Wall clock time and date at job start Tue Mar 31 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 119.99948 * 2 1 4 4 O 1.21580 * 120.00114 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99775 * 179.97438 * 3 2 1 6 6 C 1.39946 * 119.99927 * 174.62833 * 5 3 2 7 7 C 1.38932 * 120.03195 * 146.99840 * 6 5 3 8 8 C 1.38140 * 120.06732 * 179.97438 * 7 6 5 9 9 C 1.38185 * 120.14280 * 0.02667 * 8 7 6 10 10 C 1.38900 * 120.06494 * 359.95216 * 9 8 7 11 11 N 1.39924 * 120.03438 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00163 * 326.58024 * 11 10 9 13 13 O 1.21294 * 119.99595 * 354.89442 * 12 11 10 14 14 C 1.50695 * 120.00052 * 174.89541 * 12 11 10 15 15 C 1.52998 * 109.46965 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47083 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99903 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99917 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99783 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47057 * 89.99830 * 20 18 16 22 22 H 1.48505 * 109.47110 * 209.99603 * 20 18 16 23 23 H 1.48499 * 109.47185 * 329.99571 * 20 18 16 24 24 C 1.38718 * 120.03467 * 326.72592 * 6 5 3 25 25 H 1.09006 * 109.46718 * 299.99999 * 1 2 3 26 26 H 1.09000 * 109.46920 * 59.99412 * 1 2 3 27 27 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99849 * 180.02562 * 2 1 3 29 29 H 0.97000 * 120.00228 * 354.91186 * 5 3 2 30 30 H 1.07994 * 119.96769 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.93278 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.96529 * 179.97438 * 9 8 7 33 33 H 0.97000 * 120.00164 * 146.57606 * 11 10 9 34 34 H 1.08998 * 109.47072 * 299.99897 * 14 12 11 35 35 H 1.08998 * 109.47005 * 60.00319 * 14 12 11 36 36 H 1.09007 * 109.47113 * 299.99581 * 15 14 12 37 37 H 1.08993 * 109.47433 * 59.99970 * 15 14 12 38 38 H 0.97001 * 119.99495 * 180.02562 * 19 18 16 39 39 H 1.08013 * 120.07036 * 359.97361 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.1865 2.3738 -0.1129 7 6 5.4075 2.5326 0.5306 8 6 6.0992 3.7231 0.4187 9 6 5.5792 4.7597 -0.3327 10 6 4.3591 4.6070 -0.9789 11 7 3.8335 5.6568 -1.7400 12 6 4.0535 6.9339 -1.3694 13 8 4.6271 7.1728 -0.3278 14 6 3.5868 8.0648 -2.2493 15 6 3.9593 9.4007 -1.6031 16 6 3.4921 10.5318 -2.4827 17 1 2.9810 10.3190 -3.4100 18 6 3.7181 11.8381 -2.1040 19 7 4.3409 12.0971 -0.9750 20 14 3.1395 13.2400 -3.1946 21 1 1.7587 13.6287 -2.8103 22 1 4.0462 14.4042 -3.0269 23 1 3.1538 12.8018 -4.6133 24 6 3.6645 3.4104 -0.8726 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9501 -0.8401 -0.0004 29 1 3.9717 0.3304 0.0754 30 1 5.8164 1.7245 1.1189 31 1 7.0480 3.8444 0.9202 32 1 6.1221 5.6894 -0.4180 33 1 3.3107 5.4656 -2.5344 34 1 4.0661 7.9875 -3.2252 35 1 2.5051 8.0084 -2.3702 36 1 3.4803 9.4783 -0.6270 37 1 5.0411 9.4569 -1.4824 38 1 4.4995 13.0162 -0.7084 39 1 2.7177 3.2876 -1.3778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292356900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:01 Heat of formation + Delta-G solvation = -68.742090 kcal Electronic energy + Delta-G solvation = -22026.923318 eV Core-core repulsion = 18547.246133 eV Total energy + Delta-G solvation = -3479.677185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88500 -41.16461 -39.37505 -36.48890 -35.69699 -35.57547 -35.12410 -33.08208 -31.12843 -30.33682 -27.74530 -27.37920 -24.53314 -24.02431 -22.76937 -22.08022 -21.07863 -19.80675 -19.09498 -18.85816 -17.71353 -17.23773 -16.97770 -16.73061 -16.54860 -16.44720 -15.85523 -15.59012 -15.29421 -14.98829 -14.56759 -14.31926 -14.18350 -14.08678 -13.68306 -13.30330 -13.05081 -12.93205 -12.84291 -12.71602 -12.48054 -11.94976 -11.88384 -11.66376 -11.32089 -11.29563 -11.12574 -10.71914 -10.57195 -10.20606 -9.37123 -8.92857 -8.18760 -6.32842 0.25219 0.36720 1.41765 1.44793 1.55002 1.55840 1.60977 1.98070 2.13599 2.43525 2.88394 3.14334 3.23791 3.83589 4.02501 4.21830 4.26555 4.40898 4.43578 4.50313 4.53606 4.55875 4.65272 4.67056 4.97711 5.02216 5.20205 5.29488 5.35490 5.42618 5.46692 5.49781 5.60029 5.60777 5.83727 5.93632 6.08686 6.16086 6.44504 6.84901 6.97214 7.17637 7.37248 7.44974 8.94060 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002792 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.861791 B =10026.993675 C =10870.223712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.691 3.309 4 O -0.620 6.620 5 N -0.667 5.667 6 C 0.178 3.822 7 C -0.152 4.152 8 C -0.079 4.079 9 C -0.165 4.165 10 C 0.152 3.848 11 N -0.666 5.666 12 C 0.512 3.488 13 O -0.561 6.561 14 C -0.117 4.117 15 C 0.042 3.958 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.255 1.255 24 C -0.161 4.161 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.118 0.882 28 H 0.419 0.581 29 H 0.429 0.571 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.424 0.576 34 H 0.112 0.888 35 H 0.106 0.894 36 H -0.018 1.018 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -32.529 -1.215 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.384 5.384 3 C 0.391 3.609 4 O -0.499 6.499 5 N -0.317 5.317 6 C 0.082 3.918 7 C -0.173 4.173 8 C -0.098 4.098 9 C -0.186 4.186 10 C 0.057 3.943 11 N -0.313 5.313 12 C 0.302 3.698 13 O -0.438 6.438 14 C -0.156 4.156 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.799 3.201 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.179 1.179 24 C -0.184 4.184 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.256 0.744 29 H 0.268 0.732 30 H 0.183 0.817 31 H 0.171 0.829 32 H 0.126 0.874 33 H 0.263 0.737 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.000 1.000 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.587 -31.314 -0.429 31.424 hybrid contribution -0.029 0.489 -0.397 0.631 sum -2.616 -30.825 -0.826 30.947 Atomic orbital electron populations 1.21591 0.77010 1.04406 1.01272 1.44796 1.08362 1.06520 1.78694 1.16286 0.81851 0.84956 0.77791 1.90985 1.68525 1.32215 1.58206 1.42306 1.04406 1.08662 1.76281 1.17234 0.92698 0.86288 0.95595 1.21097 0.95036 0.99425 1.01743 1.21099 1.00450 0.91542 0.96667 1.21214 0.95128 1.00404 1.01858 1.17794 0.92618 0.88170 0.95725 1.43580 1.54236 1.04023 1.29413 1.21617 0.77719 0.84220 0.86226 1.90669 1.42506 1.84645 1.25984 1.21674 1.03436 0.91447 0.99076 1.18697 0.94927 0.91244 0.94658 1.21701 1.37692 0.91608 1.07126 0.90532 1.26151 0.95162 1.02468 0.96719 1.70182 1.42942 1.20403 1.24223 0.85302 0.77982 0.77557 0.79281 1.19789 1.21081 1.17851 1.20766 1.00666 0.93712 1.03280 0.93676 0.93439 0.86335 0.74371 0.73175 0.81657 0.82926 0.87380 0.73711 0.87019 0.87568 0.99962 0.99503 0.92824 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 10.70 127.77 1.37 2.35 16 2 N -0.73 -7.56 5.72 -500.18 -2.86 -10.42 16 3 C 0.69 13.83 8.30 179.05 1.49 15.32 16 4 O -0.62 -19.55 14.03 -3.97 -0.06 -19.60 16 5 N -0.67 -10.14 5.35 -317.24 -1.70 -11.84 16 6 C 0.18 4.00 6.28 38.13 0.24 4.24 16 7 C -0.15 -2.91 9.96 22.41 0.22 -2.68 16 8 C -0.08 -1.89 10.03 22.23 0.22 -1.67 16 9 C -0.16 -5.42 8.65 22.42 0.19 -5.23 16 10 C 0.15 4.97 6.27 38.13 0.24 5.21 16 11 N -0.67 -21.83 5.34 -303.55 -1.62 -23.45 16 12 C 0.51 21.41 7.57 87.65 0.66 22.08 16 13 O -0.56 -28.68 13.67 -3.07 -0.04 -28.72 16 14 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 15 C 0.04 2.42 4.26 29.85 0.13 2.55 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 17 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 18 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 19 N -0.94 -60.47 13.29 21.45 0.28 -60.18 16 20 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 24 C -0.16 -4.65 8.57 22.51 0.19 -4.45 16 25 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.42 0.79 8.85 -92.70 -0.82 -0.03 16 29 H 0.43 2.39 8.83 -92.71 -0.82 1.57 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.11 4.18 6.41 -2.91 -0.02 4.16 16 33 H 0.42 10.63 8.82 -92.71 -0.82 9.81 16 34 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 35 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 36 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 37 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.13 3.89 6.41 -2.90 -0.02 3.87 16 Total: -1.00 -89.69 337.45 0.51 -89.19 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -1.35 Total: 16.20 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.82 Total: 1.71 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -5.89 Total: -105.90 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.10 Total: -48.33 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -89.69 0.51 -89.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292356900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.443 kcal (2) G-P(sol) polarization free energy of solvation -89.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds