Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46747 * 111.00145 * 2 1 4 4 C 1.53421 * 108.59641 * 285.47454 * 3 2 1 5 5 O 1.43139 * 107.89417 * 296.72406 * 4 3 2 6 6 C 1.36244 * 116.67587 * 45.35966 * 5 4 3 7 7 C 1.38783 * 118.67459 * 165.38828 * 6 5 4 8 8 C 1.38116 * 120.29915 * 179.97438 * 7 6 5 9 9 C 1.38835 * 119.95719 * 359.49932 * 8 7 6 10 10 N 1.40143 * 120.01752 * 180.31966 * 9 8 7 11 11 C 1.34772 * 119.99792 * 144.90319 * 10 9 8 12 12 O 1.21593 * 120.00496 * 4.60649 * 11 10 9 13 13 N 1.34782 * 119.99878 * 184.61596 * 11 10 9 14 14 C 1.46498 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47272 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99654 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46749 * 90.00806 * 19 17 15 21 21 H 1.48507 * 109.46988 * 210.00153 * 19 17 15 22 22 H 1.48494 * 109.47525 * 330.00099 * 19 17 15 23 23 C 1.38621 * 119.96572 * 0.34020 * 9 8 7 24 24 C 1.38988 * 121.34425 * 345.00472 * 6 5 4 25 25 H 1.09000 * 109.47388 * 185.43730 * 1 2 3 26 26 H 1.09000 * 109.47133 * 305.43717 * 1 2 3 27 27 H 1.08996 * 109.47163 * 65.43282 * 1 2 3 28 28 H 1.08996 * 109.62022 * 45.21014 * 3 2 1 29 29 H 1.09001 * 109.61428 * 165.74509 * 3 2 1 30 30 H 1.08997 * 109.77631 * 56.32443 * 4 3 2 31 31 H 1.09008 * 109.77541 * 177.12792 * 4 3 2 32 32 H 1.07999 * 119.85073 * 359.71155 * 7 6 5 33 33 H 1.08004 * 120.01760 * 179.77681 * 8 7 6 34 34 H 0.96999 * 119.99606 * 324.89515 * 10 9 8 35 35 H 0.97008 * 119.99580 * 359.97438 * 13 11 10 36 36 H 1.08999 * 109.47013 * 299.99518 * 14 13 11 37 37 H 1.08997 * 109.46998 * 59.99229 * 14 13 11 38 38 H 0.96994 * 120.00262 * 179.97438 * 18 17 15 39 39 H 1.07994 * 119.90060 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9658 -1.4014 5 8 2.5924 1.1930 -2.3160 6 6 2.5136 -0.1618 -2.1961 7 6 2.9971 -0.9511 -3.2302 8 6 2.9346 -2.3281 -3.1435 9 6 2.3955 -2.9279 -2.0134 10 7 2.3376 -4.3251 -1.9213 11 6 2.5112 -4.9296 -0.7294 12 8 2.6346 -4.2615 0.2790 13 7 2.5484 -6.2749 -0.6551 14 6 2.7378 -6.9320 0.6405 15 6 2.7413 -8.4269 0.4498 16 1 2.6155 -8.8455 -0.5378 17 6 2.9061 -9.2600 1.5359 18 7 3.0598 -8.7502 2.7384 19 14 2.9098 -11.1130 1.2995 20 1 4.2977 -11.5770 1.0472 21 1 2.3832 -11.7692 2.5233 22 1 2.0513 -11.4659 0.1403 23 6 1.9142 -2.1440 -0.9764 24 6 1.9701 -0.7570 -1.0638 25 1 -0.3634 -1.0230 0.0974 26 1 -0.3633 0.5958 0.8373 27 1 -0.3633 0.4272 -0.9346 28 1 1.4508 1.9709 0.7286 29 1 3.0551 1.3549 0.2528 30 1 0.7568 1.9179 -1.6853 31 1 2.1462 3.0020 -1.4097 32 1 3.4204 -0.4864 -4.1084 33 1 3.3090 -2.9380 -3.9525 34 1 2.1724 -4.8570 -2.7155 35 1 2.4498 -6.8079 -1.4595 36 1 3.6884 -6.6182 1.0716 37 1 1.9251 -6.6535 1.3113 38 1 3.1754 -9.3363 3.5025 39 1 1.4947 -2.6117 -0.0980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332698412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -49.030780 kcal Electronic energy + Delta-G solvation = -22747.113106 eV Core-core repulsion = 19268.290668 eV Total energy + Delta-G solvation = -3478.822438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.21739 -41.19608 -38.62744 -37.50036 -36.18935 -35.37391 -34.30464 -31.65915 -30.83017 -29.66031 -28.74920 -26.45075 -25.21954 -24.66291 -23.58320 -21.95056 -21.18653 -19.91178 -19.01060 -18.60868 -18.08940 -17.57594 -16.98798 -16.55732 -16.45526 -16.01110 -15.73389 -15.64371 -15.43143 -15.03751 -14.72307 -14.68521 -14.13430 -14.04228 -13.99239 -13.35578 -13.20157 -13.09972 -12.89620 -12.71971 -12.56076 -12.42131 -12.21447 -12.00136 -11.47576 -11.24207 -10.81394 -10.79780 -10.34902 -9.88186 -9.14305 -8.64843 -8.28033 -6.44655 0.25387 0.35707 1.44102 1.47080 1.57692 1.73173 2.10364 2.30477 2.39530 2.59564 2.82339 3.07197 3.43475 3.56059 3.87682 3.97784 4.00606 4.24502 4.26139 4.34585 4.39601 4.44197 4.62319 4.75133 4.82239 4.85184 4.93858 5.07136 5.22237 5.25924 5.33742 5.36770 5.46723 5.66464 5.74388 5.83406 5.92703 6.01112 6.21436 6.44542 6.66637 7.19858 7.26412 7.62752 8.84298 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.003042 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.257136 B = 9201.058963 C = 9779.249685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.516 5.516 3 C 0.014 3.986 4 C 0.020 3.980 5 O -0.320 6.320 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.114 4.114 9 C 0.137 3.863 10 N -0.670 5.670 11 C 0.689 3.311 12 O -0.627 6.627 13 N -0.715 5.715 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 C -0.113 4.113 24 C 0.036 3.964 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.424 0.576 35 H 0.408 0.592 36 H -0.014 1.014 37 H -0.012 1.012 38 H 0.269 0.731 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 19.330 -14.739 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.233 5.233 3 C -0.113 4.113 4 C -0.056 4.056 5 O -0.235 6.235 6 C 0.008 3.992 7 C -0.130 4.130 8 C -0.135 4.135 9 C 0.042 3.958 10 N -0.320 5.320 11 C 0.389 3.611 12 O -0.508 6.508 13 N -0.369 5.369 14 C 0.162 3.838 15 C -0.592 4.592 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.178 1.178 23 C -0.135 4.135 24 C -0.061 4.061 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.263 0.737 35 H 0.243 0.757 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.078 0.922 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.240 19.702 -13.265 24.127 hybrid contribution -0.381 -1.099 -0.298 1.201 sum -4.622 18.603 -13.563 23.482 Atomic orbital electron populations 1.22565 0.83862 1.03005 1.02202 1.59024 1.09836 1.14039 1.40433 1.23087 1.02555 0.87331 0.98295 1.23791 0.96067 0.96788 0.88948 1.86272 1.65907 1.13923 1.57367 1.19139 1.02929 0.83726 0.93401 1.20516 1.02296 0.91981 0.98198 1.20950 0.99999 0.94332 0.98246 1.17501 1.00032 0.81791 0.96521 1.42340 1.75175 1.04977 1.09514 1.16306 0.78139 0.82824 0.83792 1.90880 1.59050 1.64624 1.36202 1.45299 1.75713 1.03473 1.12365 1.18448 0.93809 0.91803 0.79705 1.21595 1.51841 0.90308 0.95499 0.89629 1.26068 0.93892 1.05323 0.94326 1.70143 1.48958 1.37861 0.99986 0.85135 0.78819 0.77015 0.78095 1.19634 1.21035 1.17822 1.20865 1.01438 0.91815 0.99404 1.18611 1.04895 0.92603 0.89996 0.92390 0.88280 0.93837 0.85542 0.90153 0.90888 0.83852 0.82072 0.81511 0.73701 0.75664 0.99558 0.99442 0.92241 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.19 127.69 1.17 1.78 16 2 N -0.52 -13.65 4.86 -719.24 -3.49 -17.14 16 3 C 0.01 0.27 6.02 86.47 0.52 0.79 16 4 C 0.02 0.31 7.06 72.12 0.51 0.82 16 5 O -0.32 -7.27 10.40 -96.33 -1.00 -8.27 16 6 C 0.06 1.47 6.47 22.58 0.15 1.62 16 7 C -0.11 -2.46 9.93 22.37 0.22 -2.24 16 8 C -0.11 -2.59 9.96 22.38 0.22 -2.37 16 9 C 0.14 4.20 6.30 38.05 0.24 4.44 16 10 N -0.67 -20.54 5.35 -317.23 -1.70 -22.23 16 11 C 0.69 29.35 8.41 179.05 1.51 30.85 16 12 O -0.63 -33.05 13.78 -4.01 -0.06 -33.11 16 13 N -0.71 -30.76 5.55 -482.30 -2.68 -33.44 16 14 C 0.29 15.87 5.43 85.63 0.46 16.34 16 15 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 16 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 19 Si 0.99 42.27 29.54 68.60 2.03 44.29 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.11 -3.98 8.12 22.57 0.18 -3.80 16 24 C 0.04 1.09 5.12 38.25 0.20 1.29 16 25 H 0.06 1.43 7.86 -2.39 -0.02 1.42 16 26 H 0.10 1.55 7.98 -2.39 -0.02 1.53 16 27 H 0.04 0.78 6.89 -2.39 -0.02 0.77 16 28 H 0.13 1.53 7.90 -2.39 -0.02 1.51 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.01 6.80 -2.39 -0.02 0.99 16 31 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.42 9.10 8.84 -92.71 -0.82 8.28 16 35 H 0.41 14.10 8.34 -92.70 -0.77 13.32 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.11 4.85 6.21 -2.91 -0.02 4.83 16 Total: -1.00 -78.58 326.25 -1.03 -79.61 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.50 Total: 26.24 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.08 Total: 20.26 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -7.58 Total: -129.02 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.06 Total: -41.38 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -78.58 -1.03 -79.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332698412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.575 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds