021 0.3105 0.3832 19 6 8.2394 -0.2874 0.2242 20 6 8.3643 -1.3658 -0.6422 21 8 9.5744 -1.9594 -0.8044 22 6 9.6392 -3.0640 -1.7084 23 7 7.3184 -1.8218 -1.3100 24 6 6.1233 -1.2767 -1.1840 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 1.4887 1.6967 2.5459 31 1 3.0989 1.3603 3.2260 32 1 2.5383 5.8660 4.4501 33 1 4.0574 0.4201 -0.9742 34 1 6.8758 1.1509 1.0495 35 1 9.0988 0.0831 0.7634 36 1 10.6601 -3.4441 -1.7452 37 1 8.9695 -3.8531 -1.3667 38 1 9.3376 -2.7372 -2.7036 39 1 5.2923 -1.6761 -1.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291723579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -12.290938 kcal Electronic energy + Delta-G solvation = -22782.275972 eV Core-core repulsion = 19305.046693 eV Total energy + Delta-G solvation = -3477.229279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06187 -41.01244 -38.92862 -37.37022 -35.96860 -34.91034 -33.82913 -33.26766 -31.05448 -29.64346 -28.04066 -26.96435 -24.96389 -24.64238 -23.43005 -21.41192 -20.72818 -19.53238 -19.26542 -19.04378 -18.38990 -17.77995 -16.95229 -16.81709 -16.49998 -15.93044 -15.76641 -15.46681 -15.17556 -15.13352 -14.63718 -14.38313 -14.27828 -14.14276 -13.72772 -13.51587 -13.19182 -12.91911 -12.69895 -12.53574 -12.38482 -12.24431 -11.94191 -11.73034 -11.54693 -11.26026 -10.83961 -10.81384 -10.46196 -10.33332 -9.56676 -8.89401 -8.32192 -6.36987 0.06607 0.20052 1.23679 1.35282 1.38538 1.46549 1.74186 2.11627 2.18956 2.32314 2.76646 2.94852 3.03389 3.34150 3.84485 3.96206 4.03954 4.11800 4.21318 4.36450 4.49316 4.51356 4.60980 4.65818 4.72323 4.82999 4.85918 4.88722 5.06698 5.08060 5.21407 5.45538 5.47681 5.62101 5.72810 5.89720 5.93940 6.24434 6.27500 6.64599 6.74983 6.95093 7.24637 7.55017 8.84613 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003995 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.345001 B = 7007.776713 C = 8056.876518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.185 4.185 3 C 0.131 3.869 4 N -0.603 5.603 5 C 0.244 3.756 6 C -0.534 4.534 7 H 0.030 0.970 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.944 3.056 11 H -0.278 1.278 12 H -0.276 1.276 13 H -0.237 1.237 14 C 0.697 3.303 15 O -0.617 6.617 16 N -0.666 5.666 17 C 0.077 3.923 18 C -0.060 4.060 19 C -0.173 4.173 20 C 0.289 3.711 21 O -0.320 6.320 22 C 0.036 3.964 23 N -0.524 5.524 24 C 0.124 3.876 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.422 0.578 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -17.344 -13.699 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.009 3.991 4 N -0.336 5.336 5 C 0.122 3.878 6 C -0.573 4.573 7 H 0.049 0.951 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.203 1.203 12 H -0.201 1.201 13 H -0.160 1.160 14 C 0.399 3.601 15 O -0.497 6.497 16 N -0.318 5.318 17 C -0.021 4.021 18 C -0.088 4.088 19 C -0.194 4.194 20 C 0.110 3.890 21 O -0.228 6.228 22 C -0.058 4.058 23 N -0.247 5.247 24 C -0.034 4.034 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.263 0.737 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.370 -17.795 -13.348 22.499 hybrid contribution -0.566 1.115 1.038 1.625 sum 2.804 -16.680 -12.310 20.919 Atomic orbital electron populations 1.24087 0.95478 1.03033 0.97602 1.23282 0.96790 0.97875 1.02457 1.20829 0.92770 0.97058 0.88402 1.47140 1.09900 1.62821 1.13751 1.19227 0.95406 0.91886 0.81315 1.21569 1.40406 0.93473 1.01827 0.95123 1.25794 0.95989 0.95312 1.01414 1.70050 1.49458 1.08503 1.30512 0.85767 0.79073 0.79410 0.79025 1.20332 1.20146 1.15992 1.16078 0.82659 0.78420 0.82929 1.90857 1.53930 1.63392 1.41532 1.42366 1.15572 1.62759 1.11100 1.18570 0.84872 0.96589 1.02048 1.21626 0.90878 0.98900 0.97401 1.21089 0.98906 0.97503 1.01934 1.19863 0.85497 0.91254 0.92361 1.86234 1.25585 1.47591 1.63350 1.23069 1.04343 0.86325 0.92104 1.67329 0.99789 1.31769 1.25850 1.22574 0.94382 0.89486 0.96985 0.88140 0.86458 0.86573 0.89801 0.88423 0.93067 0.96217 0.92320 0.73723 0.85091 0.82963 0.86077 0.92496 0.92186 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 14.32 67.78 0.97 -2.17 16 2 C -0.18 -4.05 9.85 25.64 0.25 -3.80 16 3 C 0.13 3.63 5.65 85.63 0.48 4.12 16 4 N -0.60 -23.49 2.44 -848.55 -2.07 -25.56 16 5 C 0.24 11.59 4.23 85.64 0.36 11.95 16 6 C -0.53 -30.78 9.94 25.60 0.25 -30.52 16 7 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 8 C 0.01 0.76 5.47 84.65 0.46 1.22 16 9 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 10 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 14 C 0.70 27.77 8.14 179.05 1.46 29.23 16 15 O -0.62 -30.44 13.40 -4.00 -0.05 -30.50 16 16 N -0.67 -19.10 5.24 -316.76 -1.66 -20.76 16 17 C 0.08 2.20 6.32 38.18 0.24 2.44 16 18 C -0.06 -1.98 8.80 22.56 0.20 -1.78 16 19 C -0.17 -4.96 10.03 22.45 0.23 -4.74 16 20 C 0.29 7.79 7.49 84.80 0.63 8.43 16 21 O -0.32 -7.68 10.48 -90.88 -0.95 -8.64 16 22 C 0.04 0.58 10.38 113.37 1.18 1.76 16 23 N -0.52 -13.07 9.20 -308.45 -2.84 -15.91 16 24 C 0.12 2.81 11.11 84.77 0.94 3.76 16 25 H 0.10 1.93 7.84 -2.91 -0.02 1.91 16 26 H 0.12 1.77 8.06 -2.91 -0.02 1.74 16 27 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.08 2.50 7.72 -2.38 -0.02 2.48 16 29 H 0.10 2.09 6.30 -2.39 -0.02 2.08 16 30 H 0.05 2.24 7.13 -2.38 -0.02 2.22 16 31 H 0.02 1.01 6.85 -2.39 -0.02 1.00 16 32 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 33 H 0.42 8.71 6.52 -92.71 -0.60 8.10 16 34 H 0.13 5.17 6.32 -2.91 -0.02 5.15 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 38 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 39 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -77.01 336.29 2.68 -74.33 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.41 Total: 20.28 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.66 Total: 19.89 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -6.27 Total: -121.16 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.01 Total: -39.13 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -77.01 2.68 -74.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291723579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.039 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds