Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99439 * 2 1 4 4 O 1.21280 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47363 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47304 * 180.02562 * 6 5 3 8 8 C 1.34775 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21581 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99660 * 179.97438 * 8 7 6 11 11 C 1.39238 * 119.99647 * 184.29115 * 10 8 7 12 12 C 1.39490 * 119.83647 * 324.69823 * 11 10 8 13 13 C 1.36364 * 120.17166 * 180.30102 * 12 11 10 14 14 C 1.40873 * 119.82804 * 359.47909 * 13 12 11 15 15 C 1.41159 * 120.16700 * 180.25259 * 14 13 12 16 16 H 1.07994 * 120.00020 * 215.02006 * 15 14 13 17 17 C 1.39893 * 119.99767 * 35.01581 * 15 14 13 18 18 N 1.30880 * 119.99961 * 355.54049 * 17 15 14 19 19 Si 1.86796 * 119.99962 * 175.54569 * 17 15 14 20 20 H 1.48496 * 109.47393 * 90.00331 * 19 17 15 21 21 H 1.48502 * 109.47160 * 209.99900 * 19 17 15 22 22 H 1.48496 * 109.47164 * 329.99543 * 19 17 15 23 23 C 1.40875 * 119.67207 * 0.52306 * 14 13 12 24 24 C 1.36367 * 119.82519 * 359.72935 * 23 14 13 25 25 H 1.08991 * 109.47713 * 60.00556 * 1 2 3 26 26 H 1.09007 * 109.46827 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47196 * 299.99664 * 1 2 3 28 28 H 0.96997 * 120.00244 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47256 * 59.99657 * 5 3 2 30 30 H 1.09003 * 109.46648 * 299.99817 * 5 3 2 31 31 H 1.09001 * 109.47538 * 59.99286 * 6 5 3 32 32 H 1.09003 * 109.47064 * 299.99531 * 6 5 3 33 33 H 0.96997 * 119.99714 * 359.97438 * 7 6 5 34 34 H 0.96999 * 120.00338 * 4.28557 * 10 8 7 35 35 H 1.07999 * 119.90930 * 0.02712 * 12 11 10 36 36 H 1.07999 * 120.08778 * 179.70269 * 13 12 11 37 37 H 0.97001 * 119.99957 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.08670 * 179.70906 * 23 14 13 39 39 H 1.08005 * 119.91570 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1557 2.6099 0.0002 7 7 5.6207 2.6100 -0.0010 8 6 6.2945 3.7773 -0.0011 9 8 5.6865 4.8302 -0.0007 10 7 7.6423 3.7773 -0.0017 11 6 8.3384 4.9798 0.0884 12 6 7.8298 6.1239 -0.5265 13 6 8.5090 7.3038 -0.4478 14 6 9.7217 7.3679 0.2662 15 6 10.4279 8.5867 0.3567 16 1 11.5078 8.5858 0.3645 17 6 9.7289 9.7959 0.4363 18 7 8.4237 9.8049 0.3390 19 14 10.6582 11.3976 0.6813 20 1 11.0089 11.9739 -0.6416 21 1 9.8044 12.3561 1.4280 22 1 11.9001 11.1364 1.4524 23 6 10.2290 6.2082 0.8845 24 6 9.5411 5.0344 0.7927 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 4.0088 0.6538 -0.8907 30 1 4.0094 0.6534 0.8892 31 1 3.7926 3.1232 0.8906 32 1 3.7920 3.1243 -0.8894 33 1 6.1057 1.7700 -0.0017 34 1 8.1273 2.9397 -0.0648 35 1 6.8979 6.0740 -1.0702 36 1 8.1164 8.1876 -0.9285 37 1 7.9390 10.6432 0.3946 38 1 11.1605 6.2487 1.4296 39 1 9.9286 4.1445 1.2666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298721863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = -43.570823 kcal Electronic energy + Delta-G solvation = -21771.473143 eV Core-core repulsion = 18292.887466 eV Total energy + Delta-G solvation = -3478.585677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15604 -39.65493 -37.41986 -35.26498 -34.86597 -34.23956 -32.84969 -31.13909 -29.40289 -28.75675 -27.19139 -24.93552 -23.37802 -21.41019 -20.97982 -20.82630 -19.96623 -18.11584 -17.33538 -17.20518 -16.61489 -16.28557 -16.04649 -15.21261 -15.02538 -14.72589 -14.12024 -13.95850 -13.80504 -13.62354 -13.10887 -12.82621 -12.70342 -12.58839 -12.04058 -12.00209 -11.81500 -11.55709 -11.37163 -11.10410 -10.85623 -10.42958 -10.26506 -9.91676 -9.80517 -9.53673 -9.52529 -9.02967 -8.84191 -8.67678 -7.43354 -6.78357 -6.50872 -4.24763 2.30887 2.62926 2.79346 3.12373 3.15844 3.17231 3.21598 3.27959 3.78631 4.05453 4.33759 4.59800 4.73868 4.75561 4.81236 4.88043 5.11479 5.12205 5.41838 5.73497 5.79385 5.91634 6.01295 6.20055 6.45105 6.60606 6.87688 6.91863 7.04532 7.13004 7.23527 7.36754 7.46388 7.73620 7.86266 7.91217 8.10876 8.17882 8.38387 8.54977 8.76352 9.01698 9.02716 9.18815 10.40263 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.002516 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.846404 B =11125.024520 C =11794.038851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.739 5.739 3 C 0.515 3.485 4 O -0.528 6.528 5 C -0.152 4.152 6 C 0.155 3.845 7 N -0.755 5.755 8 C 0.693 3.307 9 O -0.569 6.569 10 N -0.669 5.669 11 C 0.025 3.975 12 C -0.094 4.094 13 C -0.143 4.143 14 C 0.098 3.902 15 C -0.464 4.464 16 H 0.074 0.926 17 C 0.068 3.932 18 N -0.808 5.808 19 Si 0.915 3.085 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.203 4.203 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.390 0.610 34 H 0.390 0.610 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.278 0.722 38 H 0.096 0.904 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -21.424 -1.102 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.392 5.392 3 C 0.301 3.699 4 O -0.404 6.404 5 C -0.192 4.192 6 C 0.030 3.970 7 N -0.413 5.413 8 C 0.394 3.606 9 O -0.445 6.445 10 N -0.315 5.315 11 C -0.068 4.068 12 C -0.114 4.114 13 C -0.163 4.163 14 C 0.095 3.905 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.147 4.147 18 N -0.436 5.436 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.223 4.223 24 C -0.138 4.138 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.223 0.777 34 H 0.223 0.777 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.306 -19.480 -1.083 22.065 hybrid contribution 0.930 -0.671 0.274 1.179 sum -9.376 -20.151 -0.809 22.240 Atomic orbital electron populations 1.21545 0.79501 1.02179 1.02554 1.45803 1.07894 1.08692 1.76783 1.20489 0.89905 0.83687 0.75843 1.90786 1.70390 1.31125 1.48060 1.21808 0.92445 0.99917 1.05059 1.20762 0.78421 0.93806 1.04015 1.45059 1.06639 1.07259 1.82351 1.15995 0.82116 0.83870 0.78627 1.90963 1.67584 1.29689 1.56253 1.42090 1.03826 1.08765 1.76812 1.17091 0.95790 0.85279 1.08600 1.20689 0.99079 0.92495 0.99177 1.21308 0.97390 0.96414 1.01152 1.17725 0.92256 0.91960 0.88559 1.19445 0.94383 0.90382 1.45319 0.90739 1.25886 0.94922 1.00846 0.93035 1.69798 1.07348 1.28501 1.37906 0.86217 0.80044 0.80754 0.79024 1.19599 1.20362 1.18835 1.20663 1.01872 0.93593 1.06212 1.20042 0.96034 0.97371 1.00311 0.92122 0.90674 0.92130 0.76453 0.88138 0.88139 0.90821 0.90845 0.77671 0.77697 0.87309 0.85242 0.91132 0.88598 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.85 0.64 1.12 16 2 N -0.74 -4.39 5.71 -67.08 -0.38 -4.78 16 3 C 0.52 4.92 7.83 -10.98 -0.09 4.83 16 4 O -0.53 -7.77 15.98 5.56 0.09 -7.69 16 5 C -0.15 -1.08 5.81 -27.88 -0.16 -1.24 16 6 C 0.15 1.92 4.96 -4.04 -0.02 1.90 16 7 N -0.76 -9.51 5.56 -65.23 -0.36 -9.87 16 8 C 0.69 12.90 8.39 -86.92 -0.73 12.17 16 9 O -0.57 -13.68 13.76 5.29 0.07 -13.61 16 10 N -0.67 -11.97 5.31 -14.10 -0.07 -12.04 16 11 C 0.03 0.57 6.31 -83.57 -0.53 0.04 16 12 C -0.09 -2.44 8.61 -39.79 -0.34 -2.78 16 13 C -0.14 -3.95 8.61 -39.26 -0.34 -4.29 16 14 C 0.10 2.68 5.55 -106.79 -0.59 2.09 16 15 C -0.46 -12.69 9.02 -37.85 -0.34 -13.03 16 16 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 18 N -0.81 -22.28 10.61 55.54 0.59 -21.69 16 19 Si 0.91 19.65 29.56 -169.99 -5.03 14.62 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.20 -5.01 9.74 -39.26 -0.38 -5.40 16 24 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.40 0.99 8.83 -40.82 -0.36 0.63 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.39 3.24 8.49 -40.82 -0.35 2.89 16 34 H 0.39 5.21 8.83 -40.82 -0.36 4.85 16 35 H 0.11 2.88 6.22 -52.49 -0.33 2.55 16 36 H 0.13 3.76 6.15 -52.49 -0.32 3.44 16 37 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -36.62 336.37 -8.46 -45.08 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.06 Total: 10.79 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.37 Total: -5.88 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.23 Total: -48.38 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.16 Total: -21.30 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.62 -8.46 -45.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298721863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.506 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds