Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46747 * 111.00145 * 2 1 4 4 C 1.53421 * 108.59641 * 285.47454 * 3 2 1 5 5 O 1.43139 * 107.89417 * 296.72406 * 4 3 2 6 6 C 1.36244 * 116.67587 * 45.35966 * 5 4 3 7 7 C 1.38783 * 118.67459 * 165.38828 * 6 5 4 8 8 C 1.38116 * 120.29915 * 179.97438 * 7 6 5 9 9 C 1.38835 * 119.95719 * 359.49932 * 8 7 6 10 10 N 1.40143 * 120.01752 * 180.31966 * 9 8 7 11 11 C 1.34772 * 119.99792 * 144.90319 * 10 9 8 12 12 O 1.21593 * 120.00496 * 4.60649 * 11 10 9 13 13 N 1.34782 * 119.99878 * 184.61596 * 11 10 9 14 14 C 1.46498 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47272 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99654 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46749 * 90.00806 * 19 17 15 21 21 H 1.48507 * 109.46988 * 210.00153 * 19 17 15 22 22 H 1.48494 * 109.47525 * 330.00099 * 19 17 15 23 23 C 1.38621 * 119.96572 * 0.34020 * 9 8 7 24 24 C 1.38988 * 121.34425 * 345.00472 * 6 5 4 25 25 H 1.09000 * 109.47388 * 185.43730 * 1 2 3 26 26 H 1.09000 * 109.47133 * 305.43717 * 1 2 3 27 27 H 1.08996 * 109.47163 * 65.43282 * 1 2 3 28 28 H 1.08996 * 109.62022 * 45.21014 * 3 2 1 29 29 H 1.09001 * 109.61428 * 165.74509 * 3 2 1 30 30 H 1.08997 * 109.77631 * 56.32443 * 4 3 2 31 31 H 1.09008 * 109.77541 * 177.12792 * 4 3 2 32 32 H 1.07999 * 119.85073 * 359.71155 * 7 6 5 33 33 H 1.08004 * 120.01760 * 179.77681 * 8 7 6 34 34 H 0.96999 * 119.99606 * 324.89515 * 10 9 8 35 35 H 0.97008 * 119.99580 * 359.97438 * 13 11 10 36 36 H 1.08999 * 109.47013 * 299.99518 * 14 13 11 37 37 H 1.08997 * 109.46998 * 59.99229 * 14 13 11 38 38 H 0.96994 * 120.00262 * 179.97438 * 18 17 15 39 39 H 1.07994 * 119.90060 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9658 -1.4014 5 8 2.5924 1.1930 -2.3160 6 6 2.5136 -0.1618 -2.1961 7 6 2.9971 -0.9511 -3.2302 8 6 2.9346 -2.3281 -3.1435 9 6 2.3955 -2.9279 -2.0134 10 7 2.3376 -4.3251 -1.9213 11 6 2.5112 -4.9296 -0.7294 12 8 2.6346 -4.2615 0.2790 13 7 2.5484 -6.2749 -0.6551 14 6 2.7378 -6.9320 0.6405 15 6 2.7413 -8.4269 0.4498 16 1 2.6155 -8.8455 -0.5378 17 6 2.9061 -9.2600 1.5359 18 7 3.0598 -8.7502 2.7384 19 14 2.9098 -11.1130 1.2995 20 1 4.2977 -11.5770 1.0472 21 1 2.3832 -11.7692 2.5233 22 1 2.0513 -11.4659 0.1403 23 6 1.9142 -2.1440 -0.9764 24 6 1.9701 -0.7570 -1.0638 25 1 -0.3634 -1.0230 0.0974 26 1 -0.3633 0.5958 0.8373 27 1 -0.3633 0.4272 -0.9346 28 1 1.4508 1.9709 0.7286 29 1 3.0551 1.3549 0.2528 30 1 0.7568 1.9179 -1.6853 31 1 2.1462 3.0020 -1.4097 32 1 3.4204 -0.4864 -4.1084 33 1 3.3090 -2.9380 -3.9525 34 1 2.1724 -4.8570 -2.7155 35 1 2.4498 -6.8079 -1.4595 36 1 3.6884 -6.6182 1.0716 37 1 1.9251 -6.6535 1.3113 38 1 3.1754 -9.3363 3.5025 39 1 1.4947 -2.6117 -0.0980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332698412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -22.682989 kcal Electronic energy + Delta-G solvation = -22745.970580 eV Core-core repulsion = 19268.290668 eV Total energy + Delta-G solvation = -3477.679912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20423 -39.72028 -37.40079 -36.56749 -34.32973 -33.91906 -32.32440 -30.70132 -29.68163 -28.50141 -26.98772 -25.48226 -24.10451 -23.07756 -22.18605 -20.42618 -20.06405 -18.27563 -18.01974 -17.44073 -16.74149 -15.95202 -15.74488 -15.15044 -14.87894 -14.77384 -14.70718 -14.49514 -14.06326 -13.72643 -13.58234 -13.33689 -12.97317 -12.46508 -12.26823 -12.22849 -12.00830 -11.97993 -11.62147 -11.37026 -11.11059 -10.96944 -10.89283 -10.31295 -9.70079 -9.51690 -9.39606 -9.21308 -8.75210 -8.14849 -7.95207 -7.48337 -6.16706 -4.23700 1.31148 1.48971 3.13021 3.18616 3.24366 3.30928 3.33443 3.50901 3.64284 4.02359 4.31635 4.35385 4.67738 4.73006 4.84650 4.98556 5.04960 5.16061 5.19512 5.21119 5.26910 5.33716 5.49580 5.62339 5.68373 5.91644 5.95316 6.27402 6.36368 6.50421 6.72021 6.96787 7.06272 7.07836 7.42836 7.45957 7.51046 7.53509 7.83993 7.99602 8.70217 8.85108 9.22395 9.43726 10.93462 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.003042 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.257136 B = 9201.058963 C = 9779.249685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.488 5.488 3 C 0.016 3.984 4 C 0.022 3.978 5 O -0.313 6.313 6 C 0.059 3.941 7 C -0.114 4.114 8 C -0.131 4.131 9 C 0.162 3.838 10 N -0.694 5.694 11 C 0.689 3.311 12 O -0.580 6.580 13 N -0.723 5.723 14 C 0.266 3.734 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.086 4.086 24 C 0.044 3.956 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.403 0.597 35 H 0.388 0.612 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 18.860 -11.863 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.205 5.205 3 C -0.112 4.112 4 C -0.055 4.055 5 O -0.227 6.227 6 C 0.012 3.988 7 C -0.134 4.134 8 C -0.152 4.152 9 C 0.066 3.934 10 N -0.343 5.343 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.374 5.374 14 C 0.145 3.855 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.108 4.108 24 C -0.052 4.052 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.220 0.780 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.197 19.199 -10.295 22.185 hybrid contribution -0.370 -1.164 -1.207 1.717 sum -4.567 18.035 -11.502 21.872 Atomic orbital electron populations 1.22572 0.85114 1.03731 1.00611 1.59069 1.08525 1.12272 1.40632 1.22971 1.03036 0.88530 0.96623 1.23504 0.95648 0.95901 0.90476 1.86284 1.65250 1.14687 1.56463 1.18934 1.03524 0.82747 0.93643 1.20091 1.03469 0.92078 0.97721 1.20658 1.01767 0.93897 0.98908 1.17259 0.98369 0.82406 0.95414 1.42762 1.76376 1.04525 1.10647 1.16187 0.78673 0.83306 0.82909 1.90898 1.57271 1.63701 1.33886 1.45767 1.75244 1.02984 1.13425 1.19041 0.97409 0.90963 0.78060 1.21206 1.52220 0.90408 0.94347 0.91898 1.24942 0.94728 0.99444 0.94880 1.69973 1.47816 1.35619 0.98765 0.86404 0.78336 0.84339 0.77747 1.20462 1.21000 1.19769 1.21047 0.99472 0.90428 0.99830 1.18524 1.04604 0.93142 0.88962 0.90239 0.90579 0.95068 0.88443 0.88782 0.91860 0.87149 0.85063 0.85085 0.76220 0.77952 0.95515 0.95518 0.92410 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.19 60.06 0.55 0.82 16 2 N -0.49 -6.38 4.86 -178.69 -0.87 -7.25 16 3 C 0.02 0.16 6.02 -3.69 -0.02 0.14 16 4 C 0.02 0.20 7.06 37.38 0.26 0.46 16 5 O -0.31 -3.91 10.40 -20.52 -0.21 -4.12 16 6 C 0.06 0.82 6.47 -39.10 -0.25 0.56 16 7 C -0.11 -1.42 9.93 -39.42 -0.39 -1.81 16 8 C -0.13 -1.64 9.96 -39.41 -0.39 -2.03 16 9 C 0.16 2.49 6.30 -83.69 -0.53 1.96 16 10 N -0.69 -10.68 5.35 -14.24 -0.08 -10.76 16 11 C 0.69 14.11 8.41 -86.92 -0.73 13.38 16 12 O -0.58 -14.27 13.78 5.28 0.07 -14.20 16 13 N -0.72 -15.14 5.55 -66.42 -0.37 -15.51 16 14 C 0.27 7.04 5.43 -5.20 -0.03 7.01 16 15 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.09 -1.44 8.12 -39.12 -0.32 -1.75 16 24 C 0.04 0.66 5.12 -83.60 -0.43 0.23 16 25 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 26 H 0.08 0.63 7.98 -51.93 -0.41 0.21 16 27 H 0.03 0.29 6.89 -51.93 -0.36 -0.06 16 28 H 0.10 0.69 7.90 -51.93 -0.41 0.28 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.53 6.80 -51.93 -0.35 0.17 16 31 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.40 4.65 8.84 -40.82 -0.36 4.29 16 35 H 0.39 6.83 8.34 -40.82 -0.34 6.49 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.15 2.97 6.21 -52.49 -0.33 2.64 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -33.87 326.25 -8.55 -42.42 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.04 Total: 8.35 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.69 Total: 5.68 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.58 Total: -58.78 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.14 Total: -18.32 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.87 -8.55 -42.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332698412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds