Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99865 * 2 1 4 4 N 1.34775 * 120.00361 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00312 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46861 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46861 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21572 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99877 * 180.02562 * 8 7 6 11 11 C 1.39236 * 119.99636 * 184.29090 * 10 8 7 12 12 C 1.39481 * 119.83681 * 324.69610 * 11 10 8 13 13 C 1.36376 * 120.17073 * 180.29622 * 12 11 10 14 14 C 1.40868 * 119.82553 * 359.49187 * 13 12 11 15 15 C 1.41155 * 120.15840 * 180.25124 * 14 13 12 16 16 H 1.08007 * 119.99826 * 215.00602 * 15 14 13 17 17 C 1.39895 * 120.00481 * 35.01331 * 15 14 13 18 18 N 1.30876 * 119.99949 * 355.53526 * 17 15 14 19 19 Si 1.86794 * 120.00004 * 175.54513 * 17 15 14 20 20 H 1.48500 * 109.47375 * 59.99379 * 19 17 15 21 21 H 1.48503 * 109.47298 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47219 * 299.99325 * 19 17 15 23 23 C 1.40870 * 119.67277 * 0.50490 * 14 13 12 24 24 C 1.36365 * 119.82848 * 359.74277 * 23 14 13 25 25 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46880 * 300.00102 * 1 2 3 27 27 H 1.09003 * 109.46679 * 60.00097 * 1 2 3 28 28 H 0.97008 * 119.99753 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.47348 * 59.99976 * 5 4 2 30 30 H 1.09000 * 109.47122 * 299.99475 * 5 4 2 31 31 H 1.08995 * 109.47617 * 60.00189 * 6 5 4 32 32 H 1.09003 * 109.47473 * 299.99622 * 6 5 4 33 33 H 0.96998 * 119.99997 * 0.02562 * 7 6 5 34 34 H 0.96999 * 119.99776 * 4.28566 * 10 8 7 35 35 H 1.07999 * 119.91387 * 0.03109 * 12 11 10 36 36 H 1.08004 * 120.08495 * 179.69989 * 13 12 11 37 37 H 0.96992 * 120.00204 * 180.02562 * 18 17 15 38 38 H 1.08002 * 120.08147 * 179.71369 * 23 14 13 39 39 H 1.08001 * 119.91706 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6097 -0.0014 7 7 5.6209 -2.6097 -0.0014 8 6 6.2948 -3.7769 -0.0021 9 8 5.6870 -4.8297 -0.0021 10 7 7.6426 -3.7769 -0.0016 11 6 8.3388 -4.9793 -0.0925 12 6 7.8304 -6.1236 0.5219 13 6 8.5097 -7.3035 0.4423 14 6 9.7223 -7.3670 -0.2717 15 6 10.4285 -8.5858 -0.3630 16 1 11.5085 -8.5849 -0.3710 17 6 9.7296 -9.7950 -0.4434 18 7 8.4245 -9.8041 -0.3460 19 14 10.6590 -11.3965 -0.6894 20 1 11.6009 -11.6008 0.4404 21 1 9.6955 -12.5253 -0.7403 22 1 11.4198 -11.3366 -1.9633 23 6 10.2294 -6.2070 -0.8895 24 6 9.5415 -5.0333 -0.7969 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6959 -2.0073 -0.0013 29 1 4.0090 -0.6539 0.8905 30 1 4.0096 -0.6528 -0.8895 31 1 3.7930 -3.1225 -0.8920 32 1 3.7923 -3.1245 0.8879 33 1 6.1059 -1.7696 -0.0002 34 1 8.1275 -2.9392 0.0620 35 1 6.8986 -6.0742 1.0656 36 1 8.1172 -8.1877 0.9226 37 1 7.9399 -10.6425 -0.4013 38 1 11.1609 -6.2472 -1.4346 39 1 9.9291 -4.1430 -1.2697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298466645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -72.148691 kcal Electronic energy + Delta-G solvation = -21644.964249 eV Core-core repulsion = 18165.139343 eV Total energy + Delta-G solvation = -3479.824906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44423 -40.60367 -39.26241 -37.07262 -36.09327 -35.11221 -34.54960 -31.69013 -31.34493 -30.66477 -28.91064 -26.63691 -24.03721 -23.17350 -22.78711 -21.85215 -21.42557 -19.46084 -19.18670 -18.36000 -17.68289 -17.17265 -17.07703 -16.89165 -16.32982 -15.96448 -15.71324 -15.41902 -15.28425 -14.73722 -14.54121 -14.43226 -13.93088 -13.66893 -13.29325 -13.27849 -13.25899 -12.85300 -12.83428 -12.75229 -12.63330 -12.29160 -11.79325 -11.69976 -11.33862 -11.06536 -10.90734 -10.53839 -10.24701 -10.11867 -9.41512 -8.68284 -8.46513 -6.29301 0.88808 1.16749 1.40060 1.48357 1.52697 1.57655 1.61388 2.18592 2.26081 2.41833 2.85529 3.42987 3.61100 3.72928 3.99250 4.01212 4.37652 4.46735 4.51876 4.52694 4.67919 4.82144 4.82501 5.02083 5.10015 5.14195 5.19021 5.30199 5.36311 5.42836 5.46638 5.72653 5.81772 6.11678 6.17456 6.19536 6.40855 6.51017 6.74681 6.99424 7.06275 7.13445 7.20824 7.64726 8.46419 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038970 B = 0.002387 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.328965 B =11725.454802 C =12320.249181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.718 5.718 5 C 0.118 3.882 6 C 0.135 3.865 7 N -0.727 5.727 8 C 0.694 3.306 9 O -0.622 6.622 10 N -0.657 5.657 11 C 0.040 3.960 12 C -0.108 4.108 13 C -0.167 4.167 14 C 0.063 3.937 15 C -0.497 4.497 16 H 0.079 0.921 17 C 0.021 3.979 18 N -0.848 5.848 19 Si 0.990 3.010 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.208 4.208 24 C -0.110 4.110 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.419 0.581 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.416 0.584 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.281 0.719 38 H 0.112 0.888 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 15.556 0.393 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.482 6.482 4 N -0.372 5.372 5 C -0.007 4.007 6 C 0.010 3.990 7 N -0.386 5.386 8 C 0.394 3.606 9 O -0.502 6.502 10 N -0.305 5.305 11 C -0.054 4.054 12 C -0.129 4.129 13 C -0.187 4.187 14 C 0.060 3.940 15 C -0.528 4.528 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.476 5.476 19 Si 0.811 3.189 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.228 4.228 24 C -0.130 4.130 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.256 0.744 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.254 0.746 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.069 15.228 0.385 19.435 hybrid contribution 0.462 -0.605 -0.042 0.763 sum -11.607 14.623 0.343 18.673 Atomic orbital electron populations 1.21878 0.87963 1.06456 1.06010 1.21596 0.92335 0.82506 0.74015 1.90716 1.72109 1.33202 1.52203 1.45921 1.06593 1.09792 1.74901 1.21257 0.81220 0.95076 1.03169 1.21185 0.78727 0.96181 1.02866 1.44610 1.06893 1.06750 1.80303 1.16131 0.82091 0.84302 0.78073 1.90926 1.68592 1.32005 1.58712 1.41833 1.03936 1.08427 1.76353 1.17113 0.95807 0.85911 1.06552 1.20678 0.98815 0.93297 1.00086 1.21167 0.98527 0.96434 1.02601 1.18067 0.92749 0.93457 0.89710 1.19721 0.94767 0.91357 1.46972 0.90288 1.26840 0.95699 1.04348 0.92115 1.69907 1.09026 1.29629 1.39039 0.85128 0.78359 0.75450 0.79931 1.18220 1.19841 1.18430 1.20943 1.02576 0.93563 1.05720 1.20415 0.95131 0.98246 0.99188 0.87687 0.87945 0.87970 0.74378 0.90746 0.90838 0.91434 0.91264 0.74880 0.74633 0.88401 0.87817 0.90811 0.86951 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.39 71.24 0.74 -0.36 16 2 C 0.51 8.02 7.94 87.66 0.70 8.71 16 3 O -0.60 -15.65 17.10 -3.03 -0.05 -15.71 16 4 N -0.72 -8.89 5.56 -463.07 -2.57 -11.46 16 5 C 0.12 1.72 5.79 86.38 0.50 2.22 16 6 C 0.14 2.47 5.79 86.38 0.50 2.97 16 7 N -0.73 -15.63 5.56 -478.54 -2.66 -18.29 16 8 C 0.69 23.27 8.40 179.05 1.50 24.78 16 9 O -0.62 -27.71 13.76 -3.94 -0.05 -27.77 16 10 N -0.66 -21.31 5.31 -316.78 -1.68 -22.99 16 11 C 0.04 1.74 6.31 38.57 0.24 1.98 16 12 C -0.11 -5.57 8.61 22.13 0.19 -5.38 16 13 C -0.17 -9.45 8.61 22.48 0.19 -9.25 16 14 C 0.06 3.46 5.55 -21.28 -0.12 3.35 16 15 C -0.50 -27.42 9.02 23.39 0.21 -27.21 16 16 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 17 C 0.02 1.11 5.42 85.24 0.46 1.58 16 18 N -0.85 -47.53 10.61 21.82 0.23 -47.30 16 19 Si 0.99 40.01 29.56 68.60 2.03 42.04 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 24 C -0.11 -4.53 9.90 22.13 0.22 -4.31 16 25 H 0.10 0.13 7.91 -2.39 -0.02 0.11 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.42 2.93 8.31 -92.70 -0.77 2.16 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.41 5.91 8.49 -92.71 -0.79 5.12 16 34 H 0.42 9.44 8.83 -92.71 -0.82 8.62 16 35 H 0.10 5.16 6.22 -2.91 -0.02 5.15 16 36 H 0.10 6.29 6.15 -2.91 -0.02 6.27 16 37 H 0.28 14.50 8.30 -92.71 -0.77 13.73 16 38 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -79.72 337.26 -0.47 -80.18 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -1.27 Total: 31.93 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.56 Total: -10.64 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -6.68 Total: -100.04 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.11 Total: -43.47 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -79.72 -0.47 -80.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298466645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.036 kcal (2) G-P(sol) polarization free energy of solvation -79.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds