Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00348 * 2 1 4 4 C 1.53004 * 109.47247 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47131 * 64.99803 * 4 3 2 6 6 C 1.46505 * 120.00090 * 90.00359 * 5 4 3 7 7 C 1.50690 * 109.47247 * 90.39446 * 6 5 4 8 8 H 1.08005 * 120.00309 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00131 * 180.27722 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.72776 * 9 7 6 11 11 Si 1.86806 * 120.00241 * 179.72879 * 9 7 6 12 12 H 1.48491 * 109.46910 * 89.99790 * 11 9 7 13 13 H 1.48499 * 109.46884 * 209.99873 * 11 9 7 14 14 H 1.48504 * 109.46601 * 329.99911 * 11 9 7 15 15 C 1.34778 * 120.00393 * 269.99969 * 5 4 3 16 16 O 1.21287 * 119.99680 * 5.03124 * 15 5 4 17 17 C 1.50692 * 120.00359 * 185.02808 * 15 5 4 18 18 H 1.09002 * 110.01734 * 24.65404 * 17 15 5 19 19 C 1.53874 * 110.03524 * 146.04409 * 17 15 5 20 20 C 1.54267 * 106.59992 * 119.28644 * 19 17 15 21 21 C 1.54889 * 104.19486 * 23.61306 * 20 19 17 22 22 F 1.39891 * 110.75814 * 80.37370 * 21 20 19 23 23 F 1.39906 * 110.75354 * 203.74531 * 21 20 19 24 24 C 1.54265 * 110.03569 * 263.21252 * 17 15 5 25 25 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46816 * 300.00468 * 1 2 3 27 27 H 1.09005 * 109.46535 * 60.00284 * 1 2 3 28 28 H 1.08995 * 109.46624 * 59.99847 * 3 2 1 29 29 H 1.09002 * 109.47214 * 300.00109 * 3 2 1 30 30 H 1.08997 * 109.46737 * 305.00134 * 4 3 2 31 31 H 1.08999 * 109.46973 * 185.00341 * 4 3 2 32 32 H 1.09002 * 109.46777 * 330.39568 * 6 5 4 33 33 H 1.08999 * 109.47267 * 210.40001 * 6 5 4 34 34 H 0.96993 * 120.00170 * 180.02562 * 10 9 7 35 35 H 1.08996 * 110.03859 * 238.57230 * 19 17 15 36 36 H 1.09006 * 110.03078 * 359.95455 * 19 17 15 37 37 H 1.08994 * 110.48914 * 142.29278 * 20 19 17 38 38 H 1.09004 * 110.48754 * 264.93667 * 20 19 17 39 39 H 1.08997 * 110.48574 * 335.78404 * 24 17 15 40 40 H 1.09008 * 110.48726 * 98.42332 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.2866 1.4005 -2.4148 7 6 5.7465 1.7727 -2.3897 8 1 6.3798 1.4213 -1.5885 9 6 6.2729 2.5663 -3.3868 10 7 5.5019 2.9940 -4.3627 11 14 8.0811 3.0341 -3.3517 12 1 8.8704 2.0148 -4.0886 13 1 8.2618 4.3603 -3.9950 14 1 8.5482 3.0991 -1.9436 15 6 4.0949 -0.7757 -1.3355 16 8 3.7513 -1.4737 -0.4051 17 6 4.6550 -1.4066 -2.5842 18 1 5.2921 -0.6944 -3.1086 19 6 5.4601 -2.6670 -2.2224 20 6 4.7721 -3.8493 -2.9358 21 6 4.0195 -3.1926 -4.1196 22 9 4.8923 -2.9405 -5.1833 23 9 2.9501 -3.9943 -4.5331 24 6 3.5060 -1.8669 -3.5048 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6887 1.8462 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0890 32 1 3.6802 2.3057 -2.3836 33 1 4.0680 0.8482 -3.3287 34 1 5.8722 3.5520 -5.0643 35 1 6.4876 -2.5670 -2.5718 36 1 5.4463 -2.8219 -1.1435 37 1 5.5146 -4.5582 -3.3020 38 1 4.0699 -4.3436 -2.2644 39 1 2.5993 -2.0410 -2.9254 40 1 3.3244 -1.1290 -4.2864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310410494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = -208.823483 kcal Electronic energy + Delta-G solvation = -24993.523297 eV Core-core repulsion = 21057.082541 eV Total energy + Delta-G solvation = -3936.440756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88377 -48.05541 -41.08460 -38.79495 -37.44810 -36.60495 -34.54942 -31.71459 -30.11557 -29.15542 -28.70997 -27.10863 -24.93246 -24.29865 -22.31299 -22.03766 -19.73661 -18.85627 -18.52716 -17.93887 -17.82713 -17.46689 -16.96210 -16.75684 -16.49676 -16.17050 -15.95504 -15.49886 -15.14107 -14.95978 -14.70665 -14.38450 -14.33351 -13.92898 -13.54859 -13.49065 -13.33213 -13.20367 -12.97946 -12.86578 -12.63838 -12.54996 -12.44761 -12.25843 -12.08229 -11.94823 -11.70683 -11.63712 -11.58154 -10.67672 -10.56834 -10.40994 -9.38728 -8.18323 -6.33289 1.43222 1.45824 1.54241 1.79577 2.28816 2.45464 2.70556 2.87802 2.97811 3.11981 3.21936 3.41746 3.87774 4.06703 4.16523 4.20140 4.24499 4.27318 4.38066 4.42601 4.46442 4.54116 4.55400 4.64063 4.66717 4.82198 4.84413 4.91684 4.98389 4.99396 5.12478 5.21354 5.24415 5.68594 5.88635 6.07435 6.35191 6.62629 6.85898 7.35486 7.49569 8.86604 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.007675 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.057640 B = 3647.149302 C = 5588.372286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.254 3.746 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.023 3.977 10 N -0.919 5.919 11 Si 0.953 3.047 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.526 3.474 16 O -0.567 6.567 17 C -0.114 4.114 18 H 0.100 0.900 19 C -0.104 4.104 20 C -0.140 4.140 21 C 0.277 3.723 22 F -0.199 7.199 23 F -0.200 7.200 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.267 0.733 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -7.475 4.388 9.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.027 4.027 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.133 3.867 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.178 4.178 10 N -0.558 5.558 11 Si 0.779 3.221 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.314 3.686 16 O -0.447 6.447 17 C -0.136 4.136 18 H 0.118 0.882 19 C -0.142 4.142 20 C -0.178 4.178 21 C 0.241 3.759 22 F -0.180 7.180 23 F -0.181 7.181 24 C -0.175 4.175 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.010 -7.871 4.680 10.437 hybrid contribution 0.541 1.008 -0.596 1.290 sum -4.469 -6.863 4.084 9.151 Atomic orbital electron populations 1.22851 0.80526 1.03112 1.00449 1.88081 1.20503 1.27902 1.95423 1.22982 0.93875 0.85018 1.00871 1.21485 0.92826 0.99368 0.86957 1.48106 1.64705 1.06117 1.13872 1.19047 0.94957 0.89612 0.83036 1.21690 0.95382 1.31769 1.09451 0.92561 1.25632 1.01800 0.95489 0.94845 1.70007 1.37313 1.35675 1.12822 0.85621 0.80451 0.77626 0.78413 1.20064 1.20893 1.19340 1.20357 0.77342 0.82153 0.88705 1.90587 1.51255 1.62087 1.40820 1.21856 0.97647 0.99444 0.94611 0.88188 1.22034 0.99134 0.90802 1.02256 1.23256 1.01291 0.98797 0.94457 1.22088 0.79026 0.90992 0.83836 1.92992 1.69949 1.94852 1.60237 1.92969 1.57639 1.75432 1.92094 1.23077 0.99279 0.95555 0.99554 0.89415 0.92664 0.94182 0.90275 0.93836 0.90799 0.88284 0.96144 0.95697 0.92404 0.89505 0.89670 0.86839 0.87309 0.88386 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.40 -13.62 9.28 -136.57 -1.27 -14.89 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.12 4.14 5.85 86.38 0.50 4.64 16 5 N -0.60 -24.56 2.44 -826.18 -2.02 -26.58 16 6 C 0.25 11.80 4.75 85.63 0.41 12.21 16 7 C -0.54 -27.30 8.65 25.60 0.22 -27.07 16 8 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.02 1.17 5.46 84.65 0.46 1.64 16 10 N -0.92 -49.72 13.29 21.45 0.28 -49.43 16 11 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 15 C 0.53 21.34 6.20 87.65 0.54 21.88 16 16 O -0.57 -24.49 14.43 9.35 0.13 -24.35 16 17 C -0.11 -4.15 2.41 -10.82 -0.03 -4.18 16 18 H 0.10 4.14 6.02 -2.39 -0.01 4.12 16 19 C -0.10 -3.12 6.31 31.32 0.20 -2.93 16 20 C -0.14 -3.55 6.43 31.67 0.20 -3.34 16 21 C 0.28 8.33 2.51 31.89 0.08 8.41 16 22 F -0.20 -6.57 17.21 44.97 0.77 -5.80 16 23 F -0.20 -6.06 17.21 44.97 0.77 -5.28 16 24 C -0.14 -4.53 5.77 31.67 0.18 -4.35 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.68 7.50 -2.39 -0.02 2.66 16 31 H 0.10 3.31 8.07 -2.39 -0.02 3.29 16 32 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 33 H 0.03 1.22 6.31 -2.39 -0.02 1.20 16 34 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.08 2.66 6.92 -2.38 -0.02 2.64 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.10 3.26 7.85 -2.39 -0.02 3.24 16 40 H 0.09 3.03 7.90 -2.38 -0.02 3.01 16 Total: -1.00 -60.16 336.24 6.22 -53.94 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.03 Total: 18.68 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.48 Total: 10.81 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.73 Total: -76.01 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.13 Total: -39.24 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 1.55 Total: -11.08 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -60.16 6.22 -53.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310410494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.884 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds