Wall clock time and date at job start Tue Mar 31 2020 06:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99960 * 2 1 4 4 C 1.53002 * 109.46704 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47629 * 62.70047 * 4 3 2 6 6 C 1.37095 * 120.00190 * 265.12596 * 5 4 3 7 7 H 1.08000 * 120.00233 * 140.27075 * 6 5 4 8 8 C 1.38955 * 119.99785 * 320.26895 * 6 5 4 9 9 N 1.31410 * 119.99598 * 160.70267 * 8 6 5 10 10 Si 1.86801 * 120.00105 * 340.70186 * 8 6 5 11 11 H 1.48495 * 109.47036 * 95.10140 * 10 8 6 12 12 H 1.48501 * 109.46934 * 215.10295 * 10 8 6 13 13 H 1.48497 * 109.46829 * 335.10393 * 10 8 6 14 14 C 1.34778 * 119.99903 * 85.12123 * 5 4 3 15 15 O 1.21290 * 120.00292 * 5.30499 * 14 5 4 16 16 C 1.50703 * 119.99945 * 185.29913 * 14 5 4 17 17 H 1.08998 * 109.47085 * 333.43361 * 16 14 5 18 18 C 1.53005 * 109.46745 * 93.43254 * 16 14 5 19 19 C 1.53000 * 109.46783 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.47259 * 299.99938 * 19 18 16 21 21 C 1.52996 * 109.47130 * 60.00128 * 20 19 18 22 22 C 1.52999 * 109.47314 * 300.00111 * 21 20 19 23 23 F 1.39901 * 109.47000 * 300.00280 * 22 21 20 24 24 F 1.39899 * 109.47436 * 179.97438 * 22 21 20 25 25 H 1.09006 * 109.47028 * 299.99985 * 1 2 3 26 26 H 1.09000 * 109.47279 * 59.99680 * 1 2 3 27 27 H 1.09002 * 109.47480 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47171 * 299.99498 * 3 2 1 29 29 H 1.08993 * 109.47301 * 60.00411 * 3 2 1 30 30 H 1.09000 * 109.46913 * 182.70785 * 4 3 2 31 31 H 1.09004 * 109.47009 * 302.69806 * 4 3 2 32 32 H 0.97004 * 119.99367 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47094 * 299.99942 * 18 16 14 34 34 H 1.08998 * 109.47241 * 60.00204 * 18 16 14 35 35 H 1.08998 * 109.47415 * 60.00139 * 19 18 16 36 36 H 1.09002 * 109.46766 * 179.97438 * 19 18 16 37 37 H 1.09005 * 109.46972 * 179.97438 * 20 19 18 38 38 H 1.08990 * 109.47128 * 299.99768 * 20 19 18 39 39 H 1.09004 * 109.47509 * 59.99851 * 21 20 19 40 40 H 1.08997 * 109.47051 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9718 0.5147 -1.2282 6 6 4.1892 -0.8389 -1.2304 7 1 3.8857 -1.4332 -2.0796 8 6 4.8000 -1.4462 -0.1400 9 7 4.6761 -2.7413 0.0453 10 14 5.7972 -0.4217 1.0623 11 1 4.9403 -0.0336 2.2112 12 1 6.9514 -1.2175 1.5520 13 1 6.2926 0.8002 0.3791 14 6 4.1595 1.2292 -2.3555 15 8 4.0610 2.4378 -2.3310 16 6 4.4918 0.5263 -3.6465 17 1 4.9892 -0.4186 -3.4281 18 6 3.2034 0.2563 -4.4264 19 6 3.5409 -0.4567 -5.7374 20 6 4.4681 0.4268 -6.5745 21 6 5.7564 0.6968 -5.7946 22 6 5.4190 1.4098 -4.4836 23 9 4.7802 2.6226 -4.7634 24 9 6.5969 1.6563 -3.7702 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8900 29 1 1.6887 1.8463 0.8899 30 1 3.9788 2.1791 0.0479 31 1 3.8541 0.6022 0.8640 32 1 5.1022 -3.1651 0.8067 33 1 2.5427 -0.3728 -3.8299 34 1 2.7061 1.2012 -4.6448 35 1 4.0386 -1.4017 -5.5195 36 1 2.6230 -0.6495 -6.2928 37 1 4.7089 -0.0815 -7.5082 38 1 3.9705 1.3716 -6.7925 39 1 6.2541 -0.2481 -5.5765 40 1 6.4171 1.3259 -6.3911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317026953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:53 Heat of formation + Delta-G solvation = -200.744048 kcal Electronic energy + Delta-G solvation = -25811.266427 eV Core-core repulsion = 21875.176022 eV Total energy + Delta-G solvation = -3936.090406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86416 -47.85301 -41.00202 -38.82423 -38.04494 -36.71903 -33.97813 -32.66385 -31.10455 -30.53344 -27.27970 -26.78526 -25.01818 -23.95447 -23.37288 -21.11288 -20.79662 -19.23389 -18.33149 -18.19555 -17.61053 -17.32425 -17.26156 -16.79886 -16.21889 -16.20146 -15.84204 -15.39123 -15.13655 -14.86701 -14.73709 -14.45711 -14.25682 -14.16383 -13.98083 -13.70289 -13.47328 -13.25423 -13.17768 -12.99478 -12.65512 -12.54497 -12.45999 -12.25536 -11.97119 -11.78973 -11.73455 -11.56558 -11.25240 -11.04228 -10.60521 -10.35106 -9.72822 -8.46435 -6.07738 1.15489 1.28526 1.39715 1.75227 2.18607 2.41916 2.86607 2.88819 3.05477 3.15991 3.46701 3.59287 3.95130 4.05146 4.08434 4.10066 4.21755 4.26678 4.33670 4.35093 4.37748 4.49694 4.53187 4.58047 4.71514 4.74311 4.77806 4.83346 4.96646 5.06386 5.09035 5.19883 5.23280 5.42862 5.46561 6.06923 6.22918 6.35512 6.96971 7.37530 7.72440 8.67120 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.007248 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.511871 B = 3862.466123 C = 4367.903550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.063 3.937 4 C 0.090 3.910 5 N -0.461 5.461 6 C -0.322 4.322 7 H 0.089 0.911 8 C 0.039 3.961 9 N -0.890 5.890 10 Si 0.913 3.087 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.476 3.524 15 O -0.611 6.611 16 C -0.135 4.135 17 H 0.120 0.880 18 C -0.096 4.096 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.149 4.149 22 C 0.294 3.706 23 F -0.202 7.202 24 F -0.221 7.221 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.277 0.723 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 3.044 -8.826 9.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.033 4.033 5 N -0.180 5.180 6 C -0.450 4.450 7 H 0.106 0.894 8 C -0.165 4.165 9 N -0.527 5.527 10 Si 0.739 3.261 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.266 3.734 15 O -0.497 6.497 16 C -0.157 4.157 17 H 0.138 0.862 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.187 4.187 22 C 0.257 3.743 23 F -0.183 7.183 24 F -0.203 7.203 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.424 3.317 -8.648 9.875 hybrid contribution 0.417 0.681 1.361 1.578 sum -3.007 3.998 -7.287 8.839 Atomic orbital electron populations 1.22882 0.80361 1.03297 1.00428 1.88139 1.20691 1.27250 1.95350 1.22749 0.92941 0.85233 1.00570 1.21857 0.94486 0.98064 0.88893 1.43697 1.58450 1.07824 1.08069 1.18798 1.39040 0.80580 1.06574 0.89384 1.25678 0.96527 0.95898 0.98425 1.69789 1.41682 1.11049 1.30148 0.86354 0.79609 0.79636 0.80455 1.18660 1.20837 1.20016 1.20667 0.79335 0.86633 0.86735 1.90564 1.57224 1.14987 1.86903 1.22225 1.00012 1.00555 0.92917 0.86216 1.21354 0.93593 1.01328 0.97105 1.21618 1.01240 0.98734 0.93668 1.21555 0.93267 1.00996 0.99114 1.22598 1.01652 1.02504 0.91966 1.21349 0.78379 0.81341 0.93192 1.92955 1.82389 1.48784 1.94205 1.92945 1.50625 1.95255 1.81428 0.92716 0.93944 0.89171 0.93984 0.90508 0.89953 0.91281 0.91290 0.91462 0.92076 0.90514 0.88753 0.87089 0.91403 0.87404 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.44 10.31 -148.98 -1.54 -17.98 16 3 C 0.06 2.45 6.26 71.98 0.45 2.90 16 4 C 0.09 4.08 4.41 86.38 0.38 4.46 16 5 N -0.46 -22.70 2.09 -635.54 -1.33 -24.03 16 6 C -0.32 -16.86 8.32 84.04 0.70 -16.16 16 7 H 0.09 4.78 7.17 -2.91 -0.02 4.76 16 8 C 0.04 2.10 5.31 84.93 0.45 2.55 16 9 N -0.89 -49.32 13.96 21.66 0.30 -49.01 16 10 Si 0.91 43.10 24.95 68.60 1.71 44.81 16 11 H -0.26 -11.62 6.71 99.48 0.67 -10.95 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 14 C 0.48 22.96 6.35 87.66 0.56 23.51 16 15 O -0.61 -31.96 14.97 -3.06 -0.05 -32.01 16 16 C -0.14 -5.37 1.55 -11.54 -0.02 -5.39 16 17 H 0.12 4.90 6.48 -2.39 -0.02 4.89 16 18 C -0.10 -3.13 5.06 30.60 0.15 -2.98 16 19 C -0.12 -2.63 5.92 30.59 0.18 -2.45 16 20 C -0.11 -2.25 5.80 30.59 0.18 -2.07 16 21 C -0.15 -3.70 5.45 30.59 0.17 -3.53 16 22 C 0.29 10.82 1.50 30.59 0.05 10.86 16 23 F -0.20 -8.17 14.61 44.97 0.66 -7.51 16 24 F -0.22 -9.40 16.77 44.97 0.75 -8.64 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 3.66 7.50 -2.39 -0.02 3.65 16 31 H 0.07 3.22 3.59 -2.38 -0.01 3.21 16 32 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 39 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.23 323.76 6.01 -62.22 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.00 Total: 18.40 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 4.50 Total: 13.75 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.03 Total: -73.04 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.58 Total: -49.98 kcal Atomic # 9 Polarization: -17.57 SS G_CDS: 1.41 Total: -16.15 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.71 Total: 44.81 kcal Total: -68.23 6.01 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317026953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.520 kcal (2) G-P(sol) polarization free energy of solvation -68.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds