Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99865 * 2 1 4 4 N 1.34775 * 120.00361 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00312 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46861 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46861 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21572 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99877 * 180.02562 * 8 7 6 11 11 C 1.39236 * 119.99636 * 184.29090 * 10 8 7 12 12 C 1.39481 * 119.83681 * 324.69610 * 11 10 8 13 13 C 1.36376 * 120.17073 * 180.29622 * 12 11 10 14 14 C 1.40868 * 119.82553 * 359.49187 * 13 12 11 15 15 C 1.41155 * 120.15840 * 180.25124 * 14 13 12 16 16 H 1.08007 * 119.99826 * 215.00602 * 15 14 13 17 17 C 1.39895 * 120.00481 * 35.01331 * 15 14 13 18 18 N 1.30876 * 119.99949 * 355.53526 * 17 15 14 19 19 Si 1.86794 * 120.00004 * 175.54513 * 17 15 14 20 20 H 1.48500 * 109.47375 * 59.99379 * 19 17 15 21 21 H 1.48503 * 109.47298 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47219 * 299.99325 * 19 17 15 23 23 C 1.40870 * 119.67277 * 0.50490 * 14 13 12 24 24 C 1.36365 * 119.82848 * 359.74277 * 23 14 13 25 25 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46880 * 300.00102 * 1 2 3 27 27 H 1.09003 * 109.46679 * 60.00097 * 1 2 3 28 28 H 0.97008 * 119.99753 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.47348 * 59.99976 * 5 4 2 30 30 H 1.09000 * 109.47122 * 299.99475 * 5 4 2 31 31 H 1.08995 * 109.47617 * 60.00189 * 6 5 4 32 32 H 1.09003 * 109.47473 * 299.99622 * 6 5 4 33 33 H 0.96998 * 119.99997 * 0.02562 * 7 6 5 34 34 H 0.96999 * 119.99776 * 4.28566 * 10 8 7 35 35 H 1.07999 * 119.91387 * 0.03109 * 12 11 10 36 36 H 1.08004 * 120.08495 * 179.69989 * 13 12 11 37 37 H 0.96992 * 120.00204 * 180.02562 * 18 17 15 38 38 H 1.08002 * 120.08147 * 179.71369 * 23 14 13 39 39 H 1.08001 * 119.91706 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6097 -0.0014 7 7 5.6209 -2.6097 -0.0014 8 6 6.2948 -3.7769 -0.0021 9 8 5.6870 -4.8297 -0.0021 10 7 7.6426 -3.7769 -0.0016 11 6 8.3388 -4.9793 -0.0925 12 6 7.8304 -6.1236 0.5219 13 6 8.5097 -7.3035 0.4423 14 6 9.7223 -7.3670 -0.2717 15 6 10.4285 -8.5858 -0.3630 16 1 11.5085 -8.5849 -0.3710 17 6 9.7296 -9.7950 -0.4434 18 7 8.4245 -9.8041 -0.3460 19 14 10.6590 -11.3965 -0.6894 20 1 11.6009 -11.6008 0.4404 21 1 9.6955 -12.5253 -0.7403 22 1 11.4198 -11.3366 -1.9633 23 6 10.2294 -6.2070 -0.8895 24 6 9.5415 -5.0333 -0.7969 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6959 -2.0073 -0.0013 29 1 4.0090 -0.6539 0.8905 30 1 4.0096 -0.6528 -0.8895 31 1 3.7930 -3.1225 -0.8920 32 1 3.7923 -3.1245 0.8879 33 1 6.1059 -1.7696 -0.0002 34 1 8.1275 -2.9392 0.0620 35 1 6.8986 -6.0742 1.0656 36 1 8.1172 -8.1877 0.9226 37 1 7.9399 -10.6425 -0.4013 38 1 11.1609 -6.2472 -1.4346 39 1 9.9291 -4.1430 -1.2697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298466645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -45.424127 kcal Electronic energy + Delta-G solvation = -21643.805385 eV Core-core repulsion = 18165.139343 eV Total energy + Delta-G solvation = -3478.666042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10926 -39.74262 -37.53648 -36.02856 -34.42303 -34.00490 -32.83635 -30.89727 -29.47963 -29.09248 -27.92740 -24.87132 -23.02609 -21.59571 -21.18399 -20.80776 -20.02645 -18.09390 -17.32212 -17.23153 -16.46970 -16.27034 -16.25415 -15.34529 -15.12376 -14.70332 -14.28049 -14.04857 -13.88319 -13.77170 -13.07478 -12.97191 -12.71119 -12.60438 -12.09327 -12.05091 -12.01230 -11.68243 -11.41914 -11.12184 -10.93293 -10.47655 -10.32718 -9.99861 -9.86983 -9.60227 -9.51775 -9.12111 -8.96465 -8.74095 -7.48647 -6.83987 -6.55749 -4.29556 2.27281 2.49953 2.74506 3.08285 3.12081 3.13726 3.18388 3.29559 3.68319 4.01479 4.32452 4.52893 4.64140 4.75631 4.79015 4.79756 5.01163 5.14541 5.39405 5.61785 5.63987 5.69715 5.96549 6.16026 6.38530 6.48051 6.79778 6.84413 7.07719 7.07970 7.17841 7.30978 7.39583 7.68340 7.82383 7.84903 8.04169 8.12768 8.32832 8.46279 8.71083 8.94971 8.97147 9.10218 10.35396 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038970 B = 0.002387 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.328965 B =11725.454802 C =12320.249181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.549 6.549 4 N -0.727 5.727 5 C 0.107 3.893 6 C 0.131 3.869 7 N -0.751 5.751 8 C 0.696 3.304 9 O -0.573 6.573 10 N -0.667 5.667 11 C 0.023 3.977 12 C -0.094 4.094 13 C -0.143 4.143 14 C 0.098 3.902 15 C -0.464 4.464 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.116 4.116 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.405 0.595 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.392 0.608 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.278 0.722 38 H 0.096 0.904 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 14.094 1.095 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.380 5.380 5 C -0.018 4.018 6 C 0.006 3.994 7 N -0.409 5.409 8 C 0.396 3.604 9 O -0.449 6.449 10 N -0.313 5.313 11 C -0.070 4.070 12 C -0.114 4.114 13 C -0.163 4.163 14 C 0.096 3.904 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.436 5.436 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.223 4.223 24 C -0.136 4.136 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.240 0.760 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.995 13.694 1.079 18.237 hybrid contribution 0.546 -0.340 -0.278 0.700 sum -11.450 13.354 0.801 17.609 Atomic orbital electron populations 1.21845 0.91316 1.04437 1.05411 1.20843 0.90723 0.83229 0.75355 1.90740 1.70804 1.31416 1.49639 1.45947 1.07003 1.09244 1.75840 1.21446 0.80410 0.96718 1.03192 1.21139 0.80116 0.95022 1.03155 1.44856 1.06111 1.07632 1.82335 1.15954 0.82208 0.83665 0.78536 1.90942 1.67652 1.29642 1.56640 1.42079 1.03761 1.08922 1.76489 1.17084 0.95865 0.85201 1.08806 1.20666 0.99075 0.92472 0.99183 1.21302 0.97420 0.96408 1.01194 1.17721 0.92238 0.91954 0.88511 1.19428 0.94402 0.90394 1.45274 0.90734 1.25884 0.94935 1.00854 0.92972 1.69782 1.07369 1.28626 1.37828 0.86262 0.79747 0.80226 0.79733 1.19110 1.20473 1.19180 1.20673 1.01887 0.93577 1.06179 1.20053 0.95968 0.97401 1.00210 0.90374 0.88630 0.88632 0.75991 0.90747 0.90747 0.91014 0.91033 0.77200 0.77535 0.87361 0.85235 0.91082 0.88551 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.39 36.01 0.37 -0.40 16 2 C 0.51 4.44 7.94 -10.99 -0.09 4.35 16 3 O -0.55 -7.32 17.10 5.56 0.10 -7.22 16 4 N -0.73 -5.18 5.56 -60.30 -0.33 -5.51 16 5 C 0.11 0.88 5.79 -4.04 -0.02 0.86 16 6 C 0.13 1.31 5.79 -4.04 -0.02 1.29 16 7 N -0.75 -8.91 5.56 -65.23 -0.36 -9.27 16 8 C 0.70 12.19 8.40 -86.91 -0.73 11.46 16 9 O -0.57 -12.73 13.76 5.30 0.07 -12.66 16 10 N -0.67 -11.57 5.31 -14.10 -0.07 -11.65 16 11 C 0.02 0.51 6.31 -83.57 -0.53 -0.02 16 12 C -0.09 -2.35 8.61 -39.79 -0.34 -2.69 16 13 C -0.14 -3.87 8.61 -39.26 -0.34 -4.21 16 14 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 15 C -0.46 -12.45 9.02 -37.86 -0.34 -12.80 16 16 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.74 10.61 55.54 0.59 -21.15 16 19 Si 0.92 19.25 29.56 -169.99 -5.03 14.22 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.20 -4.92 9.74 -39.26 -0.38 -5.31 16 24 C -0.12 -2.53 9.90 -39.79 -0.39 -2.92 16 25 H 0.08 0.18 7.91 -51.93 -0.41 -0.23 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.41 1.87 8.31 -40.82 -0.34 1.53 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 3.44 8.49 -40.82 -0.35 3.09 16 34 H 0.39 5.16 8.83 -40.82 -0.36 4.80 16 35 H 0.11 2.74 6.22 -52.49 -0.33 2.42 16 36 H 0.13 3.66 6.15 -52.48 -0.32 3.34 16 37 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 38 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -34.90 337.26 -8.49 -43.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.50 Total: -6.64 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.18 Total: -47.59 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.17 Total: -19.89 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.90 -8.49 -43.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298466645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.031 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds