Wall clock time and date at job start Tue Mar 31 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00096 * 2 1 4 4 C 1.53003 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46714 * 60.41001 * 4 3 2 6 6 C 1.37098 * 120.00228 * 36.45046 * 5 4 3 7 7 H 1.08001 * 119.99914 * 292.00568 * 6 5 4 8 8 C 1.38946 * 120.00245 * 112.00600 * 6 5 4 9 9 N 1.31415 * 120.00305 * 51.80321 * 8 6 5 10 10 Si 1.86803 * 120.00021 * 231.79913 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47083 * 120.00198 * 10 8 6 13 13 H 1.48496 * 109.47235 * 239.99859 * 10 8 6 14 14 C 1.34778 * 119.99981 * 216.44236 * 5 4 3 15 15 O 1.21289 * 120.00268 * 166.73569 * 14 5 4 16 16 C 1.50698 * 119.99751 * 346.74189 * 14 5 4 17 17 H 1.08996 * 109.47516 * 13.05192 * 16 14 5 18 18 C 1.53001 * 109.46953 * 253.05308 * 16 14 5 19 19 C 1.53002 * 109.47031 * 180.02562 * 18 16 14 20 20 C 1.52991 * 109.47151 * 60.00688 * 19 18 16 21 21 C 1.53004 * 109.46921 * 299.99440 * 20 19 18 22 22 F 1.39897 * 109.47103 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47298 * 300.00282 * 21 20 19 24 24 C 1.53000 * 109.47274 * 133.05965 * 16 14 5 25 25 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47520 * 299.99587 * 1 2 3 27 27 H 1.09005 * 109.47211 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00247 * 3 2 1 29 29 H 1.09009 * 109.46505 * 60.00245 * 3 2 1 30 30 H 1.09002 * 109.46891 * 180.40998 * 4 3 2 31 31 H 1.08994 * 109.47104 * 300.41089 * 4 3 2 32 32 H 0.96996 * 120.00277 * 184.95630 * 9 8 6 33 33 H 1.08998 * 109.47573 * 300.00593 * 18 16 14 34 34 H 1.09008 * 109.47120 * 60.00330 * 18 16 14 35 35 H 1.09003 * 109.46670 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.47448 * 299.99889 * 19 18 16 37 37 H 1.08996 * 109.47597 * 59.99293 * 20 19 18 38 38 H 1.09002 * 109.47443 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46664 * 299.99646 * 24 16 14 40 40 H 1.08996 * 109.47480 * 59.99205 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9688 0.4659 -1.2001 6 6 3.3103 0.6554 -2.3876 7 1 2.2950 0.3057 -2.5038 8 6 3.9489 1.2972 -3.4415 9 7 5.1330 0.8887 -3.8391 10 14 3.1244 2.7408 -4.2934 11 1 1.8063 3.0016 -3.6611 12 1 3.9816 3.9467 -4.1652 13 1 2.9301 2.4222 -5.7307 14 6 5.0150 -0.3816 -1.1376 15 8 5.2270 -1.1518 -2.0502 16 6 5.9212 -0.3722 0.0664 17 1 5.4554 0.2018 0.8674 18 6 7.2596 0.2679 -0.3077 19 6 8.1800 0.2768 0.9145 20 6 8.4157 -1.1594 1.3859 21 6 7.0773 -1.7995 1.7601 22 9 7.2928 -3.1131 2.1906 23 9 6.4796 -1.0633 2.7886 24 6 6.1571 -1.8083 0.5385 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 3.9788 2.1803 0.0080 31 1 3.8562 0.6375 0.8871 32 1 5.6102 1.3802 -4.5258 33 1 7.7255 -0.3060 -1.1088 34 1 7.0917 1.2911 -0.6440 35 1 9.1333 0.7332 0.6480 36 1 7.7143 0.8505 1.7158 37 1 8.8814 -1.7331 0.5846 38 1 9.0710 -1.1531 2.2569 39 1 5.2036 -2.2643 0.8050 40 1 6.6229 -2.3822 -0.2625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316436268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:47 Heat of formation + Delta-G solvation = -178.208654 kcal Electronic energy + Delta-G solvation = -25250.430116 eV Core-core repulsion = 21315.316919 eV Total energy + Delta-G solvation = -3935.113198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.74611 -46.73408 -38.98063 -37.33893 -36.27910 -34.14161 -32.23698 -30.81369 -29.65087 -28.71478 -25.84738 -25.32929 -23.08445 -22.46495 -21.67864 -20.18855 -18.75754 -17.25049 -16.62796 -16.36529 -16.08756 -15.82183 -15.58094 -14.88678 -14.64575 -14.57840 -14.30967 -13.99895 -13.73346 -13.38696 -13.22121 -13.06060 -12.85916 -12.52161 -12.30685 -12.04896 -11.95708 -11.78845 -11.52376 -11.28012 -11.20888 -10.94324 -10.85797 -10.64872 -10.54634 -10.31199 -10.22337 -10.13672 -9.94817 -9.03799 -8.36278 -7.85599 -6.96262 -6.39997 -3.87357 3.20552 3.36864 3.40267 3.93803 4.13740 4.21624 4.38052 4.47117 4.56491 4.62180 4.75029 5.02990 5.19965 5.31360 5.42598 5.47507 5.56017 5.63279 5.65432 5.72983 5.80084 5.89682 5.95986 5.97573 6.01797 6.07123 6.14475 6.24860 6.30896 6.33259 6.43487 6.55163 6.63912 6.72141 7.63010 7.78449 8.51824 9.15831 9.24654 9.61979 10.38799 10.61400 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.006160 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.818981 B = 4544.116568 C = 5584.923011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.062 3.938 4 C 0.111 3.889 5 N -0.461 5.461 6 C -0.375 4.375 7 H 0.078 0.922 8 C 0.100 3.900 9 N -0.760 5.760 10 Si 0.837 3.163 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.285 1.285 14 C 0.493 3.507 15 O -0.522 6.522 16 C -0.113 4.113 17 H 0.085 0.915 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.155 4.155 21 C 0.288 3.712 22 F -0.207 7.207 23 F -0.202 7.202 24 C -0.138 4.138 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 1.344 10.927 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.294 6.294 3 C -0.015 4.015 4 C -0.013 4.013 5 N -0.186 5.186 6 C -0.499 4.499 7 H 0.096 0.904 8 C -0.117 4.117 9 N -0.386 5.386 10 Si 0.660 3.340 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.211 1.211 14 C 0.280 3.720 15 O -0.398 6.398 16 C -0.135 4.135 17 H 0.103 0.897 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.193 4.193 21 C 0.252 3.748 22 F -0.188 7.188 23 F -0.183 7.183 24 C -0.177 4.177 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.792 0.683 10.308 10.701 hybrid contribution -0.614 1.158 -0.286 1.342 sum 2.178 1.842 10.021 10.419 Atomic orbital electron populations 1.22613 0.82680 1.01818 0.99109 1.87980 1.18146 1.28099 1.95160 1.22729 0.94548 0.84740 0.99490 1.21569 0.92368 0.96838 0.90480 1.43060 1.29558 1.38428 1.07553 1.18399 0.98223 1.43093 0.90167 0.90450 1.25586 0.94671 0.96238 0.95184 1.70886 1.15776 1.29856 1.22106 0.87415 0.81714 0.85500 0.79379 1.19026 1.20702 1.21134 1.20191 0.83606 0.81543 0.86652 1.90557 1.72304 1.37909 1.39042 1.21447 0.97542 0.94936 0.99586 0.89717 1.21421 0.93665 1.01935 0.97189 1.21540 1.00639 0.94430 0.98788 1.22500 0.94640 0.98744 1.03416 1.21191 0.94810 0.74184 0.84611 1.92976 1.95794 1.38624 1.91389 1.92963 1.85604 1.77266 1.62493 1.22326 1.00217 0.99499 0.95615 0.90502 0.95170 0.94396 0.91646 0.94570 0.92677 0.92009 0.92965 0.90676 0.91002 0.90708 0.91163 0.88771 0.90059 0.89730 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.38 -7.37 10.28 -35.23 -0.36 -7.73 16 3 C 0.06 1.12 5.49 37.16 0.20 1.33 16 4 C 0.11 2.16 5.84 -4.04 -0.02 2.14 16 5 N -0.46 -11.24 2.74 -114.81 -0.31 -11.55 16 6 C -0.38 -10.16 6.84 -14.93 -0.10 -10.26 16 7 H 0.08 2.20 7.70 -52.49 -0.40 1.80 16 8 C 0.10 2.68 5.37 -17.47 -0.09 2.59 16 9 N -0.76 -21.42 12.14 55.50 0.67 -20.74 16 10 Si 0.84 19.34 29.69 -169.99 -5.05 14.29 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.49 12.07 5.90 -10.99 -0.06 12.00 16 15 O -0.52 -15.08 15.32 5.55 0.09 -15.00 16 16 C -0.11 -2.12 2.09 -91.77 -0.19 -2.31 16 17 H 0.08 1.48 5.18 -51.93 -0.27 1.21 16 18 C -0.10 -1.74 5.19 -26.73 -0.14 -1.88 16 19 C -0.12 -1.48 5.80 -26.73 -0.16 -1.63 16 20 C -0.15 -1.93 5.45 -26.73 -0.15 -2.08 16 21 C 0.29 4.33 2.10 -26.75 -0.06 4.28 16 22 F -0.21 -3.24 17.06 2.25 0.04 -3.20 16 23 F -0.20 -3.17 16.03 2.25 0.04 -3.13 16 24 C -0.14 -2.39 4.52 -26.76 -0.12 -2.52 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 29 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.10 6.01 -51.93 -0.31 0.79 16 32 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.87 7.80 -51.93 -0.41 0.46 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.10 1.84 7.92 -51.93 -0.41 1.43 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -32.25 329.98 -5.66 -37.91 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.97 Total: 0.89 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.22 Total: 3.30 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.36 Total: -32.30 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.28 Total: -22.73 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.07 Total: -6.33 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.05 Total: 14.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.25 -5.66 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316436268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.295 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds