Wall clock time and date at job start Tue Mar 31 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99473 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46641 * 184.39030 * 5 3 2 7 7 C 1.36929 * 120.00280 * 275.33360 * 6 5 3 8 8 H 1.08000 * 120.00257 * 326.30926 * 7 6 5 9 9 C 1.38812 * 120.00045 * 146.31412 * 7 6 5 10 10 N 1.31626 * 120.00196 * 159.10788 * 9 7 6 11 11 Si 1.86798 * 119.99905 * 339.10873 * 9 7 6 12 12 H 1.48503 * 109.47122 * 92.66911 * 11 9 7 13 13 H 1.48506 * 109.47247 * 212.66736 * 11 9 7 14 14 H 1.48497 * 109.47245 * 332.66985 * 11 9 7 15 15 C 1.46499 * 119.99601 * 95.33523 * 6 5 3 16 16 C 1.53002 * 109.47040 * 89.99714 * 15 6 5 17 17 H 1.08997 * 109.47222 * 55.00211 * 16 15 6 18 18 C 1.53005 * 109.47332 * 174.99629 * 16 15 6 19 19 C 1.52993 * 109.47352 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.47190 * 299.99879 * 19 18 16 21 21 C 1.53008 * 109.46707 * 60.00165 * 20 19 18 22 22 F 1.39898 * 109.47138 * 60.00039 * 21 20 19 23 23 F 1.39897 * 109.46880 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47278 * 294.99975 * 16 15 6 25 25 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47313 * 299.99783 * 1 2 3 27 27 H 1.09005 * 109.47045 * 59.99975 * 1 2 3 28 28 H 1.08999 * 109.47025 * 64.39750 * 5 3 2 29 29 H 1.08991 * 109.47513 * 304.39176 * 5 3 2 30 30 H 0.96998 * 119.99632 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47438 * 330.00031 * 15 6 5 32 32 H 1.08997 * 109.47259 * 209.99696 * 15 6 5 33 33 H 1.09007 * 109.46468 * 60.00115 * 18 16 15 34 34 H 1.08999 * 109.47449 * 300.00654 * 18 16 15 35 35 H 1.09004 * 109.47092 * 180.02562 * 19 18 16 36 36 H 1.08998 * 109.47217 * 59.99951 * 19 18 16 37 37 H 1.08994 * 109.47204 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47466 * 300.00542 * 20 19 18 39 39 H 1.08998 * 109.47195 * 299.99471 * 24 16 15 40 40 H 1.09004 * 109.47023 * 60.00027 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6757 0.1062 7 6 4.0661 3.4516 -1.0189 8 1 4.3673 3.0107 -1.9577 9 6 3.7645 4.8049 -0.9529 10 7 4.2194 5.6264 -1.8753 11 14 2.7130 5.4604 0.4450 12 1 3.5905 5.9136 1.5540 13 1 1.8996 6.6037 -0.0414 14 1 1.8131 4.3850 0.9338 15 6 4.3073 3.2464 1.4156 16 6 5.7973 3.0494 1.7018 17 1 6.3830 3.4724 0.8856 18 6 6.1629 3.7535 3.0100 19 6 7.6530 3.5571 3.2958 20 6 7.9560 2.0624 3.4192 21 6 7.5905 1.3584 2.1108 22 9 8.3418 1.9016 1.0632 23 9 7.8670 -0.0084 2.2238 24 6 6.0997 1.5547 1.8252 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9527 0.8501 -0.9259 29 1 3.9592 0.7144 0.8488 30 1 4.0083 6.5720 -1.8293 31 1 3.7202 2.7464 2.1860 32 1 4.0749 4.3113 1.4157 33 1 5.5772 3.3305 3.8262 34 1 5.9474 4.8184 2.9221 35 1 7.9134 4.0584 4.2281 36 1 8.2384 3.9803 2.4796 37 1 9.0177 1.9225 3.6223 38 1 7.3706 1.6391 4.2354 39 1 5.5141 1.1317 2.6414 40 1 5.8393 1.0531 0.8931 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338303435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:55 Heat of formation + Delta-G solvation = -170.413372 kcal Electronic energy + Delta-G solvation = -25203.050747 eV Core-core repulsion = 21268.275579 eV Total energy + Delta-G solvation = -3934.775169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.70386 -46.69015 -39.64743 -38.18945 -36.08050 -35.06706 -31.94773 -31.10303 -29.91105 -28.51205 -26.63053 -25.56944 -22.89876 -22.24053 -21.35345 -19.94636 -19.68170 -17.27448 -16.91191 -16.68767 -16.53981 -16.16210 -15.81549 -15.69028 -15.25756 -14.76513 -14.30586 -13.82766 -13.56795 -13.23057 -13.16220 -13.01389 -12.98577 -12.64772 -12.44046 -12.25498 -12.08572 -11.97555 -11.80301 -11.61595 -11.09396 -11.05802 -10.87767 -10.62200 -10.51012 -10.26064 -10.22368 -10.00568 -9.84334 -9.68930 -9.24074 -8.55649 -7.12918 -6.02978 -3.47580 3.06438 3.27764 3.34710 3.53234 3.72292 3.96335 4.31693 4.52024 4.52593 4.55018 4.75352 5.09332 5.22736 5.29789 5.34436 5.40691 5.41356 5.45288 5.47945 5.61008 5.61730 5.74923 5.80624 5.88003 5.93539 6.00262 6.03158 6.09977 6.19984 6.23658 6.34553 6.41684 6.60774 6.90564 7.06285 7.87179 8.21718 8.60506 8.84269 9.62026 9.89698 11.10849 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006934 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.132847 B = 4036.830816 C = 5229.370155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.412 3.588 4 O -0.485 6.485 5 C 0.151 3.849 6 N -0.572 5.572 7 C -0.272 4.272 8 H 0.086 0.914 9 C 0.044 3.956 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.289 1.289 13 H -0.307 1.307 14 H -0.243 1.243 15 C 0.142 3.858 16 C -0.103 4.103 17 H 0.094 0.906 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.287 3.713 22 F -0.196 7.196 23 F -0.210 7.210 24 C -0.149 4.149 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -9.322 11.316 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.297 6.297 3 C 0.251 3.749 4 O -0.369 6.369 5 C 0.021 3.979 6 N -0.291 5.291 7 C -0.400 4.400 8 H 0.104 0.896 9 C -0.157 4.157 10 N -0.536 5.536 11 Si 0.705 3.295 12 H -0.218 1.218 13 H -0.235 1.235 14 H -0.167 1.167 15 C 0.017 3.983 16 C -0.124 4.124 17 H 0.112 0.888 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.193 4.193 21 C 0.251 3.749 22 F -0.177 7.177 23 F -0.191 7.191 24 C -0.187 4.187 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.803 -8.843 11.192 14.537 hybrid contribution -0.918 0.503 0.539 1.177 sum 1.885 -8.340 11.732 14.517 Atomic orbital electron populations 1.23033 0.78940 1.02215 1.01802 1.86629 1.21791 1.36166 1.85132 1.26919 0.94721 0.80851 0.72433 1.90667 1.66739 1.36110 1.43379 1.21137 0.84525 0.89314 1.02971 1.44197 1.72884 1.07740 1.04265 1.18750 1.41501 0.90386 0.89374 0.89644 1.25352 0.96891 0.96529 0.96973 1.69836 1.44064 1.03637 1.36045 0.87090 0.82004 0.78632 0.81746 1.21827 1.23508 1.16659 1.21261 0.91791 0.98869 0.86423 1.21692 1.00480 0.92372 0.97815 0.88758 1.21655 0.95042 1.01533 0.97675 1.21496 0.97620 0.93681 1.02622 1.22493 1.03352 0.97771 0.95656 1.21204 0.92385 0.74798 0.86557 1.93005 1.78674 1.85605 1.60459 1.92971 1.95150 1.34462 1.96509 1.22640 0.91159 1.00305 1.04550 0.89326 0.92910 0.92617 0.88806 0.89712 0.92598 0.93916 0.91892 0.91982 0.91116 0.91037 0.90763 0.90154 0.89204 0.89846 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.38 -6.47 10.57 -39.26 -0.41 -6.88 16 3 C 0.41 8.25 8.00 36.01 0.29 8.54 16 4 O -0.49 -11.65 14.54 -18.75 -0.27 -11.93 16 5 C 0.15 2.79 5.17 -5.19 -0.03 2.76 16 6 N -0.57 -12.65 1.55 -174.62 -0.27 -12.92 16 7 C -0.27 -7.31 9.77 -15.06 -0.15 -7.46 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.04 1.26 5.35 -17.43 -0.09 1.17 16 10 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 11 Si 0.87 22.49 24.68 -169.99 -4.20 18.29 16 12 H -0.29 -6.97 6.58 56.52 0.37 -6.60 16 13 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16 14 H -0.24 -6.38 5.81 56.52 0.33 -6.05 16 15 C 0.14 2.82 3.97 -4.04 -0.02 2.81 16 16 C -0.10 -1.73 2.27 -90.62 -0.21 -1.93 16 17 H 0.09 1.88 7.80 -51.93 -0.41 1.47 16 18 C -0.12 -1.67 5.20 -26.73 -0.14 -1.80 16 19 C -0.12 -1.37 5.80 -26.73 -0.16 -1.52 16 20 C -0.15 -1.74 5.45 -26.72 -0.15 -1.89 16 21 C 0.29 4.05 2.10 -26.70 -0.06 4.00 16 22 F -0.20 -3.28 16.02 2.25 0.04 -3.25 16 23 F -0.21 -3.07 17.06 2.25 0.04 -3.03 16 24 C -0.15 -2.16 3.72 -26.71 -0.10 -2.26 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 29 H 0.08 1.28 6.23 -51.93 -0.32 0.96 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.06 1.43 2.55 -51.93 -0.13 1.29 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 1.48 5.99 -51.93 -0.31 1.17 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -32.36 321.41 -5.07 -37.43 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.88 Total: -0.23 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 0.27 Total: 3.96 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.50 Total: -39.21 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.69 Total: -18.81 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.07 Total: -6.27 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.20 Total: 18.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.36 -5.07 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338303435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.981 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds