Wall clock time and date at job start Tue Mar 31 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00348 * 2 1 4 4 C 1.53004 * 109.47247 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47131 * 64.99803 * 4 3 2 6 6 C 1.46505 * 120.00090 * 90.00359 * 5 4 3 7 7 C 1.50690 * 109.47247 * 90.39446 * 6 5 4 8 8 H 1.08005 * 120.00309 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00131 * 180.27722 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.72776 * 9 7 6 11 11 Si 1.86806 * 120.00241 * 179.72879 * 9 7 6 12 12 H 1.48491 * 109.46910 * 89.99790 * 11 9 7 13 13 H 1.48499 * 109.46884 * 209.99873 * 11 9 7 14 14 H 1.48504 * 109.46601 * 329.99911 * 11 9 7 15 15 C 1.34778 * 120.00393 * 269.99969 * 5 4 3 16 16 O 1.21287 * 119.99680 * 5.03124 * 15 5 4 17 17 C 1.50692 * 120.00359 * 185.02808 * 15 5 4 18 18 H 1.09002 * 110.01734 * 24.65404 * 17 15 5 19 19 C 1.53874 * 110.03524 * 146.04409 * 17 15 5 20 20 C 1.54267 * 106.59992 * 119.28644 * 19 17 15 21 21 C 1.54889 * 104.19486 * 23.61306 * 20 19 17 22 22 F 1.39891 * 110.75814 * 80.37370 * 21 20 19 23 23 F 1.39906 * 110.75354 * 203.74531 * 21 20 19 24 24 C 1.54265 * 110.03569 * 263.21252 * 17 15 5 25 25 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46816 * 300.00468 * 1 2 3 27 27 H 1.09005 * 109.46535 * 60.00284 * 1 2 3 28 28 H 1.08995 * 109.46624 * 59.99847 * 3 2 1 29 29 H 1.09002 * 109.47214 * 300.00109 * 3 2 1 30 30 H 1.08997 * 109.46737 * 305.00134 * 4 3 2 31 31 H 1.08999 * 109.46973 * 185.00341 * 4 3 2 32 32 H 1.09002 * 109.46777 * 330.39568 * 6 5 4 33 33 H 1.08999 * 109.47267 * 210.40001 * 6 5 4 34 34 H 0.96993 * 120.00170 * 180.02562 * 10 9 7 35 35 H 1.08996 * 110.03859 * 238.57230 * 19 17 15 36 36 H 1.09006 * 110.03078 * 359.95455 * 19 17 15 37 37 H 1.08994 * 110.48914 * 142.29278 * 20 19 17 38 38 H 1.09004 * 110.48754 * 264.93667 * 20 19 17 39 39 H 1.08997 * 110.48574 * 335.78404 * 24 17 15 40 40 H 1.09008 * 110.48726 * 98.42332 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.2866 1.4005 -2.4148 7 6 5.7465 1.7727 -2.3897 8 1 6.3798 1.4213 -1.5885 9 6 6.2729 2.5663 -3.3868 10 7 5.5019 2.9940 -4.3627 11 14 8.0811 3.0341 -3.3517 12 1 8.8704 2.0148 -4.0886 13 1 8.2618 4.3603 -3.9950 14 1 8.5482 3.0991 -1.9436 15 6 4.0949 -0.7757 -1.3355 16 8 3.7513 -1.4737 -0.4051 17 6 4.6550 -1.4066 -2.5842 18 1 5.2921 -0.6944 -3.1086 19 6 5.4601 -2.6670 -2.2224 20 6 4.7721 -3.8493 -2.9358 21 6 4.0195 -3.1926 -4.1196 22 9 4.8923 -2.9405 -5.1833 23 9 2.9501 -3.9943 -4.5331 24 6 3.5060 -1.8669 -3.5048 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6887 1.8462 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0890 32 1 3.6802 2.3057 -2.3836 33 1 4.0680 0.8482 -3.3287 34 1 5.8722 3.5520 -5.0643 35 1 6.4876 -2.5670 -2.5718 36 1 5.4463 -2.8219 -1.1435 37 1 5.5146 -4.5582 -3.3020 38 1 4.0699 -4.3436 -2.2644 39 1 2.5993 -2.0410 -2.9254 40 1 3.3244 -1.1290 -4.2864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310410494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:37 Heat of formation + Delta-G solvation = -193.582491 kcal Electronic energy + Delta-G solvation = -24992.862398 eV Core-core repulsion = 21057.082541 eV Total energy + Delta-G solvation = -3935.779857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.59313 -46.76049 -39.52739 -37.52452 -36.07929 -34.91293 -32.66128 -30.29414 -28.78017 -27.73420 -27.01311 -25.95329 -23.05738 -22.94114 -21.01104 -20.68890 -18.21312 -17.39510 -16.76772 -16.51824 -16.31752 -16.15618 -15.60340 -15.45736 -15.00149 -14.64214 -14.43990 -14.15909 -13.84347 -13.54134 -13.27634 -13.07450 -12.67483 -12.38429 -12.32392 -12.00996 -11.90687 -11.65886 -11.54801 -11.34580 -11.17763 -11.03364 -10.90746 -10.78763 -10.69839 -10.42740 -10.35741 -10.07673 -9.77986 -9.35179 -8.89962 -8.58976 -7.69934 -6.21847 -4.30319 3.20897 3.28428 3.30143 3.37664 3.80896 3.99930 4.16104 4.17734 4.30470 4.51210 4.70457 5.10802 5.32675 5.35067 5.37762 5.45485 5.49002 5.55956 5.60808 5.64490 5.65550 5.73049 5.76068 5.81080 5.94011 6.05639 6.10040 6.25163 6.36522 6.38722 6.60480 6.75039 7.14630 7.44355 7.59079 7.73275 8.01465 8.36260 8.76901 9.08293 9.38884 10.84369 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.007675 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.057640 B = 3647.149302 C = 5588.372286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.594 5.594 6 C 0.237 3.763 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.529 3.471 16 O -0.552 6.552 17 C -0.115 4.115 18 H 0.124 0.876 19 C -0.107 4.107 20 C -0.152 4.152 21 C 0.276 3.724 22 F -0.191 7.191 23 F -0.201 7.201 24 C -0.139 4.139 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -6.821 3.811 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.117 3.883 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.316 3.684 16 O -0.431 6.431 17 C -0.136 4.136 18 H 0.142 0.858 19 C -0.145 4.145 20 C -0.190 4.190 21 C 0.240 3.760 22 F -0.172 7.172 23 F -0.182 7.182 24 C -0.178 4.178 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.262 -7.216 4.087 9.821 hybrid contribution 0.692 0.793 -0.447 1.144 sum -4.570 -6.422 3.640 8.682 Atomic orbital electron populations 1.22672 0.82627 1.02095 0.99180 1.88140 1.18090 1.27141 1.95153 1.23055 0.95490 0.85110 0.99694 1.21305 0.91038 0.99384 0.88344 1.48094 1.64585 1.06031 1.13697 1.19428 0.96161 0.90168 0.82541 1.21514 0.94505 1.32133 1.09830 0.91973 1.24951 0.98217 0.95433 0.95124 1.69915 1.35727 1.34904 1.12171 0.86531 0.84827 0.77989 0.78371 1.20367 1.21100 1.19792 1.20053 0.77721 0.82325 0.88299 1.90605 1.50433 1.61965 1.40133 1.21902 0.97337 0.98813 0.95524 0.85765 1.22039 0.98777 0.91397 1.02325 1.23263 1.00818 0.99305 0.95579 1.22052 0.78967 0.91441 0.83575 1.93006 1.69739 1.94767 1.59697 1.92968 1.57554 1.75635 1.92048 1.23146 0.99737 0.94859 1.00013 0.90208 0.94805 0.94664 0.93381 0.93258 0.90321 0.88928 0.94806 0.94431 0.92459 0.90541 0.89186 0.89503 0.88413 0.88372 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.42 9.28 -48.21 -0.45 -6.87 16 3 C 0.04 0.71 6.28 37.16 0.23 0.94 16 4 C 0.12 2.20 5.85 -4.04 -0.02 2.18 16 5 N -0.59 -12.09 2.44 -175.07 -0.43 -12.52 16 6 C 0.24 5.39 4.75 -5.20 -0.02 5.37 16 7 C -0.54 -13.48 8.65 -34.44 -0.30 -13.78 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 11 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.53 10.69 6.20 -10.99 -0.07 10.62 16 16 O -0.55 -12.01 14.43 -7.42 -0.11 -12.11 16 17 C -0.11 -2.08 2.41 -90.66 -0.22 -2.30 16 18 H 0.12 2.52 6.02 -51.93 -0.31 2.21 16 19 C -0.11 -1.68 6.31 -25.61 -0.16 -1.84 16 20 C -0.15 -2.09 6.43 -25.07 -0.16 -2.25 16 21 C 0.28 4.33 2.51 -24.74 -0.06 4.26 16 22 F -0.19 -3.26 17.21 2.25 0.04 -3.22 16 23 F -0.20 -3.19 17.21 2.25 0.04 -3.15 16 24 C -0.14 -2.32 5.77 -25.07 -0.14 -2.47 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.44 7.50 -51.93 -0.39 1.05 16 31 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 0.89 6.31 -51.93 -0.33 0.56 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.46 6.92 -51.93 -0.36 1.10 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.64 7.85 -51.93 -0.41 1.23 16 40 H 0.10 1.63 7.90 -51.92 -0.41 1.22 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -28.73 336.24 -6.01 -34.74 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.97 Total: 2.31 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 0.09 Total: 3.86 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.31 Total: -35.66 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.55 Total: -18.98 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.73 -6.01 -34.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310410494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.847 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds