Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 119.99948 * 2 1 4 4 O 1.21580 * 120.00114 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99775 * 179.97438 * 3 2 1 6 6 C 1.39946 * 119.99927 * 174.62833 * 5 3 2 7 7 C 1.38932 * 120.03195 * 146.99840 * 6 5 3 8 8 C 1.38140 * 120.06732 * 179.97438 * 7 6 5 9 9 C 1.38185 * 120.14280 * 0.02667 * 8 7 6 10 10 C 1.38900 * 120.06494 * 359.95216 * 9 8 7 11 11 N 1.39924 * 120.03438 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00163 * 326.58024 * 11 10 9 13 13 O 1.21294 * 119.99595 * 354.89442 * 12 11 10 14 14 C 1.50695 * 120.00052 * 174.89541 * 12 11 10 15 15 C 1.52998 * 109.46965 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47083 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99903 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99917 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99783 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47057 * 89.99830 * 20 18 16 22 22 H 1.48505 * 109.47110 * 209.99603 * 20 18 16 23 23 H 1.48499 * 109.47185 * 329.99571 * 20 18 16 24 24 C 1.38718 * 120.03467 * 326.72592 * 6 5 3 25 25 H 1.09006 * 109.46718 * 299.99999 * 1 2 3 26 26 H 1.09000 * 109.46920 * 59.99412 * 1 2 3 27 27 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99849 * 180.02562 * 2 1 3 29 29 H 0.97000 * 120.00228 * 354.91186 * 5 3 2 30 30 H 1.07994 * 119.96769 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.93278 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.96529 * 179.97438 * 9 8 7 33 33 H 0.97000 * 120.00164 * 146.57606 * 11 10 9 34 34 H 1.08998 * 109.47072 * 299.99897 * 14 12 11 35 35 H 1.08998 * 109.47005 * 60.00319 * 14 12 11 36 36 H 1.09007 * 109.47113 * 299.99581 * 15 14 12 37 37 H 1.08993 * 109.47433 * 59.99970 * 15 14 12 38 38 H 0.97001 * 119.99495 * 180.02562 * 19 18 16 39 39 H 1.08013 * 120.07036 * 359.97361 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.1865 2.3738 -0.1129 7 6 5.4075 2.5326 0.5306 8 6 6.0992 3.7231 0.4187 9 6 5.5792 4.7597 -0.3327 10 6 4.3591 4.6070 -0.9789 11 7 3.8335 5.6568 -1.7400 12 6 4.0535 6.9339 -1.3694 13 8 4.6271 7.1728 -0.3278 14 6 3.5868 8.0648 -2.2493 15 6 3.9593 9.4007 -1.6031 16 6 3.4921 10.5318 -2.4827 17 1 2.9810 10.3190 -3.4100 18 6 3.7181 11.8381 -2.1040 19 7 4.3409 12.0971 -0.9750 20 14 3.1395 13.2400 -3.1946 21 1 1.7587 13.6287 -2.8103 22 1 4.0462 14.4042 -3.0269 23 1 3.1538 12.8018 -4.6133 24 6 3.6645 3.4104 -0.8726 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9501 -0.8401 -0.0004 29 1 3.9717 0.3304 0.0754 30 1 5.8164 1.7245 1.1189 31 1 7.0480 3.8444 0.9202 32 1 6.1221 5.6894 -0.4180 33 1 3.3107 5.4656 -2.5344 34 1 4.0661 7.9875 -3.2252 35 1 2.5051 8.0084 -2.3702 36 1 3.4803 9.4783 -0.6270 37 1 5.0411 9.4569 -1.4824 38 1 4.4995 13.0162 -0.7084 39 1 2.7177 3.2876 -1.3778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292356900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = -38.762063 kcal Electronic energy + Delta-G solvation = -22025.623286 eV Core-core repulsion = 18547.246133 eV Total energy + Delta-G solvation = -3478.377153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89689 -39.88002 -38.19084 -35.37243 -34.90611 -33.95656 -33.46062 -31.12168 -30.03112 -29.17271 -26.76616 -25.74750 -23.03899 -22.91257 -21.39097 -20.99067 -19.63276 -18.96241 -18.04582 -16.99615 -16.31900 -15.98170 -15.85080 -15.65028 -15.14210 -14.88656 -14.76538 -14.40372 -14.16618 -13.64314 -13.33447 -13.24295 -12.80426 -12.63793 -12.34201 -12.16895 -11.85831 -11.66352 -11.15369 -10.92607 -10.78225 -10.59025 -10.28727 -9.96275 -9.92416 -9.66269 -9.53632 -9.18003 -9.02986 -8.32354 -8.29020 -7.82857 -5.94783 -3.99212 1.34761 1.44062 2.28448 2.83732 3.15591 3.35097 3.39545 3.42186 3.45569 3.84980 3.96637 4.48961 4.77661 4.96060 5.09327 5.16103 5.34868 5.39323 5.40282 5.44133 5.55276 5.59064 5.75409 5.98056 6.11108 6.19939 6.20526 6.29650 6.53204 6.53852 6.61806 6.72874 6.88194 7.20441 7.55100 7.74761 7.77436 7.86135 8.07634 8.20286 8.38585 8.66394 9.08846 9.64298 11.16205 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002792 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.861791 B =10026.993675 C =10870.223712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.748 5.748 3 C 0.698 3.302 4 O -0.565 6.565 5 N -0.684 5.684 6 C 0.177 3.823 7 C -0.171 4.171 8 C -0.080 4.080 9 C -0.138 4.138 10 C 0.180 3.820 11 N -0.685 5.685 12 C 0.510 3.490 13 O -0.512 6.512 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.155 4.155 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.398 0.602 29 H 0.405 0.595 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -29.631 -0.096 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.404 5.404 3 C 0.398 3.602 4 O -0.440 6.440 5 N -0.332 5.332 6 C 0.083 3.917 7 C -0.193 4.193 8 C -0.099 4.099 9 C -0.159 4.159 10 C 0.084 3.916 11 N -0.331 5.331 12 C 0.299 3.701 13 O -0.385 6.385 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.178 4.178 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.231 0.769 29 H 0.240 0.760 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.244 0.756 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.973 -28.270 0.730 28.348 hybrid contribution -0.224 -0.221 -0.815 0.874 sum -2.197 -28.491 -0.085 28.576 Atomic orbital electron populations 1.21448 0.77637 1.02140 1.02682 1.44921 1.08017 1.06896 1.80542 1.15988 0.81488 0.84616 0.78069 1.91011 1.67367 1.29900 1.55722 1.42526 1.04889 1.08668 1.77107 1.17075 0.92277 0.85786 0.96604 1.20704 0.96252 0.99190 1.03149 1.20784 0.99498 0.91908 0.97714 1.21247 0.94577 1.00263 0.99848 1.17641 0.91891 0.87759 0.94356 1.43951 1.54893 1.05191 1.29016 1.21822 0.78207 0.83002 0.87021 1.90686 1.40050 1.83750 1.23980 1.21910 1.01812 0.94547 0.98615 1.18920 0.97835 0.87320 0.96040 1.21207 1.37898 0.91015 1.06436 0.92550 1.25028 0.95226 0.98949 0.95202 1.70001 1.41344 1.19606 1.21852 0.86579 0.78551 0.81908 0.80831 1.20664 1.21225 1.19886 1.20776 1.00982 0.93495 1.02517 0.92105 0.92087 0.90493 0.76912 0.75954 0.86025 0.85382 0.84418 0.75619 0.89765 0.89872 0.95695 0.95695 0.92934 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.70 59.85 0.64 1.25 16 2 N -0.75 -4.88 5.72 -72.07 -0.41 -5.29 16 3 C 0.70 7.60 8.30 -86.92 -0.72 6.88 16 4 O -0.56 -8.95 14.03 5.30 0.07 -8.88 16 5 N -0.68 -6.17 5.35 -14.24 -0.08 -6.24 16 6 C 0.18 2.17 6.28 -83.72 -0.53 1.65 16 7 C -0.17 -1.90 9.96 -39.36 -0.39 -2.29 16 8 C -0.08 -1.01 10.03 -39.64 -0.40 -1.41 16 9 C -0.14 -2.20 8.65 -39.36 -0.34 -2.54 16 10 C 0.18 2.86 6.27 -83.72 -0.53 2.34 16 11 N -0.68 -10.91 5.34 -9.88 -0.05 -10.97 16 12 C 0.51 10.18 7.57 -10.99 -0.08 10.10 16 13 O -0.51 -12.19 13.67 5.55 0.08 -12.11 16 14 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.15 -2.25 8.57 -39.21 -0.34 -2.58 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.40 1.13 8.85 -40.82 -0.36 0.77 16 29 H 0.41 1.97 8.83 -40.82 -0.36 1.61 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.14 2.45 6.41 -52.49 -0.34 2.12 16 33 H 0.41 5.11 8.82 -40.82 -0.36 4.75 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.02 0.74 8.10 -51.92 -0.42 0.32 16 37 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.14 2.04 6.41 -52.48 -0.34 1.70 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -38.32 337.45 -8.05 -46.37 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.10 Total: 4.43 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.37 Total: -2.34 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.20 Total: -49.42 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.15 Total: -20.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.32 -8.05 -46.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292356900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.610 kcal (2) G-P(sol) polarization free energy of solvation -38.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds