Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00096 * 2 1 4 4 C 1.53003 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46714 * 60.41001 * 4 3 2 6 6 C 1.37098 * 120.00228 * 36.45046 * 5 4 3 7 7 H 1.08001 * 119.99914 * 292.00568 * 6 5 4 8 8 C 1.38946 * 120.00245 * 112.00600 * 6 5 4 9 9 N 1.31415 * 120.00305 * 51.80321 * 8 6 5 10 10 Si 1.86803 * 120.00021 * 231.79913 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47083 * 120.00198 * 10 8 6 13 13 H 1.48496 * 109.47235 * 239.99859 * 10 8 6 14 14 C 1.34778 * 119.99981 * 216.44236 * 5 4 3 15 15 O 1.21289 * 120.00268 * 166.73569 * 14 5 4 16 16 C 1.50698 * 119.99751 * 346.74189 * 14 5 4 17 17 H 1.08996 * 109.47516 * 13.05192 * 16 14 5 18 18 C 1.53001 * 109.46953 * 253.05308 * 16 14 5 19 19 C 1.53002 * 109.47031 * 180.02562 * 18 16 14 20 20 C 1.52991 * 109.47151 * 60.00688 * 19 18 16 21 21 C 1.53004 * 109.46921 * 299.99440 * 20 19 18 22 22 F 1.39897 * 109.47103 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47298 * 300.00282 * 21 20 19 24 24 C 1.53000 * 109.47274 * 133.05965 * 16 14 5 25 25 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47520 * 299.99587 * 1 2 3 27 27 H 1.09005 * 109.47211 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00247 * 3 2 1 29 29 H 1.09009 * 109.46505 * 60.00245 * 3 2 1 30 30 H 1.09002 * 109.46891 * 180.40998 * 4 3 2 31 31 H 1.08994 * 109.47104 * 300.41089 * 4 3 2 32 32 H 0.96996 * 120.00277 * 184.95630 * 9 8 6 33 33 H 1.08998 * 109.47573 * 300.00593 * 18 16 14 34 34 H 1.09008 * 109.47120 * 60.00330 * 18 16 14 35 35 H 1.09003 * 109.46670 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.47448 * 299.99889 * 19 18 16 37 37 H 1.08996 * 109.47597 * 59.99293 * 20 19 18 38 38 H 1.09002 * 109.47443 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46664 * 299.99646 * 24 16 14 40 40 H 1.08996 * 109.47480 * 59.99205 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9688 0.4659 -1.2001 6 6 3.3103 0.6554 -2.3876 7 1 2.2950 0.3057 -2.5038 8 6 3.9489 1.2972 -3.4415 9 7 5.1330 0.8887 -3.8391 10 14 3.1244 2.7408 -4.2934 11 1 1.8063 3.0016 -3.6611 12 1 3.9816 3.9467 -4.1652 13 1 2.9301 2.4222 -5.7307 14 6 5.0150 -0.3816 -1.1376 15 8 5.2270 -1.1518 -2.0502 16 6 5.9212 -0.3722 0.0664 17 1 5.4554 0.2018 0.8674 18 6 7.2596 0.2679 -0.3077 19 6 8.1800 0.2768 0.9145 20 6 8.4157 -1.1594 1.3859 21 6 7.0773 -1.7995 1.7601 22 9 7.2928 -3.1131 2.1906 23 9 6.4796 -1.0633 2.7886 24 6 6.1571 -1.8083 0.5385 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 3.9788 2.1803 0.0080 31 1 3.8562 0.6375 0.8871 32 1 5.6102 1.3802 -4.5258 33 1 7.7255 -0.3060 -1.1088 34 1 7.0917 1.2911 -0.6440 35 1 9.1333 0.7332 0.6480 36 1 7.7143 0.8505 1.7158 37 1 8.8814 -1.7331 0.5846 38 1 9.0710 -1.1531 2.2569 39 1 5.2036 -2.2643 0.8050 40 1 6.6229 -2.3822 -0.2625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316436268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = -198.716943 kcal Electronic energy + Delta-G solvation = -25251.319422 eV Core-core repulsion = 21315.316919 eV Total energy + Delta-G solvation = -3936.002504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97130 -47.96031 -40.67418 -38.75008 -37.75734 -36.00889 -34.17776 -32.16654 -30.94371 -30.29675 -27.41646 -26.90943 -24.56302 -23.71930 -23.25274 -21.57516 -20.38219 -18.78113 -18.13377 -17.85194 -17.35740 -17.32053 -17.03297 -16.61453 -16.21450 -16.06719 -15.71741 -15.50520 -15.24927 -14.97146 -14.55766 -14.31523 -14.27537 -13.95343 -13.69759 -13.57788 -13.40959 -13.22568 -13.11689 -12.88780 -12.68082 -12.44302 -12.40631 -12.10318 -12.02968 -11.83392 -11.73201 -11.57504 -11.27608 -10.48915 -10.35443 -9.80210 -8.90658 -8.40424 -5.94038 1.35054 1.45463 1.57764 2.29842 2.44026 2.69933 2.79358 3.02493 3.09986 3.29278 3.39411 3.50999 3.91315 4.01594 4.17582 4.21081 4.22163 4.31981 4.41016 4.47135 4.51617 4.61933 4.66001 4.71174 4.80921 4.84386 4.89568 4.92765 4.94225 5.00427 5.10604 5.17072 5.20146 5.40323 5.58811 6.42204 6.46184 7.16637 7.28824 7.72217 8.46364 8.61994 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.006160 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.818981 B = 4544.116568 C = 5584.923011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.064 3.936 4 C 0.106 3.894 5 N -0.472 5.472 6 C -0.393 4.393 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.803 5.803 10 Si 0.919 3.081 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.291 1.291 14 C 0.477 3.523 15 O -0.583 6.583 16 C -0.101 4.101 17 H 0.101 0.899 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.151 4.151 21 C 0.294 3.706 22 F -0.210 7.210 23 F -0.203 7.203 24 C -0.137 4.137 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 3.180 13.010 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.332 6.332 3 C -0.013 4.013 4 C -0.017 4.017 5 N -0.196 5.196 6 C -0.517 4.517 7 H 0.071 0.929 8 C -0.158 4.158 9 N -0.431 5.431 10 Si 0.741 3.259 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.217 1.217 14 C 0.266 3.734 15 O -0.464 6.464 16 C -0.123 4.123 17 H 0.119 0.881 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.188 4.188 21 C 0.258 3.742 22 F -0.191 7.191 23 F -0.184 7.184 24 C -0.176 4.176 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.111 2.561 12.421 13.058 hybrid contribution -0.828 0.499 -0.937 1.346 sum 2.283 3.060 11.484 12.102 Atomic orbital electron populations 1.22800 0.80507 1.02907 1.00380 1.87921 1.20705 1.29165 1.95440 1.22731 0.93423 0.84491 1.00615 1.21813 0.93786 0.97396 0.88659 1.43417 1.29274 1.38571 1.08379 1.18378 0.97193 1.44272 0.91887 0.92858 1.26332 0.95396 0.98150 0.95918 1.70950 1.17852 1.30893 1.23415 0.86179 0.80798 0.81462 0.77491 1.18007 1.19565 1.21749 1.21119 0.84214 0.80456 0.87628 1.90505 1.73925 1.40274 1.41677 1.21318 0.97490 0.96237 0.97217 0.88127 1.21381 0.93248 1.00404 0.98768 1.21498 1.00897 0.95053 0.96782 1.22548 0.93208 0.98173 1.04905 1.21151 0.95497 0.74336 0.83255 1.92973 1.95761 1.39044 1.91285 1.92961 1.85862 1.77195 1.62352 1.22244 1.00297 0.98333 0.96694 0.89669 0.92143 0.94721 0.93447 0.90289 0.90673 0.90406 0.92677 0.92869 0.92151 0.87876 0.89946 0.88186 0.87000 0.91139 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.41 -16.04 10.28 -148.98 -1.53 -17.57 16 3 C 0.06 2.23 5.49 71.98 0.39 2.63 16 4 C 0.11 4.02 5.84 86.38 0.50 4.53 16 5 N -0.47 -23.54 2.74 -635.55 -1.74 -25.28 16 6 C -0.39 -21.92 6.84 84.04 0.57 -21.34 16 7 H 0.05 3.18 7.70 -2.91 -0.02 3.16 16 8 C 0.06 3.07 5.37 84.92 0.46 3.52 16 9 N -0.80 -46.79 12.14 21.66 0.26 -46.52 16 10 Si 0.92 40.77 29.69 68.60 2.04 42.80 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.48 24.16 5.90 87.66 0.52 24.68 16 15 O -0.58 -35.63 15.32 -3.06 -0.05 -35.68 16 16 C -0.10 -3.79 2.09 -11.54 -0.02 -3.81 16 17 H 0.10 3.39 5.18 -2.39 -0.01 3.38 16 18 C -0.10 -3.29 5.19 30.60 0.16 -3.13 16 19 C -0.11 -2.34 5.80 30.59 0.18 -2.16 16 20 C -0.15 -3.29 5.45 30.59 0.17 -3.12 16 21 C 0.29 8.31 2.10 30.58 0.06 8.37 16 22 F -0.21 -6.24 17.06 44.97 0.77 -5.47 16 23 F -0.20 -5.82 16.03 44.97 0.72 -5.10 16 24 C -0.14 -4.80 4.52 30.58 0.14 -4.66 16 25 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.05 1.81 7.31 -2.39 -0.02 1.79 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 2.65 6.01 -2.39 -0.01 2.64 16 32 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 3.32 7.92 -2.39 -0.02 3.30 16 Total: -1.00 -73.55 329.98 5.88 -67.67 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.03 Total: 17.51 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.38 Total: 7.63 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.48 Total: -71.80 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.58 Total: -53.25 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 1.49 Total: -10.57 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.04 Total: 42.80 kcal Total: -73.55 5.88 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316436268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.042 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds