Wall clock time and date at job start Tue Mar 31 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99439 * 2 1 4 4 O 1.21280 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47363 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47304 * 180.02562 * 6 5 3 8 8 C 1.34775 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21581 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99660 * 179.97438 * 8 7 6 11 11 C 1.39238 * 119.99647 * 184.29115 * 10 8 7 12 12 C 1.39490 * 119.83647 * 324.69823 * 11 10 8 13 13 C 1.36364 * 120.17166 * 180.30102 * 12 11 10 14 14 C 1.40873 * 119.82804 * 359.47909 * 13 12 11 15 15 C 1.41159 * 120.16700 * 180.25259 * 14 13 12 16 16 H 1.07994 * 120.00020 * 215.02006 * 15 14 13 17 17 C 1.39893 * 119.99767 * 35.01581 * 15 14 13 18 18 N 1.30880 * 119.99961 * 355.54049 * 17 15 14 19 19 Si 1.86796 * 119.99962 * 175.54569 * 17 15 14 20 20 H 1.48496 * 109.47393 * 90.00331 * 19 17 15 21 21 H 1.48502 * 109.47160 * 209.99900 * 19 17 15 22 22 H 1.48496 * 109.47164 * 329.99543 * 19 17 15 23 23 C 1.40875 * 119.67207 * 0.52306 * 14 13 12 24 24 C 1.36367 * 119.82519 * 359.72935 * 23 14 13 25 25 H 1.08991 * 109.47713 * 60.00556 * 1 2 3 26 26 H 1.09007 * 109.46827 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47196 * 299.99664 * 1 2 3 28 28 H 0.96997 * 120.00244 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47256 * 59.99657 * 5 3 2 30 30 H 1.09003 * 109.46648 * 299.99817 * 5 3 2 31 31 H 1.09001 * 109.47538 * 59.99286 * 6 5 3 32 32 H 1.09003 * 109.47064 * 299.99531 * 6 5 3 33 33 H 0.96997 * 119.99714 * 359.97438 * 7 6 5 34 34 H 0.96999 * 120.00338 * 4.28557 * 10 8 7 35 35 H 1.07999 * 119.90930 * 0.02712 * 12 11 10 36 36 H 1.07999 * 120.08778 * 179.70269 * 13 12 11 37 37 H 0.97001 * 119.99957 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.08670 * 179.70906 * 23 14 13 39 39 H 1.08005 * 119.91570 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1557 2.6099 0.0002 7 7 5.6207 2.6100 -0.0010 8 6 6.2945 3.7773 -0.0011 9 8 5.6865 4.8302 -0.0007 10 7 7.6423 3.7773 -0.0017 11 6 8.3384 4.9798 0.0884 12 6 7.8298 6.1239 -0.5265 13 6 8.5090 7.3038 -0.4478 14 6 9.7217 7.3679 0.2662 15 6 10.4279 8.5867 0.3567 16 1 11.5078 8.5858 0.3645 17 6 9.7289 9.7959 0.4363 18 7 8.4237 9.8049 0.3390 19 14 10.6582 11.3976 0.6813 20 1 11.0089 11.9739 -0.6416 21 1 9.8044 12.3561 1.4280 22 1 11.9001 11.1364 1.4524 23 6 10.2290 6.2082 0.8845 24 6 9.5411 5.0344 0.7927 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 4.0088 0.6538 -0.8907 30 1 4.0094 0.6534 0.8892 31 1 3.7926 3.1232 0.8906 32 1 3.7920 3.1243 -0.8894 33 1 6.1057 1.7700 -0.0017 34 1 8.1273 2.9397 -0.0648 35 1 6.8979 6.0740 -1.0702 36 1 8.1164 8.1876 -0.9285 37 1 7.9390 10.6432 0.3946 38 1 11.1605 6.2487 1.4296 39 1 9.9286 4.1445 1.2666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298721863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:36 Heat of formation + Delta-G solvation = -73.040968 kcal Electronic energy + Delta-G solvation = -21772.751064 eV Core-core repulsion = 18292.887466 eV Total energy + Delta-G solvation = -3479.863598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44824 -40.69875 -39.22624 -36.53553 -35.96387 -35.61490 -34.67836 -32.21114 -31.35583 -30.53221 -27.96624 -26.66658 -24.46881 -23.18642 -22.73289 -21.79397 -21.36001 -19.49309 -19.18516 -18.28272 -18.05261 -17.17728 -16.98322 -16.79403 -16.30074 -16.03013 -15.71062 -15.38159 -15.11867 -14.68524 -14.57574 -14.33818 -13.91891 -13.81162 -13.58881 -13.28753 -13.14687 -12.85689 -12.84205 -12.65628 -12.44826 -12.28862 -11.79715 -11.67965 -11.34851 -11.06890 -10.89663 -10.53704 -10.18379 -10.08551 -9.41449 -8.67682 -8.46498 -6.29479 0.88766 1.16925 1.39334 1.47515 1.55056 1.60054 1.64754 2.20634 2.25971 2.39197 2.85644 3.41886 3.65567 3.73054 4.05194 4.09538 4.46841 4.47755 4.52165 4.56250 4.61461 4.86619 4.89468 4.96648 5.04316 5.14972 5.19729 5.36913 5.42084 5.43699 5.46783 5.74170 5.83888 6.12665 6.18193 6.23488 6.40956 6.54756 6.74931 6.99188 7.06762 7.21296 7.27057 7.69368 8.46532 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.002516 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.846404 B =11125.024520 C =11794.038851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.719 5.719 3 C 0.508 3.492 4 O -0.594 6.594 5 C -0.133 4.133 6 C 0.155 3.845 7 N -0.722 5.722 8 C 0.688 3.312 9 O -0.630 6.630 10 N -0.654 5.654 11 C 0.041 3.959 12 C -0.112 4.112 13 C -0.168 4.168 14 C 0.062 3.938 15 C -0.496 4.496 16 H 0.081 0.919 17 C 0.019 3.981 18 N -0.850 5.850 19 Si 0.992 3.008 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.207 4.207 24 C -0.107 4.107 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.045 0.955 28 H 0.423 0.577 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.419 0.581 34 H 0.418 0.582 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.281 0.719 38 H 0.115 0.885 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -25.132 -0.270 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.294 3.706 4 O -0.474 6.474 5 C -0.173 4.173 6 C 0.030 3.970 7 N -0.380 5.380 8 C 0.388 3.612 9 O -0.510 6.510 10 N -0.303 5.303 11 C -0.053 4.053 12 C -0.132 4.132 13 C -0.189 4.189 14 C 0.060 3.940 15 C -0.527 4.527 16 H 0.099 0.901 17 C -0.192 4.192 18 N -0.479 5.479 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.177 1.177 23 C -0.226 4.226 24 C -0.128 4.128 25 H 0.064 0.936 26 H 0.132 0.868 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.257 0.743 34 H 0.256 0.744 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.873 -23.373 -0.259 25.002 hybrid contribution 0.374 0.246 -0.005 0.448 sum -8.499 -23.127 -0.264 24.641 Atomic orbital electron populations 1.21658 0.79234 1.04258 1.01131 1.45680 1.08191 1.08649 1.74693 1.20963 0.90976 0.83633 0.74979 1.90774 1.71717 1.33556 1.51347 1.21716 0.90539 0.96359 1.08652 1.20697 0.77817 0.97305 1.01198 1.44666 1.06670 1.06603 1.80099 1.16276 0.82188 0.84546 0.78151 1.90947 1.68783 1.32555 1.58677 1.41784 1.03689 1.08391 1.76429 1.17127 0.95834 0.85926 1.06445 1.20681 0.98670 0.93593 1.00260 1.21158 0.98663 0.96314 1.02720 1.18078 0.92643 0.93603 0.89721 1.19750 0.94802 0.91277 1.46848 0.90101 1.26888 0.95665 1.04520 0.92142 1.69938 1.09154 1.29522 1.39254 0.85056 0.78690 0.75723 0.79262 1.18717 1.19956 1.17729 1.20956 1.02605 0.93477 1.05605 1.20423 0.94943 0.98354 0.99051 0.93609 0.86765 0.93643 0.73912 0.84341 0.84409 0.93951 0.93824 0.74325 0.74380 0.88933 0.88061 0.90908 0.86709 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.15 16 2 N -0.72 -6.69 5.71 -484.52 -2.77 -9.46 16 3 C 0.51 8.98 7.83 87.66 0.69 9.67 16 4 O -0.59 -18.12 15.98 -3.03 -0.05 -18.17 16 5 C -0.13 -1.45 5.81 29.85 0.17 -1.28 16 6 C 0.16 3.74 4.96 86.38 0.43 4.17 16 7 N -0.72 -16.44 5.56 -478.54 -2.66 -19.10 16 8 C 0.69 24.94 8.39 179.05 1.50 26.45 16 9 O -0.63 -31.30 13.76 -3.97 -0.05 -31.35 16 10 N -0.65 -21.82 5.31 -316.78 -1.68 -23.50 16 11 C 0.04 1.82 6.31 38.57 0.24 2.07 16 12 C -0.11 -6.00 8.61 22.13 0.19 -5.81 16 13 C -0.17 -9.86 8.61 22.48 0.19 -9.66 16 14 C 0.06 3.50 5.55 -21.27 -0.12 3.39 16 15 C -0.50 -27.85 9.02 23.39 0.21 -27.64 16 16 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 17 C 0.02 1.01 5.42 85.24 0.46 1.47 16 18 N -0.85 -49.32 10.61 21.82 0.23 -49.09 16 19 Si 0.99 41.05 29.56 68.60 2.03 43.08 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.21 -9.98 9.74 22.48 0.22 -9.76 16 24 C -0.11 -4.49 9.90 22.13 0.22 -4.27 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.42 0.29 8.83 -92.71 -0.82 -0.53 16 29 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 1.30 8.10 -2.39 -0.02 1.29 16 32 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.42 4.95 8.49 -92.71 -0.79 4.16 16 34 H 0.42 9.29 8.83 -92.71 -0.82 8.47 16 35 H 0.09 5.21 6.22 -2.91 -0.02 5.19 16 36 H 0.10 6.38 6.15 -2.91 -0.02 6.37 16 37 H 0.28 14.98 8.30 -92.71 -0.77 14.21 16 38 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -88.92 336.37 -0.49 -89.41 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -1.31 Total: 27.23 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.78 Total: -9.06 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -6.88 Total: -101.15 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.10 Total: -49.52 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -88.92 -0.49 -89.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298721863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.369 kcal (2) G-P(sol) polarization free energy of solvation -88.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds